Package org.biojava.bio.seq.io.agave
Class Embl2AgaveAnnotFilter
java.lang.Object
org.biojava.bio.seq.io.agave.SimpleAnnotFilter
org.biojava.bio.seq.io.agave.Embl2AgaveAnnotFilter
- All Implemented Interfaces:
AGAVEAnnotFilter
Map EMBL data into AGAVE format
- Author:
- Hanning Ni Doubletwist Inc
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Field Summary
FieldsFields inherited from class org.biojava.bio.seq.io.agave.SimpleAnnotFilter
SIMPLE_ANNOT_FILTER_FACTORY
Fields inherited from interface org.biojava.bio.seq.io.agave.AGAVEAnnotFilter
BOTH_FORWARD_COMPLEMENT, COMPLEMENT, FORWARD
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Method Summary
Modifier and TypeMethodDescriptiongetAccession
(Annotation annot) getDbId
(Annotation annot) getDescription
(Annotation annot) getKeyword
(Annotation annot) getMolType
(Annotation annot) getNote
(Annotation annot) getOrganism
(Annotation annot) getOS
(Annotation annot) getVersion
(Annotation annot) Methods inherited from class org.biojava.bio.seq.io.agave.SimpleAnnotFilter
getAlignLength, getAlignUnits, getAltIds, getChromNum, getChromosome, getClassifyId, getClassifySystem, getClassifyType, getCloneId, getCloneLibrary, getConfidence, getCreateDate, getEcNumber, getElementId, getElementIds, getExonIds, getFeatureType, getGroupOrder, getIdAlias, getLabel, getMapLocation, getMapPosition, getMatchAlign, getMatchDesc, getMatchRegion, getProperty, getQueryRegion, getRelatedAnnot, getResultType, getSequenceId, getTaxonId, getUpdateDate, getXrefs
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Field Details
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EMBL_AGAVE_ANNOT_FILTER_FACTORY
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Method Details
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getAccession
- Specified by:
getAccession
in interfaceAGAVEAnnotFilter
- Overrides:
getAccession
in classSimpleAnnotFilter
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getKeyword
- Specified by:
getKeyword
in interfaceAGAVEAnnotFilter
- Overrides:
getKeyword
in classSimpleAnnotFilter
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getOrganism
- Specified by:
getOrganism
in interfaceAGAVEAnnotFilter
- Overrides:
getOrganism
in classSimpleAnnotFilter
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getDescription
- Specified by:
getDescription
in interfaceAGAVEAnnotFilter
- Overrides:
getDescription
in classSimpleAnnotFilter
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getNote
- Specified by:
getNote
in interfaceAGAVEAnnotFilter
- Overrides:
getNote
in classSimpleAnnotFilter
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getVersion
- Specified by:
getVersion
in interfaceAGAVEAnnotFilter
- Overrides:
getVersion
in classSimpleAnnotFilter
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getOS
- Specified by:
getOS
in interfaceAGAVEAnnotFilter
- Overrides:
getOS
in classSimpleAnnotFilter
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getMolType
- Specified by:
getMolType
in interfaceAGAVEAnnotFilter
- Overrides:
getMolType
in classSimpleAnnotFilter
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getDbId
- Specified by:
getDbId
in interfaceAGAVEAnnotFilter
- Overrides:
getDbId
in classSimpleAnnotFilter
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