Uses of Interface
org.biojava.bio.dp.EmissionState
Packages that use EmissionState
Package
Description
HMM and Dynamic Programming Algorithms.
Tools for working with profile Hidden Markov Models from the HMMer package.
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Uses of EmissionState in org.biojava.bio.dp
Classes in org.biojava.bio.dp that implement EmissionStateModifier and TypeClassDescriptionfinal class
Start/end state for HMMs.class
Methods in org.biojava.bio.dp that return EmissionState -
Uses of EmissionState in org.biojava.bio.program.hmmer
Classes in org.biojava.bio.program.hmmer that implement EmissionStateMethods in org.biojava.bio.program.hmmer that return EmissionStateModifier and TypeMethodDescriptionFullHmmerProfileHMM.cState()
Gets the c loop stateFullHmmerProfileHMM.jState()
Gets the J loop stateprotected EmissionState
HmmerProfileHMM.makeNewInsertState
(String str, Annotation ann, int[] adv, Distribution dis) protected EmissionState
HmmerProfileHMM.makeNewMatchState
(String str, Annotation ann, int[] adv, Distribution dis) FullHmmerProfileHMM.nState()
Gets the n loop state