Uses of Interface
org.biojavax.bio.db.RichSequenceDB
Packages that use RichSequenceDB
Package
Description
Interactions between biojavax objects and a DB.
Interface between biojava and biosql databases
Interfaces to NCBI data.
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Uses of RichSequenceDB in org.biojavax.bio.db
Classes in org.biojavax.bio.db that implement RichSequenceDBModifier and TypeClassDescriptionclass
An abstract implementation of RichSequenceDB that provides the getRichSequenceIterator method.class
An implementation of RichSequenceDB that uses an underlying HashMap to store the RichSequence objects.Methods in org.biojavax.bio.db that return RichSequenceDBModifier and TypeMethodDescriptionHashRichSequenceDB.getRichSequences
(Set ids) HashRichSequenceDB.getRichSequences
(Set ids, RichSequenceDB db) RichSequenceDBLite.getRichSequences
(Set ids) Retrieve multiple RichSequence by its id.RichSequenceDBLite.getRichSequences
(Set ids, RichSequenceDB db) Retrieve multiple RichSequence into a specific sequence database.Methods in org.biojavax.bio.db with parameters of type RichSequenceDBModifier and TypeMethodDescriptionHashRichSequenceDB.getRichSequences
(Set ids, RichSequenceDB db) RichSequenceDBLite.getRichSequences
(Set ids, RichSequenceDB db) Retrieve multiple RichSequence into a specific sequence database. -
Uses of RichSequenceDB in org.biojavax.bio.db.biosql
Classes in org.biojavax.bio.db.biosql that implement RichSequenceDBMethods in org.biojavax.bio.db.biosql that return RichSequenceDBModifier and TypeMethodDescriptionBioSQLRichSequenceDB.getRichSequences
(Set ids) BioSQLRichSequenceDB.getRichSequences
(Set ids, RichSequenceDB db) Methods in org.biojavax.bio.db.biosql with parameters of type RichSequenceDBModifier and TypeMethodDescriptionBioSQLRichSequenceDB.getRichSequences
(Set ids, RichSequenceDB db) -
Uses of RichSequenceDB in org.biojavax.bio.db.ncbi
Classes in org.biojavax.bio.db.ncbi that implement RichSequenceDBModifier and TypeClassDescriptionclass
This class contains functions accessing DNA sequences in Genbank format.class
This class contains functions accessing Peptide sequences in Genpept format.Methods in org.biojavax.bio.db.ncbi that return RichSequenceDBModifier and TypeMethodDescriptionGenbankRichSequenceDB.getRichSequences
(Set list) Retrieve rich sequences from a GenbankGenbankRichSequenceDB.getRichSequences
(Set list, RichSequenceDB database) Retrieve rich sequences from a GenbankGenpeptRichSequenceDB.getRichSequences
(Set list) Retrieve rich sequences from a GenbankGenpeptRichSequenceDB.getRichSequences
(Set list, RichSequenceDB database) Retrieve rich sequences from a GenbankMethods in org.biojavax.bio.db.ncbi with parameters of type RichSequenceDBModifier and TypeMethodDescriptionGenbankRichSequenceDB.getRichSequences
(Set list, RichSequenceDB database) Retrieve rich sequences from a GenbankGenpeptRichSequenceDB.getRichSequences
(Set list, RichSequenceDB database) Retrieve rich sequences from a Genbank