Uses of Class
org.biojava.utils.ParseErrorEvent
Packages that use ParseErrorEvent
Package
Description
Parser for Phred output
Classes and interfaces for processing and producing flat-file representations
of sequences.
Miscellaneous utility classes used by other BioJava components.
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Uses of ParseErrorEvent in org.biojava.bio.program.phred
Methods in org.biojava.bio.program.phred with parameters of type ParseErrorEventModifier and TypeMethodDescriptionvoid
PhredFormat.BadLineParsed
(ParseErrorEvent theEvent) This method determines the behaviour when a bad line is processed.protected void
PhredFormat.notifyParseErrorEvent
(ParseErrorEvent theEvent) Passes the event on to all the listeners registered for ParseErrorEvents. -
Uses of ParseErrorEvent in org.biojava.bio.seq.io
Methods in org.biojava.bio.seq.io with parameters of type ParseErrorEventModifier and TypeMethodDescriptionvoid
EmblLikeFormat.BadLineParsed
(ParseErrorEvent theEvent) Deprecated.This method determines the behaviour when a bad line is processed.void
FastaFormat.BadLineParsed
(ParseErrorEvent theEvent) Deprecated.This method determines the behaviour when a bad line is processed.void
GenbankFormat.BadLineParsed
(ParseErrorEvent theEvent) Deprecated.This method determines the behaviour when a bad line is processed.void
StreamReader.BadLineParsed
(ParseErrorEvent theEvent) This method determines the behaviour when a bad line is processed.protected void
EmblLikeFormat.notifyParseErrorEvent
(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents.protected void
EmblProcessor.notifyParseErrorEvent
(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents.protected void
FastaFormat.notifyParseErrorEvent
(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents.protected void
GenbankFormat.notifyParseErrorEvent
(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents.protected void
GenbankProcessor.notifyParseErrorEvent
(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents.protected void
SwissprotProcessor.notifyParseErrorEvent
(ParseErrorEvent theEvent) Deprecated.Passes the event on to all the listeners registered for ParseErrorEvents. -
Uses of ParseErrorEvent in org.biojava.utils
Methods in org.biojava.utils with parameters of type ParseErrorEventModifier and TypeMethodDescriptionvoid
ParseErrorListener.BadLineParsed
(ParseErrorEvent theEvent) Method called when the parser encounters a bad line.