Uses of Package
org.biojava.bio.dist
Packages that use org.biojava.bio.dist
Package
Description
Probability distributions over Alphabets.
HMM and Dynamic Programming Algorithms.
Graphical interfaces for biojava objects.
The classes and interfaces in this package cover common molecular
biological techniques such as restriction digests and PCR.
FASTQ and variants sequence format I/O.
Tools for working with profile Hidden Markov Models from the HMMer package.
Parser for Phred output
Classes and interfaces for defining biological sequences and informatics
objects.
Representation of the Symbols that make up a sequence, and locations within
them.
GA functions
Utility functions and helper classes
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Classes in org.biojava.bio.dist used by org.biojava.bio.distClassDescriptionAn abstract implementation of Distribution.An encapsulation of a count over the Symbols within an alphabet.An encapsulation of a probability distribution over the Symbols within an alphabet.A thing that can make Distributions.An object that can be used to train a distribution up.A context within a group of DistributionTrainers can be trained together.A distribution trainer that just ignores all counts.Provides an N'th order distribution.A simple implementation of a distribution, which works with any finite alphabet.
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Classes in org.biojava.bio.dist used by org.biojava.bio.dpClassDescriptionAn encapsulation of a probability distribution over the Symbols within an alphabet.A thing that can make Distributions.A context within a group of DistributionTrainers can be trained together.A no-frills implementation of DistributionTrainerContext.
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Classes in org.biojava.bio.dist used by org.biojava.bio.guiClassDescriptionAn encapsulation of a probability distribution over the Symbols within an alphabet.
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Classes in org.biojava.bio.dist used by org.biojava.bio.molbioClassDescriptionAn encapsulation of a probability distribution over the Symbols within an alphabet.
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Classes in org.biojava.bio.dist used by org.biojava.bio.program.fastqClassDescriptionAn encapsulation of a probability distribution over the Symbols within an alphabet.
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Classes in org.biojava.bio.dist used by org.biojava.bio.program.hmmerClassDescriptionAn encapsulation of a probability distribution over the Symbols within an alphabet.A thing that can make Distributions.
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Classes in org.biojava.bio.dist used by org.biojava.bio.program.phredClassDescriptionAn encapsulation of a probability distribution over the Symbols within an alphabet.
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Classes in org.biojava.bio.dist used by org.biojava.bio.seqClassDescriptionAn encapsulation of a probability distribution over the Symbols within an alphabet.
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Classes in org.biojava.bio.dist used by org.biojava.bio.symbolClassDescriptionAn encapsulation of a probability distribution over the Symbols within an alphabet.
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Classes in org.biojava.bio.dist used by org.biojavax.ga.functions
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Classes in org.biojava.bio.dist used by org.biojavax.ga.util