Package org.biojava.bio.program.sax


package org.biojava.bio.program.sax
Parsers which offer XML representations of the output from common bioinformatics tools.
  • Classes
    Class
    Description
    A facade class allowing for direct SAX2-like parsing of the native output from Blast-like bioinformatics software.
    A SAX2 parser for dealing with a multiple sequence alignment as produced by ClustalW outputing .aln format.
    FastaSearchSAXParser is a SAX2 compliant parser for '-m 10' format output from the the Fasta search program (see the Fasta documentation for details of this format).
    A SAX2 parser for dealing with multiple sequences in FASTA format.
    A SAX2 parser for dealing with native PDB files.
    A SAX2 parser for dealing with a sequence alignments.