Uses of Class
org.biojava.directory.RegistryException
Packages that use RegistryException
Package
Description
Client for the OBDA BioFetch protocol.
General purpose Sequence storage in a relational database.
Support for OBDA flatfile databases.
Open Bio Sequence Database Access (OBDA) registry support.
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Uses of RegistryException in org.biojava.bio.seq.db.biofetch
Methods in org.biojava.bio.seq.db.biofetch that throw RegistryException -
Uses of RegistryException in org.biojava.bio.seq.db.biosql
Methods in org.biojava.bio.seq.db.biosql that throw RegistryException -
Uses of RegistryException in org.biojava.bio.seq.db.flat
Methods in org.biojava.bio.seq.db.flat that throw RegistryException -
Uses of RegistryException in org.biojava.directory
Subclasses of RegistryException in org.biojava.directoryModifier and TypeClassDescriptionclass
ProviderNotFoundException
is thrown when a sequence database provider can not be located.Methods in org.biojava.directory that throw RegistryExceptionModifier and TypeMethodDescriptionvoid
RegistryConfiguration.Composite.addBottomConfig
(RegistryConfiguration newConfig) Add a configuration as the most default place to look.void
RegistryConfiguration.Composite.addTopConfig
(RegistryConfiguration newConfig) Add a configuration as the most authoritative place to look.RegistryConfiguration.getConfiguration()
getConfiguration
returns a mapping of registry database names to collections of tag-value pairs.Registry.getDatabase
(String dbName) getDatabase
retrieves a database instance known by a nameString
.SequenceDBProvider.getSequenceDB
(Map config) Get a sequence database.static RegistryConfiguration
OBDARegistryParser.parseRegistry
(BufferedReader in, String locator) parseRegistry
parses an Open Bioinformatics Database Access (OBDA) configuration file.