Package org.biojava.bio.seq.io
Class GenpeptFormat
java.lang.Object
org.biojava.bio.seq.io.GenbankFormat
org.biojava.bio.seq.io.GenpeptFormat
- All Implemented Interfaces:
Serializable
,EventListener
,SequenceFormat
,ParseErrorListener
,ParseErrorSource
Deprecated.
Use org.biojavax.bio.seq.io framework instead
This class is necessitated by the deprecation of
writeSequence(Sequence seq, String format, PrintStream os)
method. Now the format object must be intimately
associated to the format it is handling.
- Author:
- David Huen
- See Also:
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Field Summary
Fields inherited from class org.biojava.bio.seq.io.GenbankFormat
ACCESSION_TAG, AUTHORS_TAG, BASE_COUNT_TAG, CIRCULAR_TAG, COMMENT_TAG, COORDINATE_TAG, DATE_TAG, DEFAULT, DEFINITION_TAG, DIVISION_TAG, END_SEQUENCE_TAG, FEATURE_FLAG, FEATURE_LINE_PREFIX, FEATURE_TAG, GI_TAG, JOURNAL_TAG, KEYWORDS_TAG, LOCUS_TAG, MEDLINE_TAG, ORGANISM_TAG, PUBMED_TAG, REF_ACCESSION_TAG, REFERENCE_TAG, SIZE_TAG, SOURCE_TAG, START_SEQUENCE_TAG, STRAND_NUMBER_TAG, TITLE_TAG, TYPE_TAG, VERSION_TAG
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionDeprecated.getDefaultFormat
returns the String identifier for the default format.Methods inherited from class org.biojava.bio.seq.io.GenbankFormat
addParseErrorListener, BadLineParsed, getElideSymbols, notifyParseErrorEvent, readSequence, removeParseErrorListener, setElideSymbols, writeSequence, writeSequence
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Constructor Details
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GenpeptFormat
public GenpeptFormat()Deprecated.
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Method Details
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getDefaultFormat
Deprecated.Description copied from class:GenbankFormat
getDefaultFormat
returns the String identifier for the default format.- Specified by:
getDefaultFormat
in interfaceSequenceFormat
- Overrides:
getDefaultFormat
in classGenbankFormat
- Returns:
- a
String
.
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