Uses of Interface
org.biojava.bio.program.ssaha.SearchListener
Packages that use SearchListener
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Uses of SearchListener in org.biojava.bio.program.ssaha
Classes in org.biojava.bio.program.ssaha that implement SearchListenerModifier and TypeClassDescriptionclass
A listener that merges overlapping hits and culls all hits under a given length.static final class
A SearchListener that prints events out to a PrintStream.static final class
A simple listener that filters out all hits that are too short.static final class
A SearchListener that passes events on to two delegate listeners.static class
A simple wrapper implementation.Methods in org.biojava.bio.program.ssaha with parameters of type SearchListenerModifier and TypeMethodDescriptionvoid
CompactedDataStore.fireHits
(int word, int offset, SearchListener listener) void
CompactedDataStore.search
(String seqID, SymbolList symList, SearchListener listener) void
DataStore.search
(String id, SymbolList symList, SearchListener listener) Search the DataStore with a symbol list.Constructors in org.biojava.bio.program.ssaha with parameters of type SearchListenerModifierConstructorDescriptionFilterByLength
(SearchListener delegate, int minLength) HitMerger
(SearchListener delegate, int minLength) Build a new HitMerger that will pass events on to a delegate.Tee
(SearchListener d1, SearchListener d2) Wrapper
(SearchListener delegate)