Uses of Class
org.biojava.bio.proteomics.Protease
Packages that use Protease
Package
Description
Utilities to aid in performing various physical analysis of proteins.
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Uses of Protease in org.biojava.bio.proteomics
Methods in org.biojava.bio.proteomics that return ProteaseModifier and TypeMethodDescriptionstatic Protease
ProteaseManager.createProtease
(String cleaveRes, boolean endoProtease, String name) static Protease
ProteaseManager.createProtease
(String cleaveRes, boolean endoProtease, String notCleaveRes, String name) static Protease
ProteaseManager.createProtease
(SymbolList cleaveRes, boolean endoProtease, String name) static Protease
ProteaseManager.createProtease
(SymbolList cleaveRes, boolean endoProtease, SymbolList notCleaveRes, String name) Creates and registers a new Protease.static Protease
ProteaseManager.getArg_C()
static Protease
ProteaseManager.getAsp_N()
static Protease
ProteaseManager.getChymotrypsin()
static Protease
ProteaseManager.getCNBr()
static Protease
ProteaseManager.getGlu_C_bicarbonate()
static Protease
ProteaseManager.getGlu_C_phosphate()
static Protease
ProteaseManager.getLys_C()
static final Protease
Protease.getProteaseByName
(String proteaseName) Retrieves a reference to the named Protease.static Protease
ProteaseManager.getProteaseByName
(String proteaseName) Gets a Protease instance by name.static Protease
ProteaseManager.getTrypsin()
Methods in org.biojava.bio.proteomics with parameters of type ProteaseModifier and TypeMethodDescriptionstatic void
ProteaseManager.registerProtease
(Protease prot) Registers a protease and ensures its flyweight statusvoid
Digest.setProtease
(Protease protease)