Package org.biojava.directory
package org.biojava.directory
Open Bio Sequence Database Access (OBDA) registry support.
-
ClassDescriptionThis class encapsulates all the parsing of the OBDA registry configuration file.
ProviderNotFoundException
is thrown when a sequence database provider can not be located.Registry
is a factory which gets implementations of the BioJavaSequenceDBLite
interface.The BioDirectory Registry is a simple system for specifying where to find services which provide sequence databases.A RegistryConfiguration that allows you to treat other configurations as providing important or default configuration information.A simple implementation of RegistryConfiguration backed by a Map.ARegistryException
thrown when the registry cannot find an implementation of a requestedSequenceDB
.Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.A registry that loads up the standard biodirectory files.