Uses of Class
org.biojava.bio.seq.io.agave.StAXContentHandlerBase
Packages that use StAXContentHandlerBase
Package
Description
Classes for converting between AGAVE XML and BioJava objects.
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Uses of StAXContentHandlerBase in org.biojava.bio.seq.io.agave
Subclasses of StAXContentHandlerBase in org.biojava.bio.seq.io.agaveModifier and TypeClassDescriptionclass
Deals with alternate sequence IDsclass
class
class
Handles the AGAVE <bio_sequence> elementclass
Handles the AGAVE <bio_sequence> elementclass
Handles the AGAVE <cds> elementclass
Handles the AGAVE <chromosome> elementclass
class
class
class
Handles the AGAVE <contig> elementclass
Deals with database crossreferencesclass
Deals with database crossreferencesclass
class
class
class
class
class
class
Handles the root AGAVE element modified for agave formatclass
class
Deals with AGAVE keywordsclass
class
class
Deals with match_alignclass
Deals with match_descclass
Deals with match_regionclass
Handles the AGAVE <mrna> elementclass
Deals with noteclass
Handles the AGAVE <predicted_protein> elementclass
class
class
class
class
class
sci_propertyclass
seq_featureclass
seq_locationclass
sequence_mapclass
Deals with sequence codeclass
transcriptclass
unordered_fragmentsclass
Moves view attributes into annotation properties.class
handle AGAVE xrefclass
xref_propertyclass
Deals with database crossreferences (xrefs)class
StAX handler shamelessly ripped off from Thomas Down's XFFFeatureSetHandler.class
StAX handler shamelessly ripped off from Thomas Down's XFFFeatureSetHandler.