Class EmblLikeLocationParser

java.lang.Object
org.biojava.bio.seq.io.EmblLikeLocationParser

public class EmblLikeLocationParser extends Object
Deprecated.
Use org.biojavax.bio.seq.io framework instead
EmblLikeLocationParser parses EMBL/Genbank style locations. Supported location forms:
   123
  invalid input: '<'123 or >123
  (123.567)
  (123.567)..789
   123..(567.789)
  (123.345)..(567.789)
   123..456
  invalid input: '<'123..567 or 123..>567 or invalid input: '<'123..>567
   123^567
   AL123465:(123..567)
 
Since:
1.2
Author:
Keith James, Greg Cox
  • Method Details

    • parseLocation

      public Feature.Template parseLocation(String location, Feature.Template theTemplate) throws BioException
      Deprecated.
      parseLocation creates a Location from the String and returns a stranded location.
      Parameters:
      location - a location String.
      theTemplate - the template to be filled with the parsed out location information.
      Throws:
      BioException - if an error occurs.