Uses of Class
org.biojava.bio.symbol.AbstractSymbolList
Packages that use AbstractSymbolList
Package
Description
Classes to generate and describe sequence alignments.
Standard in-memory implementations of
Sequence
and
Feature
.Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of AbstractSymbolList in org.biojava.bio.alignment
Subclasses of AbstractSymbolList in org.biojava.bio.alignmentModifier and TypeClassDescriptionclass
class
class
This class stores the result of an alignment procedure that creates a pairwise alignment of two sequences.class
FlexibleAlignment is a class which implements UnequalLengthAlignment, ARAlignment and EditableAlignment It places no restriction on where any sequence can be in the alignment so there could be gaps in the alignment.class
A simple implementation of an Alignment. -
Uses of AbstractSymbolList in org.biojava.bio.seq.impl
Subclasses of AbstractSymbolList in org.biojava.bio.seq.implModifier and TypeClassDescriptionclass
Support class for applications which need to patch together sections of sequence into a single SymbolList.class
Support class for applications which need to patch together sections of sequence into a single SymbolList.class
Simple implementation of GappedSequence. -
Uses of AbstractSymbolList in org.biojava.bio.symbol
Subclasses of AbstractSymbolList in org.biojava.bio.symbolModifier and TypeClassDescriptionclass
SymbolList implementation using constant-size chunks.class
Symbol list which just consists of non-informative symbols.class
A SymbolList that stores symbols as bit-patterns in an array of longs.class
This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps.class
Basic implementation of SymbolList.