Uses of Package
org.biojava.directory
Packages that use org.biojava.directory
Package
Description
Client for the OBDA BioFetch protocol.
General purpose Sequence storage in a relational database.
Support for OBDA flatfile databases.
Open Bio Sequence Database Access (OBDA) registry support.
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Classes in org.biojava.directory used by org.biojava.bio.seq.db.biofetchClassDescriptionA
RegistryException
thrown when the registry cannot find an implementation of a requestedSequenceDB
.Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard. -
Classes in org.biojava.directory used by org.biojava.bio.seq.db.biosqlClassDescriptionA
RegistryException
thrown when the registry cannot find an implementation of a requestedSequenceDB
.Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard. -
Classes in org.biojava.directory used by org.biojava.bio.seq.db.flatClassDescriptionA
RegistryException
thrown when the registry cannot find an implementation of a requestedSequenceDB
.Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard. -
Classes in org.biojava.directory used by org.biojava.directoryClassDescription
Registry
is a factory which gets implementations of the BioJavaSequenceDBLite
interface.The BioDirectory Registry is a simple system for specifying where to find services which provide sequence databases.ARegistryException
thrown when the registry cannot find an implementation of a requestedSequenceDB
.