Class GenbankLocationParser

java.lang.Object
org.biojavax.bio.seq.io.GenbankLocationParser

public class GenbankLocationParser extends Object
Parses Genbank location strings into RichLocation objects.
Since:
1.5
Author:
Richard Holland
  • Method Details

    • parseLocation

      public static RichLocation parseLocation(Namespace featureNS, String featureAccession, String locationString) throws ParseException
      Parses a location.
      Parameters:
      featureNS - the namespace of the feature this location lives on.
      featureAccession - the accession of the sequence of the feature this location lives on.
      locationString - the GenBank location string.
      Returns:
      RichLocation the equivalent RichLocation object.
      Throws:
      ParseException - if the parsing failed.
    • writeLocation

      public static String writeLocation(RichLocation l)
      Writes a location in Genbank format.
      Parameters:
      l - the location to write
      Returns:
      the formatted string representing the location.