Package org.biojava.utils.io
package org.biojava.utils.io
I/O utility classes.
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ClassDescriptionA wrapper around
InputStream
that provides in-memory caching of the input data.Provides a cache for storing multiple small files in memory.A class that provides an InputStream from a File.Wrapper arround MappedByteBuffers to allow long-indexed access to files larger than 2 gigs.RandomAccessReader
extendsReader
to provide a means to create bufferedReader
s fromRandomAccessFile
s.This interface provides a collective name for IO classes that implement a seek function (e.g.,RandomAccessFile
).A in memory cache using soft references.This class decompresses an input stream containing data compressed with the unix "compress" utility (LZC, a LZW variant).