Interface OrthoPair
- All Known Implementing Classes:
SimpleOrthoPair
public interface OrthoPair
Each HomologeneEntry represents a single
Homologene record that relates two
presumptive orthologues.
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Method Summary
Modifier and TypeMethodDescriptiongets the first orthologue in the orthology relationship.double
get percentage identity.getRef()
get reference to evidence for orthology.gets the first orthologue in the orthology relationship.gets the second orthologue in the orthology relationship.
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Method Details
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getFirstOrthologue
gets the first orthologue in the orthology relationship.I agree that this access route is somewhat sucky for a symmetric relationship but I'd hate returning a Set of orthologues more and all the fiddling would require.
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getSecondOrthologue
gets the first orthologue in the orthology relationship. This will be the one with the lower TaxonID. -
getSimilarity
gets the second orthologue in the orthology relationship. This will be the one with the higher TaxonID. -
getPercentIdentity
double getPercentIdentity()get percentage identity. -
getRef
get reference to evidence for orthology.
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