Uses of Class
org.biojava.bio.seq.io.agave.StAXFeatureHandler
Packages that use StAXFeatureHandler
Package
Description
Classes for converting between AGAVE XML and BioJava objects.
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Uses of StAXFeatureHandler in org.biojava.bio.seq.io.agave
Subclasses of StAXFeatureHandler in org.biojava.bio.seq.io.agaveModifier and TypeClassDescriptionclass
class
Handles the AGAVE <bio_sequence> elementclass
Handles the AGAVE <bio_sequence> elementclass
Handles the AGAVE <cds> elementclass
Handles the AGAVE <chromosome> elementclass
class
class
class
Handles the AGAVE <contig> elementclass
class
class
class
class
Handles the root AGAVE element modified for agave formatclass
Handles the AGAVE <mrna> elementclass
Handles the AGAVE <predicted_protein> elementclass
class
class
seq_featureclass
sequence_mapclass
transcriptclass
unordered_fragmentsFields in org.biojava.bio.seq.io.agave declared as StAXFeatureHandlerModifier and TypeFieldDescriptionprotected StAXFeatureHandler
StAXFeatureHandler.staxenv
protected StAXFeatureHandler
StAXPropertyHandler.staxenv
Methods in org.biojava.bio.seq.io.agave with parameters of type StAXFeatureHandlerModifier and TypeMethodDescriptionStAXHandlerFactory.getHandler
(StAXFeatureHandler staxenv) Return a suitable StAX content handler.