Uses of Package
org.biojavax.bio.phylo.io.nexus
Packages that use org.biojavax.bio.phylo.io.nexus
Package
Description
Classes to support phlylogeny objects.
Classes to support the I/O of Nexus files.
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Classes in org.biojavax.bio.phylo.io.nexus used by org.biojavax.bio.phyloClassDescriptionRepresents Nexus characters blocks.Represents Nexus taxa blocks.
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Classes in org.biojavax.bio.phylo.io.nexus used by org.biojavax.bio.phylo.io.nexusClassDescriptionRepresents Nexus characters blocks.Builds Nexus characters blocks.Listens to events that represent Nexus characters blocks.Parses Nexus characters blocks.Listens to events that represent Nexus data blocks.Listens to events that represent Nexus distances blocks.Represents a Nexus block.Builds a Nexus block from listening to events.This abstract version knows how to build and add comments.Listens to events from NexusBlockParser objects to create objects.Parses Nexus blocks.All block parsers should derive from this abstract parser.Represents a Nexus comment, possibly nested.Represents Nexus files.Listens to events fired by the Nexus parser.Example abstract implementation which all others should extend.Represents general info about nexus objects.Listens to events that represent Nexus taxa blocks.A simple representation of a Newick tree as a single string.Listens to events that represent Nexus trees blocks.