Uses of Interface
org.biojava.bio.symbol.Alphabet

Packages that use Alphabet
Package
Description
Classes to generate and describe sequence alignments.
Interfaces and classes for chromatogram data, as produced by DNA sequencing equipment.
Probability distributions over Alphabets.
HMM and Dynamic Programming Algorithms.
 
Graphical interfaces for biojava objects.
Tools for working with profile Hidden Markov Models from the HMMer package.
Classes and interfaces to load Amino Acid Index database files.
Classes and interfaces for defining biological sequences and informatics objects.
Collections of biological sequence data.
General purpose Sequence storage in a relational database.
The classes and interfaces for defining sequence similarity and honology.
Standard in-memory implementations of Sequence and Feature.
Classes and interfaces for processing and producing flat-file representations of sequences.
Representation of the Symbols that make up a sequence, and locations within them.
The Biojava extensions packages, classes that extend the core biojava functionality
Interface between biojava and biosql databases
Rich implementations of Sequences, Locations and Features.
Classes to support the I/O of RichSequence and Bioentry objects.