Uses of Interface
org.biojava.stats.svm.SVMKernel
Packages that use SVMKernel
Package
Description
Support Vector Machine classification and regression.
Tools for use of the SVM package.
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Uses of SVMKernel in org.biojava.stats.svm
Classes in org.biojava.stats.svm that implement SVMKernelModifier and TypeClassDescriptionclass
Caches the results of a nested kernel so that k(a, b) need only be calculated once.class
Adds a class specific constant to k(x, x).class
Caches the leading diagonal of a kernel matrix.class
Deprecated.Just use SparseVector.kernel instead...class
This kernel computes the sum of the dot products between items of two lists at corresponding indexes.class
Encapsulates a kernel that wraps another kernel up.class
Performs a normalization on the results of a nested kernel.class
This kernel computes all possible products of order features in feature space.class
This kernel computes the radial base kernel that corresponds to a gausian distribution.class
This kernel implements a three layer neural net.static class
A version of the standard dot-product kernel that scales each column independently.Fields in org.biojava.stats.svm declared as SVMKernelMethods in org.biojava.stats.svm that return SVMKernelModifier and TypeMethodDescriptionSimpleSVMClassifierModel.getKernel()
SVMClassifierModel.getKernel()
SVMRegressionModel.getKernel()
NestedKernel.getNestedKernel()
Retrieve the currently nested SVMKernel.SigmoidKernel.getWrappedKernel()
Methods in org.biojava.stats.svm with parameters of type SVMKernelModifier and TypeMethodDescriptionvoid
void
CachingKernel.setNestedKernel
(SVMKernel k) void
DiagonalCachingKernel.setNestedKernel
(SVMKernel k) Set the kernel to nest.void
NestedKernel.setNestedKernel
(SVMKernel k) Set the SVMKernel to nest to k.void
SigmoidKernel.setWrappedKernel
(SVMKernel kernel) SMOTrainer.trainModel
(SVMTarget target, SVMKernel kernel, TrainingListener l) Constructors in org.biojava.stats.svm with parameters of type SVMKernelModifierConstructorDescriptionCreates a new DiagonalCachingKernel that nests k.Create a new NestedKernel that wraps k.PolynomialKernel
(SVMKernel nested, double order, double a, double c) RadialBaseKernel
(SVMKernel nested, double width) SimpleSVMClassifierModel
(SVMKernel kernel) SimpleSVMClassifierModel
(SVMKernel kernel, Collection items) SimpleSVMClassifierModel
(SVMKernel kernel, SVMTarget target) -
Uses of SVMKernel in org.biojava.stats.svm.tools
Classes in org.biojava.stats.svm.tools that implement SVMKernelModifier and TypeClassDescriptionclass
Computes the dot-product of two suffix-trees as the sum of the products of the counts of all nodes they have in common.Fields in org.biojava.stats.svm.tools declared as SVMKernelModifier and TypeFieldDescriptionstatic SVMKernel
ClassifierExample.PointClassifier.polyKernel
static SVMKernel
ClassifierExample.PointClassifier.rbfKernel
Methods in org.biojava.stats.svm.tools that return SVMKernelModifier and TypeMethodDescriptionClassifierExample.PointClassifier.getKernel()
Retrieve the currently used kernelMethods in org.biojava.stats.svm.tools with parameters of type SVMKernel