Package org.biojava.bio.seq.io
Class FastaDescriptionLineParser
java.lang.Object
org.biojava.bio.seq.io.SequenceBuilderFilter
org.biojava.bio.seq.io.FastaDescriptionLineParser
- All Implemented Interfaces:
SeqIOListener
,SequenceBuilder
Deprecated.
Use org.biojavax.bio.seq.io.FastaFormat
Simple filter which performs a default extraction of data from
the description lines of FASTA files. Behaviour is similar
to DefaultDescriptionReader in the old I/O framework.
- Since:
- 1.1
- Author:
- Thomas Down
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Nested Class Summary
Nested ClassesModifier and TypeClassDescriptionstatic class
Deprecated.Factory which wraps SequenceBuilders in a FastaDescriptionLineParser -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
addSequenceProperty
(Object key, Object value) Deprecated.Notify the listener of a sequence-wide property.Methods inherited from class org.biojava.bio.seq.io.SequenceBuilderFilter
addFeatureProperty, addSymbols, endFeature, endSequence, getDelegate, makeSequence, setName, setURI, startFeature, startSequence
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Constructor Details
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FastaDescriptionLineParser
Deprecated.
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Method Details
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addSequenceProperty
Deprecated.Description copied from interface:SeqIOListener
Notify the listener of a sequence-wide property. This might be stored as an entry in the sequence's annotation bundle.- Specified by:
addSequenceProperty
in interfaceSeqIOListener
- Overrides:
addSequenceProperty
in classSequenceBuilderFilter
- Throws:
ParseException
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