Uses of Interface
org.biojava.bio.seq.OptimizableFilter
Packages that use OptimizableFilter
Package
Description
Graphical displays of biological sequences and associated annotations.
Classes and interfaces for defining biological sequences and informatics
objects.
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Uses of OptimizableFilter in org.biojava.bio.gui.sequence
Methods in org.biojava.bio.gui.sequence with parameters of type OptimizableFilterModifier and TypeMethodDescriptionvoid
AbstractBeadRenderer.removeDelegateRenderer
(OptimizableFilter filter) removeDelegateRenderer
removes any association of the givenOptimizableFilter
with aBeadFeatureRenderer
.void
AbstractBeadRenderer.setDelegateRenderer
(OptimizableFilter filter, BeadFeatureRenderer renderer) setDelegateRenderer
associates anOptimizableFilter
with aBeadFeatureRenderer
.void
BeadFeatureRenderer.setDelegateRenderer
(OptimizableFilter filter, BeadFeatureRenderer renderer) setDelegateRenderer
associates anOptimizableFilter
with aBeadFeatureRenderer
.void
RectangularImapRenderer.setDelegateRenderer
(OptimizableFilter filter, BeadFeatureRenderer renderer) setDelegateRenderer
for the specified filter. -
Uses of OptimizableFilter in org.biojava.bio.seq
Classes in org.biojava.bio.seq that implement OptimizableFilterModifier and TypeClassDescriptionstatic final class
Retrieve features that contain a given annotation, and that the set of values contains the value given.static class
Filter by applying a nestedFeatureFilter
to all ancestor features.static final class
Retrieve features that contain a given annotation with a given value.static class
A filter that returns all features that have an annotation bundle that is of a given annotation type.static class
Filter by applying a nestedFeatureFilter
to the child features.static final class
Filter which accepts only those filters which are an instance of a specific Java classstatic final class
Accepts features which are ComponentFeatures and have acomponentSequenceName
property of the specified value.static class
Filter by applying a nestedFeatureFilter
to all descendant features.static final class
Accept only features which are equal to the specified featurestatic final class
ByPairwiseScore
is used to filterSimilarityPairFeature
s by their score.static class
Filter by applying a nestedFeatureFilter
to the parent feature.static final class
Accept features that reside on a sequence with a particular name.static final class
Construct one of these to filter features by source.static final class
Construct one of these to filter features by type.static final class
A filter that returns all features contained within a location.static final class
Accept features with a given reading frame.static final class
Retrieve features that contain a given annotation with any value.static class
Accepts features where all immediate children meet the supplied filter.static class
Accepts features where all descendants meet the supplied filter.static final class
A filter that returns all features overlapping a location.static final class
A filter that accepts all features whose shadow is contained by a specifiedLocation
.static final class
A filter that accepts all features whose shadow overlaps a specifiedLocation
.static final class
Accept features with a given strandedness.