Uses of Package
org.biojavax
Packages that use org.biojavax
Package
Description
The Biojava extensions packages, classes that extend the core biojava
functionality
Classes to represent biological entities and their relationships.
Interface between biojava and biosql databases
Interfaces to NCBI data.
Rich implementations of Sequences, Locations and Features.
Classes to support the I/O of RichSequence and
Bioentry objects.
Extensions to the biojava ontology model that represent BioSQL ontology.
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Classes in org.biojavax used by org.biojavaxClassDescriptionA simple ranked comment designed to be used for BioEntry comments in BioSQL.Represents a cross reference to another database.An exception that indicates that an attempt to resolve a
CrossRef
has failed.This interface returns symbols or sequence for a given cross-reference.Represents a documentary reference.Represents an author of a documentary reference.The namespace of an entry in a database schema.Note is a generic class intended to hold a term describing the note, a value to associate with that term, and a rank.Allows cross-references to other databases to be ranked.Represents a documentary reference.Annotatable objects that can have rich annotations.An annotation collection which stores annotations as Note objects.This interface allows a class to generate Rich objects based on a class name and some parameters. -
Classes in org.biojavax used by org.biojavax.bioClassDescriptionA simple ranked comment designed to be used for BioEntry comments in BioSQL.The namespace of an entry in a database schema.Note is a generic class intended to hold a term describing the note, a value to associate with that term, and a rank.Allows cross-references to other databases to be ranked.Defines an object as being able to have ranked cross references associated with it.Represents a documentary reference.Annotatable objects that can have rich annotations.An annotation collection which stores annotations as Note objects.
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Classes in org.biojavax used by org.biojavax.bio.db.biosqlClassDescriptionRepresents a cross reference to another database.This interface returns symbols or sequence for a given cross-reference.Note is a generic class intended to hold a term describing the note, a value to associate with that term, and a rank.This interface allows a class to generate Rich objects based on a class name and some parameters.
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Classes in org.biojavax used by org.biojavax.bio.db.ncbi
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Classes in org.biojavax used by org.biojavax.bio.seqClassDescriptionRepresents a cross reference to another database.This interface returns symbols or sequence for a given cross-reference.The namespace of an entry in a database schema.Allows cross-references to other databases to be ranked.Defines an object as being able to have ranked cross references associated with it.Annotatable objects that can have rich annotations.An annotation collection which stores annotations as Note objects.
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Classes in org.biojavax used by org.biojavax.bio.seq.ioClassDescriptionA simple ranked comment designed to be used for BioEntry comments in BioSQL.The namespace of an entry in a database schema.Allows cross-references to other databases to be ranked.Represents a documentary reference.
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Classes in org.biojavax used by org.biojavax.ontologyClassDescriptionAllows cross-references to other databases to be ranked.Defines an object as being able to have ranked cross references associated with it.