Package org.biojava.bio.symbol
Class AbstractRangeLocation
java.lang.Object
org.biojava.bio.symbol.AbstractLocation
org.biojava.bio.symbol.AbstractRangeLocation
- All Implemented Interfaces:
Serializable
,Location
- Direct Known Subclasses:
FuzzyLocation
,PointLocation
,RangeLocation
Base class for simple contiguous Location implementations.
Just implement
getMin
and getMax
, and translate
..- Author:
- Matthew Pocock, Keith James
- See Also:
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Field Summary
Fields inherited from interface org.biojava.bio.symbol.Location
empty, full, naturalOrder
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionReturn an Iterator over the set of maximal contiguous sub-locations.boolean
contains
(int p) Checks if this location contains a point.boolean
Determine if a Location is contiguous.symbols
(SymbolList seq) Return the symbols in a sequence that fall within this range.Methods inherited from class org.biojava.bio.symbol.AbstractLocation
contains, equals, getDecorator, hashCode, intersection, newInstance, overlaps, union
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Constructor Details
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AbstractRangeLocation
public AbstractRangeLocation()
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Method Details
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blockIterator
Description copied from interface:Location
Return an Iterator over the set of maximal contiguous sub-locations.Given any location, it can be considered to contain zero or more maximal contiguous blocks of width 1 or greater. The empty location is composed from nothing. A contiguous location is composed from itself. A non-contiguous location is composed from contiguous blocks seperated by gaps.
This method should return an Iterator over these maximally contiguous blocks starting with the left-most block, and finishing at the right-most block.
- Returns:
- an Iterator over Location objects that are the maximally contiguous set of locations contained within this location
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isContiguous
Description copied from interface:Location
Determine if a Location is contiguous.- Returns:
true
if and only if this Location contains every point frommin
tomax
inclusive.
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symbols
Description copied from interface:Location
Return the symbols in a sequence that fall within this range.- Parameters:
seq
- the SymbolList to process- Returns:
- the SymbolList containing the symbols in seq in this range
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contains
Description copied from interface:Location
Checks if this location contains a point.- Parameters:
p
- the point to check- Returns:
- true if this contains p, otherwise false
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