Package org.biojava.directory
Interface SequenceDBProvider
- All Known Implementing Classes:
BioFetchSequenceDBProvider
,BioSQLSequenceDBProvider
,FlatSequenceDBProvider
public interface SequenceDBProvider
Interfaces for named resources that can provide sequences via a
database given some configuration information as defined by the
OBDA standard.
- Author:
- Thomas Down, Keith James, Matthew Pocock
-
Method Summary
Modifier and TypeMethodDescriptiongetName()
The name of this provider.getSequenceDB
(Map config) Get a sequence database.
-
Method Details
-
getName
The name of this provider.- Returns:
- the provider's name.
-
getSequenceDB
Get a sequence database.- Parameters:
config
- a Map containing key-value pairs identifying the database to resolve.- Returns:
- a SequenceDBLite that was resolved.
- Throws:
RegistryException
BioException
-