Uses of Interface
org.biojavax.ga.Organism
Packages that use Organism
Package
Description
Classes to provide a genetic algorithm framework
GA functions
Default implementations and abstract classes.
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Uses of Organism in org.biojavax.ga
Methods in org.biojavax.ga that return OrganismModifier and TypeMethodDescriptionPopulation.getOrganismByName
(String name) Gets the specified organismCreates a replica of thisOrganism
with a new name.Methods in org.biojavax.ga with parameters of type OrganismModifier and TypeMethodDescriptionvoid
Population.addOrganism
(Organism org) Adds an Organism to the Populationvoid
Population.addOrganisms
(Organism[] orgs) Adds several organisms to the populationvoid
Population.removeOrganism
(Organism org) Kills off the organismvoid
Population.removeOrganisms
(Organism[] orgs) Removes all theOrganisms
inorgs
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Uses of Organism in org.biojavax.ga.functions
Methods in org.biojavax.ga.functions with parameters of type OrganismModifier and TypeMethodDescriptiondouble[]
FitnessFunction.fitness
(Organism org, Population pop, GeneticAlgorithm genAlg) Calculates the fitness oforg
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Uses of Organism in org.biojavax.ga.impl
Classes in org.biojavax.ga.impl that implement OrganismModifier and TypeClassDescriptionclass
Abstract implementation of Organism.class
A Simple Haploid Organism implementationMethods in org.biojavax.ga.impl that return OrganismMethods in org.biojavax.ga.impl with parameters of type OrganismModifier and TypeMethodDescriptionfinal void
AbstractPopulation.addOrganism
(Organism org) protected abstract void
AbstractPopulation.addOrganismImpl
(Organism org) protected void
SimplePopulation.addOrganismImpl
(Organism orgToAdd) final void
AbstractPopulation.addOrganisms
(Organism[] orgs) final void
AbstractPopulation.removeOrganism
(Organism org) protected abstract void
AbstractPopulation.removeOrganismImpl
(Organism org) protected void
SimplePopulation.removeOrganismImpl
(Organism orgToRemove) final void
AbstractPopulation.removeOrganisms
(Organism[] orgs) Constructors in org.biojavax.ga.impl with parameters of type OrganismModifierConstructorDescriptionprotected
AbstractOrganism
(Organism org, String name) SimpleOrganism
(Organism org, String name)