Uses of Interface
org.biojavax.bio.BioEntryRelationship
Packages that use BioEntryRelationship
Package
Description
Classes to represent biological entities and their relationships.
Classes to support the I/O of RichSequence and
Bioentry objects.
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Uses of BioEntryRelationship in org.biojavax.bio
Classes in org.biojavax.bio that implement BioEntryRelationshipModifier and TypeClassDescriptionclass
Represents a relationship between two bioentries that is described by a term and given a rank.Methods in org.biojavax.bio that return types with arguments of type BioEntryRelationshipModifier and TypeMethodDescriptionBioEntry.getRelationships()
Returns a set of all relationships associated with this bioentry.SimpleBioEntry.getRelationships()
Returns a set of all relationships associated with this bioentry.Methods in org.biojavax.bio with parameters of type BioEntryRelationshipModifier and TypeMethodDescriptionvoid
BioEntry.addRelationship
(BioEntryRelationship relation) Adds a relation instance to this bioentry.void
SimpleBioEntry.addRelationship
(BioEntryRelationship relation) Adds a relation instance to this bioentry.void
BioEntry.removeRelationship
(BioEntryRelationship relation) Removes a relation instance from this bioentry.void
SimpleBioEntry.removeRelationship
(BioEntryRelationship relation) Removes a relation instance from this bioentry. -
Uses of BioEntryRelationship in org.biojavax.bio.seq.io
Methods in org.biojavax.bio.seq.io with parameters of type BioEntryRelationshipModifier and TypeMethodDescriptionvoid
DebuggingRichSeqIOListener.setRelationship
(BioEntryRelationship relationship) void
RichSeqIOAdapter.setRelationship
(BioEntryRelationship relationship) void
RichSeqIOListener.setRelationship
(BioEntryRelationship relationship) Call back method so the event emitter can tell the listener about a relationship between the bioentry or sequence in the record being read and another bioentry.void
SimpleRichSequenceBuilder.setRelationship
(BioEntryRelationship relationship) Call back method so the event emitter can tell the listener about a relationship between the bioentry or sequence in the record being read and another bioentry.