Package org.biojava.bio.seq.io.agave
Interface AGAVEBioSeqCallbackItf
- All Known Implementing Classes:
AGAVEBioSeqHandler
public interface AGAVEBioSeqCallbackItf
An interface that can be tested for by nested handlers
when trying to do a callback.
This one handles callbacks from nested elements that
determine strandedness of a nesting element.
- Author:
- Hanning Ni Doubletwist Inc
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Method Summary
Modifier and TypeMethodDescriptionvoid
void
reportFeature
(Location loc) Allows nesting class that manages a gene template to gain information about its extent from nested elements.void
reportStrand
(StrandedFeature.Strand strand)
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Method Details
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reportFeature
Allows nesting class that manages a gene template to gain information about its extent from nested elements. Strand is reported separately as some gene features may not have strand. -
reportStrand
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reportDna
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