Package org.biojava.bio.program.ssbind
Class SeqSimilarityStAXHandler
java.lang.Object
org.biojava.utils.stax.StAXContentHandlerBase
org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
- All Implemented Interfaces:
StAXContentHandler
- Direct Known Subclasses:
AlignmentStAXHandler
,HeaderStAXHandler
,HitStAXHandler
,HSPStAXHandler
,HSPSummaryStAXHandler
SeqSimilarityStAXHandler
is a base class for creating
modular StAX handlers which send callbacks to a
SeqSimilarityStAXAdapter
.- Since:
- 1.3
- Author:
- Keith James
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Field Summary
Fields -
Constructor Summary
ConstructorsConstructorDescriptionSeqSimilarityStAXHandler
(SeqSimilarityStAXAdapter ssContext) Creates a newSeqSimilarityStAXHandler
which simply maintains a list ofStAXHandlerBinding
s and delegates to any suitableStAXContentHandler
bound by one of them. -
Method Summary
Modifier and TypeMethodDescriptionprotected void
addHandler
(ElementRecognizer recognizer, StAXHandlerFactory factory) void
endElement
(String nsURI, String localName, String qName, StAXContentHandler handler) protected void
handleEndElement
(String nsURI, String localName, String qName) protected void
handleStartElement
(String nsURI, String localName, String qName, Attributes attrs) void
startElement
(String nsURI, String localName, String qName, Attributes attrs, DelegationManager dm) Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
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Field Details
-
ssContext
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-
Constructor Details
-
SeqSimilarityStAXHandler
Creates a newSeqSimilarityStAXHandler
which simply maintains a list ofStAXHandlerBinding
s and delegates to any suitableStAXContentHandler
bound by one of them.
-
-
Method Details
-
startElement
public void startElement(String nsURI, String localName, String qName, Attributes attrs, DelegationManager dm) throws SAXException - Specified by:
startElement
in interfaceStAXContentHandler
- Overrides:
startElement
in classStAXContentHandlerBase
- Throws:
SAXException
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endElement
public void endElement(String nsURI, String localName, String qName, StAXContentHandler handler) throws SAXException - Specified by:
endElement
in interfaceStAXContentHandler
- Overrides:
endElement
in classStAXContentHandlerBase
- Throws:
SAXException
-
addHandler
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handleStartElement
protected void handleStartElement(String nsURI, String localName, String qName, Attributes attrs) throws SAXException - Throws:
SAXException
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handleEndElement
- Throws:
SAXException
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