Class GappedRenderer
- All Implemented Interfaces:
Serializable
,SequenceRenderer
,Changeable
Each ungapped block in the gapped symbol list will be displayed as a contiguous region by this renderer. Where there are gaps, this renderer will display nothing. Then, when the gaps are over, it will continue to render the ungapped sequence. This has the effect of snapping the image of the ungapped sequence where there are gaps, so as to allow it to be viewed in the gapped co-ordinate system.
- Author:
- Matthew Pocock
- See Also:
-
Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.bio.gui.sequence.SequenceRenderer
SequenceRenderer.RendererForwarder
-
Field Summary
Fields inherited from class org.biojava.bio.gui.sequence.SequenceRendererWrapper
RENDERER
-
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptiondouble
Retrieve the depth of this renderer when rendering src.double
Retrieve the minimum leading distance for this renderer when rendering src.double
Retrieve the minimum trailing distance for this renderer when rendering src.protected SequenceRenderContext
makeContext
(SequenceRenderContext src, RangeLocation loc) void
paint
(Graphics2D g, SequenceRenderContext src) Render a portion (possibly all) of the information for src to g, displaying all of the data that would fall within seqBox.Methods inherited from class org.biojava.bio.gui.sequence.SequenceRendererWrapper
getChangeSupport, getRenderer, processMouseEvent, setRenderer
Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener
-
Constructor Details
-
GappedRenderer
public GappedRenderer() -
GappedRenderer
-
-
Method Details
-
getDepth
Description copied from interface:SequenceRenderer
Retrieve the depth of this renderer when rendering src.The depth may vary between sequence panels - for example based upon sequence length. Each line of information in the SequenceRendererContext only renders a region of the sequence. The depth for one complete line may be different from that for another due to the sequence having more or less information in that region to show. For example, a feature renderer implementation may chose to collapse down to a depth of zero pixels if there are no features to render within a region.
- Specified by:
getDepth
in interfaceSequenceRenderer
- Overrides:
getDepth
in classSequenceRendererWrapper
- Parameters:
src
- the SequenceRenderContext to return info for- Returns:
- the depth of the renderer for that sequence panel
-
getMinimumLeader
Description copied from interface:SequenceRenderer
Retrieve the minimum leading distance for this renderer when rendering src.The leading distance may vary between sequence panels - for example based upon sequence length.
- Specified by:
getMinimumLeader
in interfaceSequenceRenderer
- Overrides:
getMinimumLeader
in classSequenceRendererWrapper
- Parameters:
src
- the SequenceRenderContext to return info for- Returns:
- the leading distance of the renderer for that sequence panel
-
getMinimumTrailer
Description copied from interface:SequenceRenderer
Retrieve the minimum trailing distance for this renderer when rendering src.The trailing distance may vary between sequence panels - for example based upon sequence length.
- Specified by:
getMinimumTrailer
in interfaceSequenceRenderer
- Overrides:
getMinimumTrailer
in classSequenceRendererWrapper
- Parameters:
src
- the SequenceRenderContext to return info for- Returns:
- the trailing distance of the renderer for that sequence panel
-
paint
Description copied from interface:SequenceRenderer
Render a portion (possibly all) of the information for src to g, displaying all of the data that would fall within seqBox.- Specified by:
paint
in interfaceSequenceRenderer
- Overrides:
paint
in classSequenceRendererWrapper
- Parameters:
g
- the Graphics2D to render tosrc
- the SequenceRenderContext that encapsulates the information to render
-
makeContext
-