Uses of Interface
org.biojava.bio.symbol.SoftMaskedAlphabet.MaskingDetector
Packages that use SoftMaskedAlphabet.MaskingDetector
Package
Description
Representation of the Symbols that make up a sequence, and locations within
them.
-
Uses of SoftMaskedAlphabet.MaskingDetector in org.biojava.bio.symbol
Classes in org.biojava.bio.symbol that implement SoftMaskedAlphabet.MaskingDetectorModifier and TypeClassDescriptionstatic class
Fields in org.biojava.bio.symbol declared as SoftMaskedAlphabet.MaskingDetectorModifier and TypeFieldDescriptionstatic final SoftMaskedAlphabet.MaskingDetector
SoftMaskedAlphabet.MaskingDetector.DEFAULT
Methods in org.biojava.bio.symbol that return SoftMaskedAlphabet.MaskingDetectorModifier and TypeMethodDescriptionSoftMaskedAlphabet.getMaskingDetector()
Getter for theMaskingDetector
Methods in org.biojava.bio.symbol with parameters of type SoftMaskedAlphabet.MaskingDetectorModifier and TypeMethodDescriptionstatic SoftMaskedAlphabet
SoftMaskedAlphabet.getInstance
(FiniteAlphabet alphaToMask, SoftMaskedAlphabet.MaskingDetector maskingDetector) Creates a compound alphabet that is a hybrid of the alphabet that is to be soft masked and a binary alphabet that indicates if anySymbol
is soft masked or not.