Uses of Interface
org.biojavax.bio.taxa.NCBITaxon
Packages that use NCBITaxon
Package
Description
Classes to represent biological entities and their relationships.
Classes to support the I/O of RichSequence and
Bioentry objects.
Objects that model the NCBI taxonomy schema as described in the BioSQL
schema.
-
Uses of NCBITaxon in org.biojavax.bio
Methods in org.biojavax.bio that return NCBITaxonModifier and TypeMethodDescriptionBioEntry.getTaxon()
Gets the taxon associated with this bioentry.SimpleBioEntry.getTaxon()
Gets the taxon associated with this bioentry.Methods in org.biojavax.bio with parameters of type NCBITaxon -
Uses of NCBITaxon in org.biojavax.bio.seq.io
Methods in org.biojavax.bio.seq.io with parameters of type NCBITaxonModifier and TypeMethodDescriptionvoid
void
void
Call back method so the event emitter can tell the listener the Taxon of the record being read.void
Call back method so the event emitter can tell the listener the Taxon of the record being read. -
Uses of NCBITaxon in org.biojavax.bio.taxa
Classes in org.biojavax.bio.taxa that implement NCBITaxon -
Uses of NCBITaxon in org.biojavax.bio.taxa.io
Methods in org.biojavax.bio.taxa.io that return NCBITaxonModifier and TypeMethodDescriptionprotected NCBITaxon
NCBITaxonomyLoader.readName
(BufferedReader names) Reads the next entry from the names.dmp file and returns the corresponding NCBITaxon object with the name added in already.SimpleNCBITaxonomyLoader.readName
(BufferedReader names) Reads the next entry from the names.dmp file and returns the corresponding NCBITaxon object with the name added in already.NCBITaxonomyLoader.readNode
(BufferedReader nodes) Reads the next entry from the nodes.dmp file and returns the corresponding NCBITaxon object.SimpleNCBITaxonomyLoader.readNode
(BufferedReader nodes) Reads the next entry from the nodes.dmp file and returns the corresponding NCBITaxon object.