Package org.biojava.bio.program.ssaha
Class SearchListener.FilterByLength
java.lang.Object
org.biojava.bio.program.ssaha.SearchListener.Wrapper
org.biojava.bio.program.ssaha.SearchListener.FilterByLength
- All Implemented Interfaces:
SearchListener
- Enclosing interface:
SearchListener
A simple listener that filters out all hits that are too short.
- Since:
- 1.4
- Author:
- Matthew Pocock
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Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.bio.program.ssaha.SearchListener
SearchListener.Echo, SearchListener.FilterByLength, SearchListener.Tee, SearchListener.Wrapper
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
hit
(int hitID, int queryOffset, int hitOffset, int hitLength) There has been a hit between the query sequence and a database sequence.Methods inherited from class org.biojava.bio.program.ssaha.SearchListener.Wrapper
endSearch, startSearch
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Constructor Details
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FilterByLength
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Method Details
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hit
Description copied from interface:SearchListener
There has been a hit between the query sequence and a database sequence.- Specified by:
hit
in interfaceSearchListener
- Overrides:
hit
in classSearchListener.Wrapper
- Parameters:
hitID
- the number of the sequence hit; resolvable by String id = DataStore.seqNameForID(hitID)queryOffset
- the offset into the query sequencehitOffset
- the offset into the sequence hit in the databasehitLength
- the number of symbols hit
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