Uses of Interface
org.biojava.bio.seq.SequenceAnnotator
Packages that use SequenceAnnotator
Package
Description
HMM and Dynamic Programming Algorithms.
The classes and interfaces in this package cover common molecular
biological techniques such as restriction digests and PCR.
GFF manipulation.
Collections of biological sequence data.
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Uses of SequenceAnnotator in org.biojava.bio.dp
Classes in org.biojava.bio.dp that implement SequenceAnnotatorModifier and TypeClassDescriptionclass
Annotates a sequence with hits to a weight-matrix. -
Uses of SequenceAnnotator in org.biojava.bio.molbio
Classes in org.biojava.bio.molbio that implement SequenceAnnotatorModifier and TypeClassDescriptionclass
RestrictionMapper
is a class for annotatingSequence
s withFeature
s which represent restriction sites. -
Uses of SequenceAnnotator in org.biojava.bio.program.gff
Methods in org.biojava.bio.program.gff that return SequenceAnnotatorModifier and TypeMethodDescriptionGFFEntrySet.getAnnotator()
Get an annotator that can add GFF features to a Sequence using the features in this GFFEntrySet.GFFEntrySet.getAnnotator
(boolean checkSeqName) Get an annotator that can add GFF features to a Sequence using the features in this GFFEntrySet. -
Uses of SequenceAnnotator in org.biojava.bio.seq.db
Constructors in org.biojava.bio.seq.db with parameters of type SequenceAnnotator