Package org.biojava.bio.search
Interface BioPattern
- All Known Implementing Classes:
MaxMismatchPattern
,SeqContentPattern
public interface BioPattern
- Author:
- Matthew Pocock
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Method Summary
Modifier and TypeMethodDescriptionmatcher
(SymbolList symList) Get a matcher that will use these parameters to search a SymbolList.
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Method Details
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matcher
Get a matcher that will use these parameters to search a SymbolList.The resulting BioMatcher is independant of this BioPattern. In particular, calling any mutator methods on this pattern will not affect the matcher.
- Parameters:
symList
- the SymbolList to match against- Returns:
- a BioMatcher that will perform the search
- Throws:
IllegalAlphabetException
- if symList is not over the right alphabet
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