Uses of Interface
org.biojava.bio.symbol.CodonPref
Packages that use CodonPref
Package
Description
Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of CodonPref in org.biojava.bio.symbol
Classes in org.biojava.bio.symbol that implement CodonPrefModifier and TypeClassDescriptionclass
a simple no-frills implementation of the CodonPref object that encapsulates codon preference data.Methods in org.biojava.bio.symbol that return CodonPrefModifier and TypeMethodDescriptionCodonPrefFilter.ByName.getCodonPref()
static CodonPref
CodonPrefTools.getCodonPreference
(String id) get the specified codon preference.static CodonPref[]
CodonPrefTools.readFromXML
(InputStream prefStream) static CodonPref
CodonPrefTools.readFromXML
(InputStream prefStream, String name) reads a specified CodonPref from an file.Methods in org.biojava.bio.symbol with parameters of type CodonPrefModifier and TypeMethodDescriptionvoid
void
void
void
handles storage of a CodonPref objectstatic void
CodonPrefTools.writeToXML
(CodonPref codonPref, PrintWriter writer) write out a specified CodonPref object in XML format.