Uses of Package
org.biojava.bio.gui.sequence
Packages that use org.biojava.bio.gui.sequence
Package
Description
Graphical displays of biological sequences and associated annotations.
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Classes in org.biojava.bio.gui.sequence used by org.biojava.bio.gui.sequenceClassDescription
AbstractBeadRenderer
is a an abstract base class for the creation ofFeatureRenderer
s which use a 'string of beads' metaphor for displaying features.A SequenceRenderer that renders a set of Features that match a FeatureFilter in such a way that they do not overlap in the display.BeadFeatureRenderer
s use a 'string of beads' metaphor for displaying features.Render information from a CircularRendererContext onto a graphics context.A context providing information for rendering sequences into circular coordinate systems.A closure that allows AbstractPeptideDigestRenderer implementations to obtain the features of the rendered sequence.A FeatureRenderer that renders a particular Glyph for Features accepted by a particular FeatureFilterImageMap
represents a collection of image map hotspots.HotSpot
s represent an image map hotspot.ImageMapRenderer
s create strings representingFeature
s suitable for use in HTML image maps.The interface for things that can render labels for a line of information about a sequence.LayeredRenderer
handles the lane offsets forMultiLineRender
s.MultiLineRenderer
is aSequenceRenderer
which collects a number of otherSequenceRenderer
s each of which render their own view of aSequence
.This is a dummy interface to permit identification of renderers whose output is to be overlaid along the lines of the Marker Interface pattern.PairwiseRenderContext
encapsulates information required for the rendering of a pair of sequences.PairwiseSequenceRenderer
s render information about the relationship between two sequences.RectangularBeadRenderer
renders features as simple rectangles.A panel that displays a Sequence.A context within which sequence information may be rendered.The metric object for the 'border' area - the area between the extent of the rendered area and the beginning or end of the sequence.The interface for things that can render a line of information about a sequence.An implementation of SequenceRenderer that delegates rendering to another renderer.An event indicating that a mouse gesture was recognised within a widget that renders sequences.Class that handles drawing in six frames for other classes.A feature renderer that draws non-contiguous features as a set of boxes joined by zig-zags.