Uses of Interface
org.biojava.bio.seq.FeatureRealizer
Packages that use FeatureRealizer
Package
Description
Classes and interfaces for defining biological sequences and informatics
objects.
Standard in-memory implementations of
Sequence
and
Feature
.-
Uses of FeatureRealizer in org.biojava.bio.seq
Classes in org.biojava.bio.seq that implement FeatureRealizerModifier and TypeClassDescriptionclass
FeatureRealizer which uses a lookup table to map template classes to implementations.Methods in org.biojava.bio.seq with parameters of type FeatureRealizerModifier and TypeMethodDescriptionstatic ViewSequence
SequenceTools.view
(Sequence seq, FeatureRealizer fr) Creates a new Sequence with the data of the old but with a different FeatureRealizer that will be applied to new Features.Constructors in org.biojava.bio.seq with parameters of type FeatureRealizerModifierConstructorDescriptionCircularView
(Sequence seq, FeatureRealizer fr) SimpleFeatureRealizer
(FeatureRealizer fallBack) -
Uses of FeatureRealizer in org.biojava.bio.seq.impl
Fields in org.biojava.bio.seq.impl declared as FeatureRealizerModifier and TypeFieldDescriptionstatic final FeatureRealizer
FeatureImpl.DEFAULT
Default implementation of FeatureRealizer, which wraps simple implementations of Feature and StrandedFeature.Methods in org.biojava.bio.seq.impl that return FeatureRealizerModifier and TypeMethodDescriptionSimpleSequenceFactory.getFeatureRealizer()
Returns the FeatureRealizer set by "setFeatureRealizer".Methods in org.biojava.bio.seq.impl with parameters of type FeatureRealizerModifier and TypeMethodDescriptionvoid
SimpleSequenceFactory.setFeatureRealizer
(FeatureRealizer fr) Set the FeatureRealizer used by new sequences created by this factory.Constructors in org.biojava.bio.seq.impl with parameters of type FeatureRealizerModifierConstructorDescriptionSimpleSequence
(SymbolList sym, String urn, String name, Annotation annotation, FeatureRealizer realizer) Create a SimpleSequence using a specified FeatureRealizer.ViewSequence
(Sequence seq, FeatureRealizer fr) Construct a view onto a sequence, using a specific FeatureRealizer.