Uses of Interface
org.biojava.bio.gui.sequence.FeatureRenderer
Packages that use FeatureRenderer
Package
Description
Graphical displays of biological sequences and associated annotations.
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Uses of FeatureRenderer in org.biojava.bio.gui.sequence
Subinterfaces of FeatureRenderer in org.biojava.bio.gui.sequenceModifier and TypeInterfaceDescriptioninterface
BeadFeatureRenderer
s use a 'string of beads' metaphor for displaying features.interface
ImageMapRenderer
s create strings representingFeature
s suitable for use in HTML image maps.Classes in org.biojava.bio.gui.sequence that implement FeatureRendererModifier and TypeClassDescriptionclass
AbstractBeadRenderer
is a an abstract base class for the creation ofFeatureRenderer
s which use a 'string of beads' metaphor for displaying features.class
A Feature Renderer that paints the Feature as a right facing arrow Based heavily on BasicFeatureRendererclass
class
BasicImapRenderer
is a decorator forBasicFeatureRenderer
which adds the ability to create HTML image map coordinates which correspond to the feature rendering produced by theBasicFeatureRenderer
.class
EllipticalBeadRenderer
renders features as simple ellipses.class
class
A FeatureRenderer that renders a particular Glyph for Features accepted by a particular FeatureFilterclass
RectangularBeadRenderer
renders features as simple rectangles.class
RectangularImapRenderer
is a decorator forRectangularBeadRenderer
which adds the ability to create HTML image map coordinates which correspond to the feature rendering produced by theRectangularBeadRenderer
.class
RoundRectangularBeadRenderer
renders features as rectangles with rounded corners.class
A GlyphRenderer subclass that specificatlly handles Features pertaining to Secondary Structure (Helices, Turns and Strands).class
A feature renderer that computes the data necessary to render multi-exon transcripts without CDS data.class
Allows you to stack multiple feature renderers up (for example a label renderer and a beaded renderer) and have them treated as a single renderer for layout.class
class
A feature renderer that draws non-contiguous features as a set of boxes joined by zig-zags.class
ZiggyImapRenderer
is a decorator forZiggyFeatureRenderer
which adds the ability to create HTML image map coordinates which correspond to the feature rendering produced by theZiggyFeatureRenderer
.Methods in org.biojava.bio.gui.sequence that return FeatureRendererModifier and TypeMethodDescriptionabstract FeatureRenderer
AbstractPeptideDigestRenderer.createRenderer
(int lane) PeptideDigestRenderer.createRenderer
(int lane) FeatureBlockSequenceRenderer.getFeatureRenderer()
getFeatureRenderer
returns the currently active renderer.Methods in org.biojava.bio.gui.sequence with parameters of type FeatureRendererModifier and TypeMethodDescriptionvoid
StackedFeatureRenderer.addRenderer
(FeatureRenderer renderer) void
StackedFeatureRenderer.removeRenderer
(FeatureRenderer renderer) void
FeatureBlockSequenceRenderer.setFeatureRenderer
(FeatureRenderer renderer) setFeatureRenderer
sets the renderer to be used.Constructors in org.biojava.bio.gui.sequence with parameters of type FeatureRendererModifierConstructorDescriptionCreates a newFeatureBlockSequenceRenderer
which uses the specifiedFeatureRenderer
.