Package org.biojavax.bio.seq.io
Interface RichSequenceBuilderFactory
- All Superinterfaces:
SequenceBuilderFactory
- All Known Implementing Classes:
SimpleRichSequenceBuilderFactory
Simple factory for constructing new RichSequenceBuilder objects.
- Since:
- 1.5
- Author:
- Richard Holland, Mark Schreiber
-
Field Summary
FieldsModifier and TypeFieldDescriptionstatic final RichSequenceBuilderFactory
Accessor for the default factory.static final RichSequenceBuilderFactory
Accessor for a factory that produces builders that compress theSymbolList
of aRichSequence
.static final RichSequenceBuilderFactory
Accessor for a factory that produces builders that compress theSymbolList
of aRichSequence
when the length of theSymbolList
exceedsTHRESHOLD
.static final int
The value that will be used as a threshold for theTHRESHOLD
builder. -
Method Summary
Methods inherited from interface org.biojava.bio.seq.io.SequenceBuilderFactory
makeSequenceBuilder
-
Field Details
-
THRESHOLD_VALUE
The value that will be used as a threshold for theTHRESHOLD
builder. Set to 5000.- See Also:
-
FACTORY
Accessor for the default factory. This implementation will not do any compression of a sequence regardless of size. -
PACKED
Accessor for a factory that produces builders that compress theSymbolList
of aRichSequence
. -
THRESHOLD
Accessor for a factory that produces builders that compress theSymbolList
of aRichSequence
when the length of theSymbolList
exceedsTHRESHOLD
.
-