Package org.biojava.bio.symbol
Interface WobbleDistribution
public interface WobbleDistribution
an object to return statistics about
the frequency of the wobble base
in a set of synonymous codons.
- Since:
- 1.3
- Author:
- David Huen
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Method Summary
Modifier and TypeMethodDescriptionreturns the frequency with which synonymous codons start with a specified pair of bases.returns Set containing the nonWobbleBases that occur in codons that encode this residuereturns the residue encoded by this WobbleDistributiongetWobbleFrequency
(Symbol nonWobbleBases) returns the frequency of a specific wobble base in a set of synonymous codons that start with the same two bases.
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Method Details
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getResidue
returns the residue encoded by this WobbleDistribution -
getNonWobbleBases
returns Set containing the nonWobbleBases that occur in codons that encode this residue -
getFrequencyOfNonWobbleBases
returns the frequency with which synonymous codons start with a specified pair of bases. -
getWobbleFrequency
returns the frequency of a specific wobble base in a set of synonymous codons that start with the same two bases. (sums to one over this set).
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