Uses of Interface
org.biojava.bio.symbol.BasisSymbol
Packages that use BasisSymbol
Package
Description
HMM and Dynamic Programming Algorithms.
Tools for working with profile Hidden Markov Models from the HMMer package.
Representation of the Symbols that make up a sequence, and locations within
them.
-
Uses of BasisSymbol in org.biojava.bio.dp
Subinterfaces of BasisSymbol in org.biojava.bio.dpModifier and TypeInterfaceDescriptioninterface
A Dot state.interface
A state in a markov process that has an emission spectrum.interface
A state that contains an entire sub-model.interface
A state in a markov process.Classes in org.biojava.bio.dp that implement BasisSymbolModifier and TypeClassDescriptionfinal class
Start/end state for HMMs.class
A Dot state that you can make and use.class
class
-
Uses of BasisSymbol in org.biojava.bio.program.hmmer
Classes in org.biojava.bio.program.hmmer that implement BasisSymbol -
Uses of BasisSymbol in org.biojava.bio.symbol
Subinterfaces of BasisSymbol in org.biojava.bio.symbolClasses in org.biojava.bio.symbol that implement BasisSymbolModifier and TypeClassDescriptionstatic class
A range of double values.static class
A single double value.class
An atomic symbol consisting only of itself.static class
A single int value.class
A basic implementation of AtomicSymbol.Methods in org.biojava.bio.symbol with parameters of type BasisSymbolModifier and TypeMethodDescriptionboolean
SoftMaskedAlphabet.isMasked
(BasisSymbol s) Determines if aSymbol
is masked.