Package org.biojava.bio.program.xff
Class XFFTools
java.lang.Object
org.biojava.bio.program.xff.XFFTools
Common functionality for manipulating XFF.
- Author:
- Matthew Pocock
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Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic void
annotateXFF
(File xffFile, Sequence sequence) static void
annotateXFF
(File xffFile, Sequence sequence, Annotation ann) static Sequence
static Sequence
readXFF
(File xffFile, String seqID, FiniteAlphabet alpha) static void
writeXFF
(File xffFile, FeatureHolder features) static void
writeXFF
(PrintWriter xffPR, FeatureHolder features)
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Field Details
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XFF_NS
- See Also:
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XFF_BIOJAVA_NS
- See Also:
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Constructor Details
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XFFTools
public XFFTools()
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Method Details
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annotateXFF
public static void annotateXFF(File xffFile, Sequence sequence) throws IOException, SAXException, BioException - Throws:
IOException
SAXException
BioException
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annotateXFF
public static void annotateXFF(File xffFile, Sequence sequence, Annotation ann) throws IOException, SAXException, BioException - Throws:
IOException
SAXException
BioException
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readXFF
public static Sequence readXFF(File xffFile, String seqID, FiniteAlphabet alpha) throws IOException, SAXException, BioException - Throws:
IOException
SAXException
BioException
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readXFF
public static Sequence readXFF(File xffFile, String seqID) throws IOException, SAXException, BioException - Throws:
IOException
SAXException
BioException
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writeXFF
- Throws:
IOException
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writeXFF
- Throws:
IOException
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