Package org.biojava.bio.program.ssbind
Class SeqSimilarityStAXAdapter
java.lang.Object
org.biojava.utils.stax.StAXContentHandlerBase
org.biojava.bio.program.ssbind.SeqSimilarityStAXAdapter
- All Implemented Interfaces:
StAXContentHandler
SeqSimilarityStAXAdapter
is a handler for XML
conforming to the BioJava BlastLike DTD. Together with its modular
delegate handlers it converts XML into calls on a
SearchContentHandler
interface. Implementations of the
at interface create various types of Java object from the XML data.- Since:
- 1.3
- Author:
- Keith James
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Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
endElement
(String nsURI, String localName, String qName, StAXContentHandler handler) getSearchContentHandler
gets the handler which will receive the method calls generated by the adapter.void
setSearchContentHandler
(SearchContentHandler scHandler) setSearchContentHandler
sets the handler which will recieve the method calls generated by the adapter.void
startElement
(String nsURI, String localName, String qName, Attributes attrs, DelegationManager dm) Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
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Field Details
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NAMESPACE
- See Also:
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Constructor Details
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SeqSimilarityStAXAdapter
public SeqSimilarityStAXAdapter()
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Method Details
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startElement
public void startElement(String nsURI, String localName, String qName, Attributes attrs, DelegationManager dm) throws SAXException - Specified by:
startElement
in interfaceStAXContentHandler
- Overrides:
startElement
in classStAXContentHandlerBase
- Throws:
SAXException
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endElement
public void endElement(String nsURI, String localName, String qName, StAXContentHandler handler) throws SAXException - Specified by:
endElement
in interfaceStAXContentHandler
- Overrides:
endElement
in classStAXContentHandlerBase
- Throws:
SAXException
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getSearchContentHandler
getSearchContentHandler
gets the handler which will receive the method calls generated by the adapter.- Returns:
- a
SearchContentHandler
.
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setSearchContentHandler
setSearchContentHandler
sets the handler which will recieve the method calls generated by the adapter.- Parameters:
scHandler
- aSearchContentHandler
.
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