Uses of Interface
org.biojavax.bio.alignment.RemotePairwiseAlignmentOutputProperties
Packages that use RemotePairwiseAlignmentOutputProperties
Package
Description
This package contains the interfaces that need to be implemented by discrete alignment services.
This package holds implementations of the org.biojava3.ws.alignment interfaces for the NCBI remote QBlast services
through the WWW.
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Uses of RemotePairwiseAlignmentOutputProperties in org.biojavax.bio.alignment
Methods in org.biojavax.bio.alignment with parameters of type RemotePairwiseAlignmentOutputPropertiesModifier and TypeMethodDescriptionRemotePairwiseAlignmentService.getAlignmentResults
(String rid, RemotePairwiseAlignmentOutputProperties out) Getting the actual alignment results from this instantiated service for a given ID with specific formatting parameters held in a RemotePairwiseAlignmentOutputProperties-implemented object. -
Uses of RemotePairwiseAlignmentOutputProperties in org.biojavax.bio.alignment.blast
Classes in org.biojavax.bio.alignment.blast that implement RemotePairwiseAlignmentOutputPropertiesModifier and TypeClassDescriptionclass
The actual implementation of the RemotePairwiseAlignmentOutputProperties interface for the QBlast service.Methods in org.biojavax.bio.alignment.blast with parameters of type RemotePairwiseAlignmentOutputPropertiesModifier and TypeMethodDescriptionRemoteQBlastService.getAlignmentResults
(String id, RemotePairwiseAlignmentOutputProperties rb) This method extracts the actual Blast report for this request ID.