Uses of Interface
org.biojavax.bio.seq.Position
Packages that use Position
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Uses of Position in org.biojavax.bio.seq
Classes in org.biojavax.bio.seq that implement PositionModifier and TypeClassDescriptionclass
A simple implementation of the Position interface.Fields in org.biojavax.bio.seq declared as PositionModifier and TypeFieldDescriptionstatic final Position
Position.EMPTY_POSITION
The empty position lies nowhere.Methods in org.biojavax.bio.seq that return PositionModifier and TypeMethodDescriptionEmptyRichLocation.getMaxPosition()
Retrieves the end position of this location.MultiSourceCompoundRichLocation.getMaxPosition()
Retrieves the end position of this location.RichLocation.getMaxPosition()
Retrieves the end position of this location.SimpleRichLocation.getMaxPosition()
Retrieves the end position of this location.EmptyRichLocation.getMinPosition()
Retrieves the start position of this location.MultiSourceCompoundRichLocation.getMinPosition()
Retrieves the start position of this location.RichLocation.getMinPosition()
Retrieves the start position of this location.SimpleRichLocation.getMinPosition()
Retrieves the start position of this location.protected Position
protected Position
Position.translate
(int distance) Takes this position and returns a copy translated by 'distance' bases.SimplePosition.translate
(int distance) Takes this position and returns a copy translated by 'distance' bases.Methods in org.biojavax.bio.seq with parameters of type PositionModifier and TypeMethodDescriptionint
Resolves the maximum possible base for this position.int
Resolves the maximum possible base for this position.int
Resolves the maximum possible base for this position.int
Resolves the maximum possible base for this position.int
Resolves the minimum possible base for this position.int
Resolves the minimum possible base for this position.int
Resolves the minimum possible base for this position.int
Resolves the minimum possible base for this position.protected Position
protected Position
protected void
SimpleRichLocation.setMaxPosition
(Position max) protected void
SimpleRichLocation.setMinPosition
(Position min) Constructors in org.biojavax.bio.seq with parameters of type PositionModifierConstructorDescriptionSimpleRichLocation
(Position pos, int rank) Creates a new instance of SimpleRichSequenceLocation that points to a single position on the positive strand.SimpleRichLocation
(Position pos, int rank, RichLocation.Strand strand) Creates a new instance of SimpleRichSequenceLocation that points to a single position.SimpleRichLocation
(Position pos, int rank, RichLocation.Strand strand, CrossRef crossRef) Creates a new instance of SimpleRichSequenceLocation that points to a single position on another sequence.SimpleRichLocation
(Position min, Position max, int rank) Creates a new instance of SimpleRichSequenceLocation that points to a range position on the positive strand.SimpleRichLocation
(Position min, Position max, int rank, RichLocation.Strand strand) Creates a new instance of SimpleRichSequenceLocation that points to a range position.SimpleRichLocation
(Position min, Position max, int rank, RichLocation.Strand strand, CrossRef crossRef) Creates a new instance of SimpleRichSequenceLocation that points to a range position on another sequence.