Interface OrthoPair

All Known Implementing Classes:
SimpleOrthoPair

public interface OrthoPair
Each HomologeneEntry represents a single Homologene record that relates two presumptive orthologues.
  • Method Details

    • getFirstOrthologue

      gets the first orthologue in the orthology relationship.

      I agree that this access route is somewhat sucky for a symmetric relationship but I'd hate returning a Set of orthologues more and all the fiddling would require.

    • getSecondOrthologue

      gets the first orthologue in the orthology relationship. This will be the one with the lower TaxonID.
    • getSimilarity

      gets the second orthologue in the orthology relationship. This will be the one with the higher TaxonID.
    • getPercentIdentity

      get percentage identity.
    • getRef

      get reference to evidence for orthology.