Uses of Class
org.biojava.bio.program.gff.IgnoreRecordException
Packages that use IgnoreRecordException
Package
Description
GFF manipulation.
Support for reading and writing GFF3.
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Uses of IgnoreRecordException in org.biojava.bio.program.gff
Methods in org.biojava.bio.program.gff that throw IgnoreRecordExceptionModifier and TypeMethodDescriptionprotected GFFRecord
GFFParser.createRecord
(GFFDocumentHandler handler, List aList, String rest, String comment) Actually turns a list of tokens, some value string and a comment into a GFFRecord and informs handler.int
GFFErrorHandler.invalidEnd
(String token) The `end' field of the GFF entry was not a valid value.int
GFFErrorHandler.SkipRecordErrorHandler.invalidEnd
(String token) int
GFFErrorHandler.invalidFrame
(String token) The `frame' field of the GFF entry was not a valid value.int
GFFErrorHandler.SkipRecordErrorHandler.invalidFrame
(String token) double
GFFErrorHandler.invalidScore
(String token) The `score' field of the GFF entry was not a valid value.double
GFFErrorHandler.SkipRecordErrorHandler.invalidScore
(String token) int
GFFErrorHandler.invalidStart
(String token) The `start' field of the GFF entry was not a valid value.int
GFFErrorHandler.SkipRecordErrorHandler.invalidStart
(String token) GFFErrorHandler.invalidStrand
(String token) The `strand' field of the GFF entry was not a valid value.GFFErrorHandler.SkipRecordErrorHandler.invalidStrand
(String token) -
Uses of IgnoreRecordException in org.biojava.bio.program.gff3
Methods in org.biojava.bio.program.gff3 that throw IgnoreRecordExceptionModifier and TypeMethodDescriptionprotected GFF3Record
GFF3Parser.createRecord
(GFF3DocumentHandler handler, List aList, String rest, String comment, Ontology ontology, Ontology fallBack) Actually turns a list of tokens, some value string and a comment into a GFF3Record and informs handler.