Uses of Package
org.biojavax.bio.seq.io
Packages that use org.biojavax.bio.seq.io
Package
Description
Interfaces to NCBI data.
Rich implementations of Sequences, Locations and Features.
Classes to support the I/O of RichSequence and
Bioentry objects.
-
Classes in org.biojavax.bio.seq.io used by org.biojavax.bio.db.ncbiClassDescriptionSimple factory for constructing new RichSequenceBuilder objects.
-
Classes in org.biojavax.bio.seq.io used by org.biojavax.bio.seqClassDescriptionThis class is used by
FastaFormat
to determine which fields are in the fasta header.Simple factory for constructing new RichSequenceBuilder objects. -
Classes in org.biojavax.bio.seq.io used by org.biojavax.bio.seq.ioClassDescriptionThis class is used by
FastaFormat
to determine which fields are in the fasta header.This class implements all methods of RichSeqIOListener and takes no action.An interface for classes that listen to BioEntry or RichSequence I/O streams.An interface for objects that can build RichSequences.Simple factory for constructing new RichSequenceBuilder objects.Allows a file format to be read/written as RichSequences.Provides a basic format with simple things like line-widths precoded.Provides the basic implementation required for simple header/footer-less files such as Genbank.