Class SearchListener.FilterByLength

java.lang.Object
org.biojava.bio.program.ssaha.SearchListener.Wrapper
org.biojava.bio.program.ssaha.SearchListener.FilterByLength
All Implemented Interfaces:
SearchListener
Enclosing interface:
SearchListener

public static final class SearchListener.FilterByLength extends SearchListener.Wrapper
A simple listener that filters out all hits that are too short.
Since:
1.4
Author:
Matthew Pocock
  • Constructor Details

  • Method Details

    • hit

      public void hit(int hitID, int queryOffset, int hitOffset, int hitLength)
      Description copied from interface: SearchListener
      There has been a hit between the query sequence and a database sequence.
      Specified by:
      hit in interface SearchListener
      Overrides:
      hit in class SearchListener.Wrapper
      Parameters:
      hitID - the number of the sequence hit; resolvable by String id = DataStore.seqNameForID(hitID)
      queryOffset - the offset into the query sequence
      hitOffset - the offset into the sequence hit in the database
      hitLength - the number of symbols hit