Interface HomologeneBuilder
- All Known Implementing Classes:
SimpleHomologeneBuilder
public interface HomologeneBuilder
an interface for Homologene dataset Builders
- Author:
- David Huen
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Field Summary
Fields -
Method Summary
Modifier and TypeMethodDescriptionvoid
addOrthologueProperty
(String key, String value) add a property to the current Orthologuevoid
addOrthoPairProperty
(String key, String value) add a property to the current OrthoPairvoid
add title information to an Orthologue (this is not in enclosed in the Orthologue element because it comes completely separate in the Homologene data files.void
endDB()
end of data for DBvoid
endGroup()
end of data for groupvoid
end of data for this Orthologuevoid
end of data for this OrthoPairgetDB()
retrieve the DB that has just been builtvoid
startDB()
indicates start of data for a HomologeneDBvoid
indicates start of data for a OrthoPairSetvoid
indicates start of data for an orthologuevoid
indicates start of data for an OrthoPair
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Field Details
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TAXONID
- See Also:
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LOCUSID
- See Also:
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HOMOID
- See Also:
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ACCESSION
- See Also:
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SIMILARITYTYPE
- See Also:
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PERCENTIDENTITY
- See Also:
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REFERENCE
- See Also:
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TWIN
- See Also:
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MULTIPLE
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CURATED
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Method Details
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startDB
void startDB()indicates start of data for a HomologeneDB -
startGroup
void startGroup()indicates start of data for a OrthoPairSet -
startOrthoPair
void startOrthoPair()indicates start of data for an OrthoPair -
startOrthologue
void startOrthologue()indicates start of data for an orthologue -
addOrthologueProperty
add a property to the current Orthologue -
endOrthologue
void endOrthologue()end of data for this Orthologue -
addOrthoPairProperty
add a property to the current OrthoPair -
endOrthoPair
void endOrthoPair()end of data for this OrthoPair -
addTitle
add title information to an Orthologue (this is not in enclosed in the Orthologue element because it comes completely separate in the Homologene data files. Go figger.) -
endGroup
void endGroup()end of data for group -
endDB
void endDB()end of data for DB -
getDB
retrieve the DB that has just been built
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