Package org.biojava.bio.dp.twohead
package org.biojava.bio.dp.twohead
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ClassDescriptionA single cell in the DP matrix.The interface for all functions that can calculate the 'scores' array for a given cell.The interface for all functions that can calculate the 'scores' array for a given cell.This is an implementation of CellCalculatorFactoryMaker that compiles the HMM object down to Java byte-code that is equivalent in behaviour to the interpreter.Cache for columns of emission probabilities in pair-wise alignment algorithms.A LIGHT implementation of PairDPCursor.A cursor over a DP matrix.Storage structure for intermediate values from a pairwise dynamic programming run.Algorithms for dynamic programming (alignments) between pairs of SymbolLists.