Uses of Interface
org.biojava.bio.seq.GappedSequence
Packages that use GappedSequence
Package
Description
Classes to generate and describe sequence alignments.
Classes and interfaces for defining biological sequences and informatics
objects.
Standard in-memory implementations of
Sequence
and
Feature
.-
Uses of GappedSequence in org.biojava.bio.alignment
Methods in org.biojava.bio.alignment that return GappedSequenceModifier and TypeMethodDescriptionAlignmentPair.getQuery()
Return the query sequence as a gapped sequence.AlignmentPair.getSubject()
Return the subject sequence as a gapped sequence. -
Uses of GappedSequence in org.biojava.bio.seq
Methods in org.biojava.bio.seq that return GappedSequenceModifier and TypeMethodDescriptionstatic GappedSequence
DNATools.createGappedDNASequence
(String dna, String name) Get a new dna as a GappedSequencestatic GappedSequence
ProteinTools.createGappedProteinSequence
(String theProtein, String name) Get a new protein as a GappedSequencestatic GappedSequence
SequenceTools.gappedView
(Sequence seq) Create a new gapped sequence for a sequence. -
Uses of GappedSequence in org.biojava.bio.seq.impl
Classes in org.biojava.bio.seq.impl that implement GappedSequenceModifier and TypeClassDescriptionclass
Simple implementation of GappedSequence.Constructors in org.biojava.bio.seq.impl with parameters of type GappedSequence