Uses of Interface
org.biojava.bio.dp.ModelTrainer
Packages that use ModelTrainer
Package
Description
Probability distributions over Alphabets.
HMM and Dynamic Programming Algorithms.
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Uses of ModelTrainer in org.biojava.bio.dist
Methods in org.biojava.bio.dist with parameters of type ModelTrainerModifier and TypeMethodDescriptionvoid
PairDistribution.registerWithTrainer
(ModelTrainer trainer) Register this paired distribution with a model trainer. -
Uses of ModelTrainer in org.biojava.bio.dp
Classes in org.biojava.bio.dp that implement ModelTrainerMethods in org.biojava.bio.dp with parameters of type ModelTrainerModifier and TypeMethodDescriptionvoid
SimpleEmissionState.registerWithTrainer
(ModelTrainer trainer) void
Trainable.registerWithTrainer
(ModelTrainer mt) Perform any registration that is necessary with mt.void
WMAsMM.registerWithTrainer
(ModelTrainer modelTrainer) protected abstract double
AbstractTrainer.singleSequenceIteration
(ModelTrainer trainer, SymbolList symList) protected double
BaumWelchSampler.singleSequenceIteration
(ModelTrainer trainer, SymbolList symList) protected double
BaumWelchSampler.singleSequenceIteration
(ModelTrainer trainer, SymbolList symList, ScoreType scoreType) protected double
BaumWelchTrainer.singleSequenceIteration
(ModelTrainer trainer, SymbolList symList)