Class AlignmentPair

All Implemented Interfaces:
Serializable, Alignment, SymbolList, Changeable

public class AlignmentPair extends SimpleAlignment
This class stores the result of an alignment procedure that creates a pairwise alignment of two sequences. Currently, these sequences must have the identical length (this may be changed in the future). A format routine produces a BLAST-like output for the sequences but all necessary information to visualize the alignment are contained in this class.
Author:
Andreas Dräger
See Also: