Package org.biojava.bio.alignment
Interface ARAlignment
- All Superinterfaces:
Alignment
,Changeable
,SymbolList
- All Known Implementing Classes:
FlexibleAlignment
ARAlignment is an interface that defines methods for adding and removing seqeunces from an Alignment.
- Author:
- David Waring
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Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.bio.alignment.Alignment
Alignment.SymbolListIterator
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Field Summary
FieldsFields inherited from interface org.biojava.bio.symbol.SymbolList
EDIT, EMPTY_LIST
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Method Summary
Methods inherited from interface org.biojava.bio.alignment.Alignment
getLabels, subAlignment, symbolAt, symbolListForLabel, symbolListIterator
Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener
Methods inherited from interface org.biojava.bio.symbol.SymbolList
edit, getAlphabet, iterator, length, seqString, subList, subStr, symbolAt, toList
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Field Details
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ADD_LABEL
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REMOVE_LABEL
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Method Details
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addSequence
- Throws:
ChangeVetoException
BioException
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removeSequence
- Throws:
ChangeVetoException
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