Uses of Interface
org.biojava.bio.program.tagvalue.TagValueListener
Packages that use TagValueListener
Package
Description
Databases of generic structured data (annotation) objects.
Experimental parsers using the tagvalue framework.
Process files as streams of records, each with tags with values.
Objects for representing Unigene clusters.
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Uses of TagValueListener in org.biojava.bio.annodb
Methods in org.biojava.bio.annodb with parameters of type TagValueListenerModifier and TypeMethodDescriptionIndexedAnnotationDB.ParserListenerFactory.getParserListener
(TagValueListener listener) Get the ParserListener for a TagValueListener.IndexedAnnotationDB.StaticMethodRPFactory.getParserListener
(TagValueListener tvl) -
Uses of TagValueListener in org.biojava.bio.program.formats
Methods in org.biojava.bio.program.formats with parameters of type TagValueListenerModifier and TypeMethodDescriptionEmbl.getParserListener
(TagValueListener listener) Enzyme.getParserListener
(TagValueListener listener) Format.getParserListener
(TagValueListener listener) Retrieve a ParserListener pair for the format that will pass all events on to a listener.Ligand.Compound.getParserListener
(TagValueListener listener) Ligand.Enzyme.getParserListener
(TagValueListener listener) Ligand.Reaction.getParserListener
(TagValueListener listener) Swissprot.getParserListener
(TagValueListener listener) -
Uses of TagValueListener in org.biojava.bio.program.tagvalue
Subinterfaces of TagValueListener in org.biojava.bio.program.tagvalueModifier and TypeInterfaceDescriptioninterface
Interface for TagValueListeners that wrap other TagValueListenersClasses in org.biojava.bio.program.tagvalue that implement TagValueListenerModifier and TypeClassDescriptionclass
An abstract TagValueWrapper that does nothing!class
Joins multipel values into single values.class
Builds an Annotation tree from TagValue events using an AnnotationType to work out which fields are of what type.class
A simple listener that just echoes events back to the console.class
Listens to tag-value events and passes on indexing events to an IndexStore.class
Listens to tag-value events and passes on indexing events to an IndexStore.class
Partician multiple values for a tag into their own tag groups.class
class
Helper class to wrap one TagValueListener inside another one.class
This class implements a state machine for parsing events from the Parser class.class
a basic listener for a State.class
Pushes a new parser and listener, or delegate to a listener depending on the tag.class
Silently drop all tags except those specified, and pass the rest onto a delegate.class
Rename tags using a TagMapper.class
Intercept the values associated with some tags and change them systematically.Fields in org.biojava.bio.program.tagvalue declared as TagValueListenerMethods in org.biojava.bio.program.tagvalue that return TagValueListenerModifier and TypeMethodDescriptionAbstractWrapper.getDelegate()
SimpleTagValueWrapper.getDelegate()
StateMachine.getDelegate()
TagValueWrapper.getDelegate()
get listener to which all calls will be delegatedParserListener.getListener()
getListener
returns the listener of the pair.StateMachine.BasicState.getListener()
return the TagValueListener assigned to this State.StateMachine.State.getListener()
TagDelegator.getListener
(Object tag) Methods in org.biojava.bio.program.tagvalue with parameters of type TagValueListenerModifier and TypeMethodDescriptionstatic final ParserListener
Formats.createEmblParserListener
(TagValueListener listener) static final ParserListener
Formats.createSwissprotParserListener
(TagValueListener listener) void
TagValueContext.pushParser
(TagValueParser subParser, TagValueListener subListener) Push a parser and listener pair onto the parser stack.boolean
Parser.read
(BufferedReader reader, TagValueParser parser, TagValueListener listener) void
AbstractWrapper.setDelegate
(TagValueListener delegate) void
SimpleTagValueWrapper.setDelegate
(TagValueListener delegate) void
StateMachine.setDelegate
(TagValueListener delegate) TagValueWrapper interfacevoid
TagValueWrapper.setDelegate
(TagValueListener delegate) set listener to which all calls will be delegatedvoid
StateMachine.BasicState.setListener
(TagValueListener listener) set a TagValueListener for this State.void
TagDelegator.setListener
(Object tag, TagValueListener listener) void
TagDelegator.setParserListener
(Object tag, TagValueParser parser, TagValueListener listener) Constructors in org.biojava.bio.program.tagvalue with parameters of type TagValueListenerModifierConstructorDescriptionAggregator
(TagValueListener listener, BoundaryFinder observer, String joiner) BasicState
(String label, TagValueListener listener) when this constructor is used, a fixed listener is used with this state.MultiTagger
(TagValueListener listener, BoundaryFinder observer) ParserListener
(TagValueParser parser, TagValueListener listener) Creates a newParserListener
instance.RegexFieldFinder
(TagValueListener delegate, Pattern pattern, String[] tags, boolean inLine) Creates a new RegexFiledFinder.SimpleTagValueWrapper
(TagValueListener delegate) Build a SimpleTagValueWrapper that will forward everything to a delegate.TagDelegator
(TagValueListener delegate) Create a new TagDropper that will pass on all retained tags and values to tvl.TagRenamer
(TagValueListener delegate, PropertyChanger mapper) Build a new TagRenamer with a delegate and mapper.ValueChanger
(TagValueListener delegate) ValueChanger
(TagValueListener delegate, ChangeTable changeTable) Create a new changer that will pass the modified event stream to a delegate. -
Uses of TagValueListener in org.biojava.bio.program.unigene
Methods in org.biojava.bio.program.unigene with parameters of type TagValueListenerModifier and TypeMethodDescriptionstatic ParserListener
UnigeneTools.buildDataParser
(TagValueListener listener) Generate a tag-value parser for unigene data files that will pass all parsing events on to your listener.static ParserListener
UnigeneTools.buildLibInfoParser
(TagValueListener listener) Generate a tag-value parser for the library info unigene files.