Package org.biojava.bio.dp
Class MagicalState
java.lang.Object
org.biojava.utils.AbstractChangeable
org.biojava.bio.dp.SimpleEmissionState
org.biojava.bio.dp.MagicalState
- All Implemented Interfaces:
Serializable
,Annotatable
,EmissionState
,State
,Trainable
,AtomicSymbol
,BasisSymbol
,Symbol
,Changeable
Start/end state for HMMs.
All MagicalState objects emit over MAGICAL_ALPHABET, which only contains MAGICAL_STATE.
- Author:
- Matthew Pocock
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
Annotatable.AnnotationForwarder
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Field Summary
Fields inherited from class org.biojava.bio.dp.SimpleEmissionState
annotationForwarder, distForwarder
Fields inherited from interface org.biojava.bio.Annotatable
ANNOTATION
Fields inherited from interface org.biojava.bio.dp.EmissionState
ADVANCE, DISTRIBUTION
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Method Summary
Modifier and TypeMethodDescriptionstatic MagicalState
getMagicalState
(Alphabet alphabet, int heads) Methods inherited from class org.biojava.bio.dp.SimpleEmissionState
getAdvance, getAnnotation, getBases, getChangeSupport, getDistribution, getMatches, getName, getSymbols, getToken, registerWithTrainer, setAdvance, setAnnotation, setDistribution, setName
Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener
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Method Details
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getMagicalState
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