Uses of Interface
org.biojava.bio.seq.db.SequenceDBInstallation
Packages that use SequenceDBInstallation
Package
Description
Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
Collections of biological sequence data.
-
Uses of SequenceDBInstallation in org.biojava.bio.program.ssbind
Fields in org.biojava.bio.program.ssbind declared as SequenceDBInstallationMethods in org.biojava.bio.program.ssbind that return SequenceDBInstallationModifier and TypeMethodDescriptionViewSequenceFactory.getSubjectDBInstallation()
getSubjectDBInstallation
returns the installation in which all the databases searched may be found.Methods in org.biojava.bio.program.ssbind with parameters of type SequenceDBInstallationModifier and TypeMethodDescriptionvoid
BlastLikeSearchBuilder.setSubjectDBInstallation
(SequenceDBInstallation subjectDBs) setSubjectDBInstallation
sets the subject database holder to a specific installation.void
ViewSequenceFactory.setSubjectDBInstallation
(SequenceDBInstallation subjectDBs) setSubjectDBInstallation
sets the subject database holder to a specific installation.Constructors in org.biojava.bio.program.ssbind with parameters of type SequenceDBInstallationModifierConstructorDescriptionBlastLikeSearchBuilder
(List target, SequenceDB querySeqHolder, SequenceDBInstallation subjectDBs) Creates a newBlastLikeSearchBuilder
which will instantiate results into theList
target. -
Uses of SequenceDBInstallation in org.biojava.bio.seq.db
Classes in org.biojava.bio.seq.db that implement SequenceDBInstallationModifier and TypeClassDescriptionclass
DummySequenceDBInstallation
is an implementation which returns the sameDummySequenceDB
instance regardless of the identifier used to retrieve a database.class
This class is an implementation of interface SequenceDBInstallation that manages a set of SequenceDB objects.