Uses of Class
org.biojava.bio.alignment.AlignmentAlgorithm
Packages that use AlignmentAlgorithm
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Uses of AlignmentAlgorithm in org.biojava.bio.alignment
Subclasses of AlignmentAlgorithm in org.biojava.bio.alignmentModifier and TypeClassDescriptionclass
Needleman and Wunsch defined the problem of global sequence alignments, from the first till the last symbol of a sequence.class
Smith and Waterman developed an efficient dynamic programming algorithm to perform local sequence alignments, which returns the most conserved region of two sequences (longest common substring with modifications).Methods in org.biojava.bio.alignment with parameters of type AlignmentAlgorithmModifier and TypeMethodDescriptionstatic AlignmentPair
AlignmentPair.align
(Sequence query, Sequence subject, AlignmentAlgorithm algorithm)