Interface WobbleDistribution


public interface WobbleDistribution
an object to return statistics about the frequency of the wobble base in a set of synonymous codons.
Since:
1.3
Author:
David Huen
  • Method Summary

    Modifier and Type
    Method
    Description
    returns the frequency with which synonymous codons start with a specified pair of bases.
    returns Set containing the nonWobbleBases that occur in codons that encode this residue
    returns the residue encoded by this WobbleDistribution
    getWobbleFrequency(Symbol nonWobbleBases)
    returns the frequency of a specific wobble base in a set of synonymous codons that start with the same two bases.
  • Method Details

    • getResidue

      returns the residue encoded by this WobbleDistribution
    • getNonWobbleBases

      returns Set containing the nonWobbleBases that occur in codons that encode this residue
    • getFrequencyOfNonWobbleBases

      returns the frequency with which synonymous codons start with a specified pair of bases.
    • getWobbleFrequency

      returns the frequency of a specific wobble base in a set of synonymous codons that start with the same two bases. (sums to one over this set).