Package org.biojavax.bio.db.biosql
Class BioSQLFeatureFilter.BySourceTermName
java.lang.Object
org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
org.biojavax.bio.db.biosql.BioSQLFeatureFilter.BySourceTermName
- All Implemented Interfaces:
Serializable
,FeatureFilter
,BioSQLFeatureFilter
- Enclosing interface:
BioSQLFeatureFilter
public static final class BioSQLFeatureFilter.BySourceTermName
extends BioSQLFeatureFilter.HibernateFeatureFilter
Construct one of these to filter features by source (name only - parent ontology
is ignored).
- Since:
- 1.5
- Author:
- Richard Holland
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter
BioSQLFeatureFilter.And, BioSQLFeatureFilter.ByName, BioSQLFeatureFilter.ByNote, BioSQLFeatureFilter.ByNoteTermOnly, BioSQLFeatureFilter.ByRank, BioSQLFeatureFilter.BySequenceName, BioSQLFeatureFilter.BySourceTerm, BioSQLFeatureFilter.BySourceTermName, BioSQLFeatureFilter.ByStrand, BioSQLFeatureFilter.ByTypeTerm, BioSQLFeatureFilter.ByTypeTermName, BioSQLFeatureFilter.ContainedByRichLocation, BioSQLFeatureFilter.HibernateFeatureFilter, BioSQLFeatureFilter.Not, BioSQLFeatureFilter.Or, BioSQLFeatureFilter.OverlapsRichLocation, BioSQLFeatureFilter.Tools
Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter
FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter
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Field Summary
Fields inherited from class org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
and, conjunctAdd, conjunction, disjunctAdd, disjunction, eq, ge, le, not, or
Fields inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter
all, none
Fields inherited from interface org.biojava.bio.seq.FeatureFilter
leaf, top_level
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Constructor Summary
ConstructorsConstructorDescriptionBySourceTermName
(String sourceTermName) Create a BySourceTerm filter that filters in all features with sourceTerm fields having name equal to sourceTermName. -
Method Summary
Modifier and TypeMethodDescriptionboolean
Returns true if the feature has a matching source property.This method returns a Hibernate Criterion object that can be used to query the database.Returns a map of property names (keys) to aliases (values), if the criterion returned by asCriterion() uses aliases at all.boolean
int
hashCode()
toString()
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Constructor Details
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BySourceTermName
Create a BySourceTerm filter that filters in all features with sourceTerm fields having name equal to sourceTermName.- Parameters:
sourceTermName
- the name of the Term to match sourceTerm fields against
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Method Details
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getSourceTermName
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accept
Returns true if the feature has a matching source property.- Parameters:
f
- the Feature to evaluate- Returns:
- true if this feature is to be selected in, or false if it is to be ignored
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asCriterion
Description copied from interface:BioSQLFeatureFilter
This method returns a Hibernate Criterion object that can be used to query the database.- Returns:
- a Hibernate Criterion object representing this filter.
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criterionAliasMap
Description copied from interface:BioSQLFeatureFilter
Returns a map of property names (keys) to aliases (values), if the criterion returned by asCriterion() uses aliases at all. If not, then it must at least return the empty map else you'll get NullPointerExceptions thrown elsewhere.- Specified by:
criterionAliasMap
in interfaceBioSQLFeatureFilter
- Overrides:
criterionAliasMap
in classBioSQLFeatureFilter.HibernateFeatureFilter
- Returns:
- Map a map of property names to aliases used in the criterion.
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equals
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hashCode
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toString
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