Class HmmerProfileHMM

All Implemented Interfaces:
Serializable, MarkovModel, Changeable

public class HmmerProfileHMM extends ProfileHMM
This is a class for representing HMMER generated Profile HMM. It differs from the normal ProfileHMM only in the states which are connected: - there are no insert invalid input: '<'-> delete transitions allowed - there is no iO initial insert state (between begin and initial match states) - there is not iN final insert state (between final match state and end state)
Author:
Lachlan Coin
See Also: