Package org.biojavax.bio.db.biosql
package org.biojavax.bio.db.biosql
Interface between biojava and biosql databases
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ClassDescriptionThe class that accepts all features.The class that accepts no features.A simple implementation of CrossReferenceResolverA filter for accepting or rejecting a feature.A filter that returns all features accepted by both child filter.Construct one of these to filter features by display name.A filter that returns all features that have the given note, and the value and rank is checked as well.A filter that returns all features that have a note with the given term.Construct one of these to filter features by rank.Accept features that reside on a sequence with a particular name.Construct one of these to filter features by source.Construct one of these to filter features by source (name only - parent ontology is ignored).A filter that returns all features having locations on a given strand.Construct one of these to filter features by type.Construct one of these to filter features by type (name only - parent ontology is ignored).A filter that returns all features contained within a location.A filter for Hibernate-BioSQL filters to extend.A filter that returns all features not accepted by a child filter.A filter that returns all features accepted by at least one child filter.A filter that returns all features overlapping a location.A class representing some useful stuff you can do with BioSQLFeatureFilters, for instance converting plain FeatureFilters into a their BioSQLFeatureFilter equivalents (where possible).Takes requests for RichObjects and sees if it can load them from a Hibernate database.A handler which loads sequence data from a BioSQL database, caching it where possible.