Package org.biojava.bio.program.unigene
package org.biojava.bio.program.unigene
Objects for representing Unigene clusters.
Description
Unigene is a database of ESTs from different organisms and the libraries they were extracted from. This package provides an API for working with Unigene, including the ability to develop your own custom parsers, Objects and Interfaces for representing Unigene records and implementations that index the Unigene download flat files, or an SQL schema.
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ClassDescriptionA UnigeneFactory that will use flat-file indexing of the unigene ascii-art files.An implementatoin of UnigeneFactory that manages it's data in an SQL database.A single unigene cluster.A database of Unigene clusters.Objects that can be used to produce a
UnigeneDB
instance given a URL.Usefull tools for working with Unigene.