Package org.biojava.bio.gui
Class FeatureTree
java.lang.Object
java.awt.Component
java.awt.Container
javax.swing.JComponent
javax.swing.JTree
org.biojava.bio.gui.FeatureTree
- All Implemented Interfaces:
ImageObserver
,MenuContainer
,Serializable
,Accessible
,Scrollable
FeatureTree is GUI tree to display the features and annotations
of the sequences in a
SequenceDB
Nested Features are
displayed as expandable leaves.
Copyright: Copyright (c) 2002
Company: AgResearch
- Version:
- 1.0
- Author:
- Mark Schreiber
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from class javax.swing.JTree
JTree.AccessibleJTree, JTree.DropLocation, JTree.DynamicUtilTreeNode, JTree.EmptySelectionModel, JTree.TreeModelHandler, JTree.TreeSelectionRedirector
Nested classes/interfaces inherited from class javax.swing.JComponent
JComponent.AccessibleJComponent
Nested classes/interfaces inherited from class java.awt.Container
Container.AccessibleAWTContainer
Nested classes/interfaces inherited from class java.awt.Component
Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy
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Field Summary
Fields inherited from class javax.swing.JTree
ANCHOR_SELECTION_PATH_PROPERTY, CELL_EDITOR_PROPERTY, CELL_RENDERER_PROPERTY, cellEditor, cellRenderer, editable, EDITABLE_PROPERTY, EXPANDS_SELECTED_PATHS_PROPERTY, INVOKES_STOP_CELL_EDITING_PROPERTY, invokesStopCellEditing, LARGE_MODEL_PROPERTY, largeModel, LEAD_SELECTION_PATH_PROPERTY, ROOT_VISIBLE_PROPERTY, rootVisible, ROW_HEIGHT_PROPERTY, rowHeight, SCROLLS_ON_EXPAND_PROPERTY, scrollsOnExpand, SELECTION_MODEL_PROPERTY, selectionModel, selectionRedirector, SHOWS_ROOT_HANDLES_PROPERTY, showsRootHandles, TOGGLE_CLICK_COUNT_PROPERTY, toggleClickCount, TREE_MODEL_PROPERTY, treeModel, treeModelListener, VISIBLE_ROW_COUNT_PROPERTY, visibleRowCount
Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW
Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionconvertValueToText
(Object value, boolean selected, boolean expanded, boolean leaf, int row, boolean hasFocus) LabelsSequence
objects with their name,Annotations
with the tag Annotations,Features
with the tag Features and other objects with thetoString
value.void
Use this method to provide the sequences for the tree to work with.Methods inherited from class javax.swing.JTree
addSelectionInterval, addSelectionPath, addSelectionPaths, addSelectionRow, addSelectionRows, addTreeExpansionListener, addTreeSelectionListener, addTreeWillExpandListener, cancelEditing, clearSelection, clearToggledPaths, collapsePath, collapseRow, createTreeModel, createTreeModelListener, expandPath, expandRow, fireTreeCollapsed, fireTreeExpanded, fireTreeWillCollapse, fireTreeWillExpand, fireValueChanged, getAccessibleContext, getAnchorSelectionPath, getCellEditor, getCellRenderer, getClosestPathForLocation, getClosestRowForLocation, getDefaultTreeModel, getDescendantToggledPaths, getDragEnabled, getDropLocation, getDropMode, getEditingPath, getExpandedDescendants, getExpandsSelectedPaths, getInvokesStopCellEditing, getLastSelectedPathComponent, getLeadSelectionPath, getLeadSelectionRow, getMaxSelectionRow, getMinSelectionRow, getModel, getNextMatch, getPathBetweenRows, getPathBounds, getPathForLocation, getPathForRow, getPreferredScrollableViewportSize, getRowBounds, getRowCount, getRowForLocation, getRowForPath, getRowHeight, getScrollableBlockIncrement, getScrollableTracksViewportHeight, getScrollableTracksViewportWidth, getScrollableUnitIncrement, getScrollsOnExpand, getSelectionCount, getSelectionModel, getSelectionPath, getSelectionPaths, getSelectionRows, getShowsRootHandles, getToggleClickCount, getToolTipText, getTreeExpansionListeners, getTreeSelectionListeners, getTreeWillExpandListeners, getUI, getUIClassID, getVisibleRowCount, hasBeenExpanded, isCollapsed, isCollapsed, isEditable, isEditing, isExpanded, isExpanded, isFixedRowHeight, isLargeModel, isPathEditable, isPathSelected, isRootVisible, isRowSelected, isSelectionEmpty, isVisible, makeVisible, paramString, removeDescendantSelectedPaths, removeDescendantToggledPaths, removeSelectionInterval, removeSelectionPath, removeSelectionPaths, removeSelectionRow, removeSelectionRows, removeTreeExpansionListener, removeTreeSelectionListener, removeTreeWillExpandListener, scrollPathToVisible, scrollRowToVisible, setAnchorSelectionPath, setCellEditor, setCellRenderer, setDragEnabled, setDropMode, setEditable, setExpandedState, setExpandsSelectedPaths, setInvokesStopCellEditing, setLargeModel, setLeadSelectionPath, setModel, setRootVisible, setRowHeight, setScrollsOnExpand, setSelectionInterval, setSelectionModel, setSelectionPath, setSelectionPaths, setSelectionRow, setSelectionRows, setShowsRootHandles, setToggleClickCount, setUI, setVisibleRowCount, startEditingAtPath, stopEditing, treeDidChange, updateUI
Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update
Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree
Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
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Constructor Details
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FeatureTree
public FeatureTree()Create a new FeatureTree
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Method Details
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setSequenceDB
Use this method to provide the sequences for the tree to work with.- Parameters:
db
- A database ofSequence
s to display- Throws:
BioException
- if information cannot be retrieved fromdb
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convertValueToText
public String convertValueToText(Object value, boolean selected, boolean expanded, boolean leaf, int row, boolean hasFocus) LabelsSequence
objects with their name,Annotations
with the tag Annotations,Features
with the tag Features and other objects with thetoString
value.- Overrides:
convertValueToText
in classJTree
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