Uses of Interface
org.biojava.bio.seq.projection.ProjectionContext
Packages that use ProjectionContext
Package
Description
Standard in-memory implementations of
Sequence
and
Feature
.Code for projecting Feature objects and systematically altering their
properties.
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Uses of ProjectionContext in org.biojava.bio.seq.impl
Classes in org.biojava.bio.seq.impl that implement ProjectionContextModifier and TypeClassDescriptionclass
static class
TargetContext that implements the mapping between the parent sequence and this sub-sequence. -
Uses of ProjectionContext in org.biojava.bio.seq.projection
Classes in org.biojava.bio.seq.projection that implement ProjectionContextModifier and TypeClassDescriptionclass
A good base class to implement ProjectionContext from.class
A ProjectionContext that translates and optionaly flips features.Methods in org.biojava.bio.seq.projection that return ProjectionContextModifier and TypeMethodDescriptionProjectedFeatureHolder.getContext()
ProjectedFeature.getProjectionContext()
Projection.getProjectionContext()
Methods in org.biojava.bio.seq.projection with parameters of type ProjectionContextModifier and TypeMethodDescriptionProjectionEngine.projectFeature
(Feature f, ProjectionContext ctx) Return a projection of Featuref
into the system defined by a given ProjectionContext.ProjectionEngine.revertTemplate
(Feature.Template templ, ProjectionContext ctxt) Revert a template so that it can be used on the original feature-space.ProjectionEngine.TemplateProjector.revertTemplate
(ProjectionContext ctxt, Feature.Template projTempl) Constructors in org.biojava.bio.seq.projection with parameters of type ProjectionContextModifierConstructorDescriptionProjectedFeature
(Feature f, ProjectionContext ctx) ProjectedFeatureHolder
(ProjectionContext context)