Uses of Interface
org.biojavax.RankedCrossRef
Packages that use RankedCrossRef
Package
Description
The Biojava extensions packages, classes that extend the core biojava
functionality
Classes to represent biological entities and their relationships.
Rich implementations of Sequences, Locations and Features.
Classes to support the I/O of RichSequence and
Bioentry objects.
Extensions to the biojava ontology model that represent BioSQL ontology.
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Uses of RankedCrossRef in org.biojavax
Classes in org.biojavax that implement RankedCrossRefModifier and TypeClassDescriptionclass
Simple implementation of RankedCrossRef.Methods in org.biojavax that return types with arguments of type RankedCrossRefModifier and TypeMethodDescriptionRankedCrossRefable.getRankedCrossRefs()
Returns the set of all ranked cross references associated with an object.Methods in org.biojavax with parameters of type RankedCrossRefModifier and TypeMethodDescriptionvoid
RankedCrossRefable.addRankedCrossRef
(RankedCrossRef crossref) Adds a ranked cross reference to the existing set.void
RankedCrossRefable.removeRankedCrossRef
(RankedCrossRef crossref) Removes a ranked cross reference from the existing set.Method parameters in org.biojavax with type arguments of type RankedCrossRefModifier and TypeMethodDescriptionvoid
RankedCrossRefable.setRankedCrossRefs
(Set<RankedCrossRef> crossrefs) Sets the ranked cross references associated with an object. -
Uses of RankedCrossRef in org.biojavax.bio
Methods in org.biojavax.bio that return types with arguments of type RankedCrossRefModifier and TypeMethodDescriptionSimpleBioEntry.getRankedCrossRefs()
Returns the set of all ranked cross references associated with an object.Methods in org.biojavax.bio with parameters of type RankedCrossRefModifier and TypeMethodDescriptionvoid
SimpleBioEntry.addRankedCrossRef
(RankedCrossRef crossref) Adds a ranked cross reference to the existing set.void
SimpleBioEntry.removeRankedCrossRef
(RankedCrossRef crossref) Removes a ranked cross reference from the existing set.Method parameters in org.biojavax.bio with type arguments of type RankedCrossRefModifier and TypeMethodDescriptionvoid
SimpleBioEntry.setRankedCrossRefs
(Set<RankedCrossRef> rankedcrossrefs) -
Uses of RankedCrossRef in org.biojavax.bio.seq
Methods in org.biojavax.bio.seq that return types with arguments of type RankedCrossRefModifier and TypeMethodDescriptionSimpleRichFeature.getRankedCrossRefs()
Returns the set of all ranked cross references associated with an object.Methods in org.biojavax.bio.seq with parameters of type RankedCrossRefModifier and TypeMethodDescriptionvoid
SimpleRichFeature.addRankedCrossRef
(RankedCrossRef crossref) Adds a ranked cross reference to the existing set.void
SimpleRichFeature.removeRankedCrossRef
(RankedCrossRef crossref) Removes a ranked cross reference from the existing set. -
Uses of RankedCrossRef in org.biojavax.bio.seq.io
Methods in org.biojavax.bio.seq.io with parameters of type RankedCrossRefModifier and TypeMethodDescriptionvoid
DebuggingRichSeqIOListener.setRankedCrossRef
(RankedCrossRef crossRef) void
RichSeqIOAdapter.setRankedCrossRef
(RankedCrossRef crossRef) void
RichSeqIOListener.setRankedCrossRef
(RankedCrossRef crossRef) Call back method so the event emitter can tell the listener about a cross reference.void
SimpleRichSequenceBuilder.setRankedCrossRef
(RankedCrossRef ref) Call back method so the event emitter can tell the listener about a cross reference. -
Uses of RankedCrossRef in org.biojavax.ontology
Methods in org.biojavax.ontology with parameters of type RankedCrossRefModifier and TypeMethodDescriptionvoid
SimpleComparableTerm.addRankedCrossRef
(RankedCrossRef crossref) Adds a ranked cross reference to the existing set.void
SimpleComparableTerm.removeRankedCrossRef
(RankedCrossRef crossref) Removes a ranked cross reference from the existing set.