Uses of Class
org.biojava.bio.symbol.IntegerAlphabet.IntegerSymbol
Packages that use IntegerAlphabet.IntegerSymbol
Package
Description
Parser for Phred output
Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of IntegerAlphabet.IntegerSymbol in org.biojava.bio.program.phred
Methods in org.biojava.bio.program.phred that return IntegerAlphabet.IntegerSymbolModifier and TypeMethodDescriptionstatic final IntegerAlphabet.IntegerSymbol
PhredTools.integerSymbolFromPhred
(Symbol phredSym) Retrives the IntegerSymbol component of the Phred BasisSymbol from the PHRED alphabet.Methods in org.biojava.bio.program.phred with parameters of type IntegerAlphabet.IntegerSymbolModifier and TypeMethodDescriptionstatic double
PhredTools.pFromQuality
(IntegerAlphabet.IntegerSymbol quality) Calculates the probability of an error from the quality score via the formula P_e = 10**(QV/-10) -
Uses of IntegerAlphabet.IntegerSymbol in org.biojava.bio.symbol
Methods in org.biojava.bio.symbol that return IntegerAlphabet.IntegerSymbol