Uses of Interface
org.biojava.bio.symbol.SymbolList

Packages that use SymbolList
Package
Description
Classes to generate and describe sequence alignments.
Interfaces and classes for chromatogram data, as produced by DNA sequencing equipment.
Probability distributions over Alphabets.
HMM and Dynamic Programming Algorithms.
 
 
Graphical displays of biological sequences and associated annotations.
The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR.
ABI Trace Handling.
FASTQ and variants sequence format I/O.
Parser for Phred output
Support for the SCF chromatogram format.
SSAHA sequence searching API.
Utilities to aid in performing various physical analysis of proteins.
Interfaces and classes for representing sequence similarity search results.
Classes and interfaces for defining biological sequences and informatics objects.
The classes and interfaces for defining sequence similarity and honology.
Standard in-memory implementations of Sequence and Feature.
Classes and interfaces for processing and producing flat-file representations of sequences.
Code for projecting Feature objects and systematically altering their properties.
Representation of the Symbols that make up a sequence, and locations within them.
 
This package is used to perform regular expression searches of SymbolLists defined in arbitrary Alphabets.
The Biojava extensions packages, classes that extend the core biojava functionality
Interface between biojava and biosql databases
Rich implementations of Sequences, Locations and Features.
Classes to provide a genetic algorithm framework
GA functions
Default implementations and abstract classes.
Utility functions and helper classes