Uses of Interface
org.biojavax.RankedDocRef
Packages that use RankedDocRef
Package
Description
The Biojava extensions packages, classes that extend the core biojava
functionality
Classes to represent biological entities and their relationships.
Classes to support the I/O of RichSequence and
Bioentry objects.
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Uses of RankedDocRef in org.biojavax
Classes in org.biojavax that implement RankedDocRef -
Uses of RankedDocRef in org.biojavax.bio
Methods in org.biojavax.bio that return types with arguments of type RankedDocRefModifier and TypeMethodDescriptionBioEntry.getRankedDocRefs()
Returns a set of all bioentrydocrefs associated with this bioentry.SimpleBioEntry.getRankedDocRefs()
Returns a set of all bioentrydocrefs associated with this bioentry.Methods in org.biojavax.bio with parameters of type RankedDocRefModifier and TypeMethodDescriptionvoid
BioEntry.addRankedDocRef
(RankedDocRef docref) Adds a ranked docref instance to this bioentry.void
SimpleBioEntry.addRankedDocRef
(RankedDocRef docref) Adds a ranked docref instance to this bioentry.void
BioEntry.removeRankedDocRef
(RankedDocRef docref) Removes a ranked docref instance from this bioentry.void
SimpleBioEntry.removeRankedDocRef
(RankedDocRef docref) Removes a ranked docref instance from this bioentry. -
Uses of RankedDocRef in org.biojavax.bio.seq.io
Methods in org.biojavax.bio.seq.io with parameters of type RankedDocRefModifier and TypeMethodDescriptionvoid
DebuggingRichSeqIOListener.setRankedDocRef
(RankedDocRef ref) void
RichSeqIOAdapter.setRankedDocRef
(RankedDocRef ref) void
RichSeqIOListener.setRankedDocRef
(RankedDocRef ref) Call back method so the event emitter can tell the listener about a literature reference in the record being read.void
SimpleRichSequenceBuilder.setRankedDocRef
(RankedDocRef ref) Call back method so the event emitter can tell the listener about a literature reference in the record being read.