Uses of Interface
org.biojava.bio.program.gff.GFFRecordFilter
Packages that use GFFRecordFilter
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Uses of GFFRecordFilter in org.biojava.bio.program.gff
Classes in org.biojava.bio.program.gff that implement GFFRecordFilterModifier and TypeClassDescriptionstatic class
Implementation of GFFRecordFilter that accepts everything.static class
Implementation of GFFRecordFilter that accepts records based upon the feature field.static class
static class
static class
Implementation of GFFRecordFilter that accepts records based upon the sequence name.static class
Implementation of GFFRecordFilter that accepts records based upon the source field.static class
Fields in org.biojava.bio.program.gff declared as GFFRecordFilterModifier and TypeFieldDescriptionstatic final GFFRecordFilter
GFFRecordFilter.ACCEPT_ALL
A GFFRecordFilter that accepts everything.Methods in org.biojava.bio.program.gff that return GFFRecordFilterMethods in org.biojava.bio.program.gff with parameters of type GFFRecordFilterModifier and TypeMethodDescriptionGFFEntrySet.filter
(GFFRecordFilter filter) Filter this entry set into another set.static GFFEntrySet
GFFTools.readGFF
(BufferedReader gffIn, GFFRecordFilter recFilt) Read all GFF entries matching a filter from a buffered reader.static GFFEntrySet
GFFTools.readGFF
(File inFile, GFFRecordFilter recFilt) Reads a GFFEntrySet from a file with the specified filter.static GFFEntrySet
GFFTools.readGFF
(String fileName, GFFRecordFilter recFilt) Deprecated.use: readGff(File,GFFRecordFilter)void
GFFRecordFilter.NotFilter.setFilter
(GFFRecordFilter filter) Constructors in org.biojava.bio.program.gff with parameters of type GFFRecordFilterModifierConstructorDescriptionGFFFilterer
(GFFDocumentHandler handler, GFFRecordFilter filter) Create a new GFFFilterer that will forward to handler everything that filter accepts.NotFilter
(GFFRecordFilter filter)