Interface BioPattern

All Known Implementing Classes:
MaxMismatchPattern, SeqContentPattern

public interface BioPattern
Author:
Matthew Pocock
  • Method Summary

    Modifier and Type
    Method
    Description
    Get a matcher that will use these parameters to search a SymbolList.
  • Method Details

    • matcher

      Get a matcher that will use these parameters to search a SymbolList.

      The resulting BioMatcher is independant of this BioPattern. In particular, calling any mutator methods on this pattern will not affect the matcher.

      Parameters:
      symList - the SymbolList to match against
      Returns:
      a BioMatcher that will perform the search
      Throws:
      IllegalAlphabetException - if symList is not over the right alphabet