Uses of Interface
org.biojava.bio.alignment.Alignment

Packages that use Alignment
Package
Description
Classes to generate and describe sequence alignments.
Interfaces and classes for chromatogram data, as produced by DNA sequencing equipment.
Probability distributions over Alphabets.
HMM and Dynamic Programming Algorithms.
ABI Trace Handling.
Parser for Phred output
Interfaces and classes for representing sequence similarity search results.
The classes and interfaces for defining sequence similarity and honology.
Standard in-memory implementations of Sequence and Feature.
Classes and interfaces for processing and producing flat-file representations of sequences.
Representation of the Symbols that make up a sequence, and locations within them.
Classes to support the reading and writing of PHYLIP format.