Uses of Interface
org.biojavax.bio.seq.RichFeature
Packages that use RichFeature
Package
Description
Rich implementations of Sequences, Locations and Features.
Classes to support the I/O of RichSequence and
Bioentry objects.
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Uses of RichFeature in org.biojavax.bio.seq
Classes in org.biojavax.bio.seq that implement RichFeatureMethods in org.biojavax.bio.seq that return RichFeatureModifier and TypeMethodDescriptionstatic RichFeature
Takes a normal Feature and attempts to convert it into a RichFeature.EmptyRichLocation.getFeature()
Retrieves the feature this location is associated with.RichLocation.getFeature()
Retrieves the feature this location is associated with.SimpleRichLocation.getFeature()
Retrieves the feature this location is associated with.RichFeatureRelationship.getObject()
Returns the object of this relationship (ie. the feature which this relationship starts from).SimpleRichFeatureRelationship.getObject()
Returns the object of this relationship (ie. the feature which this relationship starts from).RichFeatureRelationship.getSubject()
Gets the feature that this relationship refers to.SimpleRichFeatureRelationship.getSubject()
Gets the feature that this relationship refers to.static RichFeature
RichFeature.Tools.makeEmptyFeature()
A way to make a dummy featureMethods in org.biojavax.bio.seq with parameters of type RichFeatureModifier and TypeMethodDescriptionvoid
CompoundRichLocation.setFeature
(RichFeature feature) Sets the feature this location is associated with.void
EmptyRichLocation.setFeature
(RichFeature feature) Sets the feature this location is associated with.void
RichLocation.setFeature
(RichFeature feature) Sets the feature this location is associated with.void
SimpleRichLocation.setFeature
(RichFeature feature) Sets the feature this location is associated with.Constructors in org.biojavax.bio.seq with parameters of type RichFeatureModifierConstructorDescriptionSimpleRichFeatureRelationship
(RichFeature object, RichFeature subject, ComparableTerm term, int rank) Creates a new instance of SimpleRichFeatureRelationship. -
Uses of RichFeature in org.biojavax.bio.seq.io
Fields in org.biojavax.bio.seq.io declared as RichFeatureModifier and TypeFieldDescriptionprotected RichFeature
RichSeqIOAdapter.emptyFeature
This is a dummy feature.Methods in org.biojavax.bio.seq.io that return RichFeatureModifier and TypeMethodDescriptionDebuggingRichSeqIOListener.getCurrentFeature()
RichSeqIOAdapter.getCurrentFeature()
RichSeqIOListener.getCurrentFeature()
Gets the feature currently being created.SimpleRichSequenceBuilder.getCurrentFeature()
Gets the feature currently being created.