Uses of Interface
org.biojava.bio.seq.io.StreamParser
Packages that use StreamParser
Package
Description
Classes and interfaces for processing and producing flat-file representations
of sequences.
Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of StreamParser in org.biojava.bio.seq.io
Methods in org.biojava.bio.seq.io that return StreamParserModifier and TypeMethodDescriptionAlternateTokenization.parseStream
(SeqIOListener listener) Will throw an exception.CharacterTokenization.parseStream
(SeqIOListener listener) SymbolTokenization.parseStream
(SeqIOListener listener) Return an object which can parse an arbitrary character stream into symbols.WordTokenization.parseStream
(SeqIOListener siol) Methods in org.biojava.bio.seq.io with parameters of type StreamParserModifier and TypeMethodDescriptionprotected void
EmblLikeFormat.processSequenceLine
(String line, StreamParser parser) Deprecated.Dispatch symbol data from SQ-block line of an EMBL-like file. -
Uses of StreamParser in org.biojava.bio.seq.io.game
Methods in org.biojava.bio.seq.io.game with parameters of type StreamParserModifier and TypeMethodDescriptionvoid
SequenceContentHandlerBase.setStreamParser
(StreamParser parser) assign a StreamParser object to instance. -
Uses of StreamParser in org.biojava.bio.symbol
Methods in org.biojava.bio.symbol that return StreamParserModifier and TypeMethodDescriptionSoftMaskedAlphabet.CaseSensitiveTokenization.parseStream
(SeqIOListener l) The current implementation only supports character parsing.