Package org.biojava.bio.seq.io.agave
Class AGAVECdsHandler
java.lang.Object
org.biojava.bio.seq.io.agave.StAXContentHandlerBase
org.biojava.bio.seq.io.agave.StAXFeatureHandler
org.biojava.bio.seq.io.agave.AGAVECdsHandler
- All Implemented Interfaces:
StAXContentHandler
Handles the AGAVE <cds> element
- Author:
- Hanning Ni Doubletwist Inc
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Field Summary
FieldsFields inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler
annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures
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Method Summary
Modifier and TypeMethodDescriptionvoid
startElementHandler
(String nsURI, String localName, String qName, Attributes attrs) Element-specific handler.Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler
addFeatureToSequence, addHandler, createTemplate, endElement, endElementHandler, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement
Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
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Field Details
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AGAVE_CDS_HANDLER_FACTORY
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Method Details
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startElementHandler
public void startElementHandler(String nsURI, String localName, String qName, Attributes attrs) throws SAXException Description copied from class:StAXFeatureHandler
Element-specific handler. Subclass this to do something useful!- Overrides:
startElementHandler
in classStAXFeatureHandler
- Throws:
SAXException
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