Package Hierarchies:
Class Hierarchy
- java.lang.Object
- org.biojava.utils.AbstractChangeable (implements org.biojava.utils.Changeable)
- org.biojava.bio.seq.io.AlignIOConstants
- org.biojava.bio.seq.io.ChunkedSymbolListFactory
- org.biojava.bio.seq.io.EmblFileFormer (implements org.biojava.bio.seq.io.SeqFileFormer)
- org.biojava.bio.seq.io.EmblLikeFormat (implements org.biojava.utils.ParseErrorListener, org.biojava.utils.ParseErrorSource, org.biojava.bio.seq.io.SequenceFormat, java.io.Serializable)
- org.biojava.bio.seq.io.EmblLikeLocationParser
- org.biojava.bio.seq.io.EmblProcessor.Factory (implements org.biojava.bio.seq.io.SequenceBuilderFactory, java.io.Serializable)
- org.biojava.bio.seq.io.EmblReferenceComparator (implements java.util.Comparator<T>)
- org.biojava.bio.seq.io.FastaAlignmentFormat (implements org.biojava.bio.seq.io.AlignmentFormat)
- org.biojava.bio.seq.io.FastaDescriptionLineParser.Factory (implements org.biojava.bio.seq.io.SequenceBuilderFactory, java.io.Serializable)
- org.biojava.bio.seq.io.FastaFormat (implements org.biojava.utils.ParseErrorListener, org.biojava.utils.ParseErrorSource, org.biojava.bio.seq.io.SequenceFormat, java.io.Serializable)
- org.biojava.bio.seq.io.FeatureTableParser
- org.biojava.bio.seq.io.GAMEFormat (implements org.biojava.bio.seq.io.SequenceFormat)
- org.biojava.bio.seq.io.GenbankFileFormer (implements org.biojava.bio.seq.io.SeqFileFormer)
- org.biojava.bio.seq.io.GenbankFormat (implements org.biojava.utils.ParseErrorListener, org.biojava.utils.ParseErrorSource, org.biojava.bio.seq.io.SequenceFormat, java.io.Serializable)
- org.biojava.bio.seq.io.GenbankProcessor.Factory (implements org.biojava.bio.seq.io.SequenceBuilderFactory, java.io.Serializable)
- org.biojava.bio.seq.io.GenEmblFeatureComparator (implements java.util.Comparator<T>)
- org.biojava.bio.seq.io.GenEmblPropertyComparator (implements java.util.Comparator<T>)
- org.biojava.bio.seq.io.MSFAlignmentFormat (implements org.biojava.bio.seq.io.AlignmentFormat)
- org.biojava.bio.seq.io.OrganismParser.Factory (implements org.biojava.bio.seq.io.SequenceBuilderFactory, java.io.Serializable)
- org.biojava.bio.seq.io.ProteinRefSeqProcessor.Factory (implements org.biojava.bio.seq.io.SequenceBuilderFactory, java.io.Serializable)
- org.biojava.bio.seq.io.SeqIOAdapter (implements org.biojava.bio.seq.io.SeqIOListener)
- org.biojava.bio.seq.io.SeqIOConstants
- org.biojava.bio.seq.io.SeqIOEventEmitter
- org.biojava.bio.seq.io.SeqIOFilter (implements org.biojava.bio.seq.io.SeqIOListener)
- org.biojava.bio.seq.io.SeqIOTools
- org.biojava.bio.seq.io.SequenceBuilderBase (implements org.biojava.bio.seq.io.SequenceBuilder)
- org.biojava.bio.seq.io.SequenceBuilderFilter (implements org.biojava.bio.seq.io.SequenceBuilder)
- org.biojava.bio.seq.io.StreamReader (implements org.biojava.utils.ParseErrorListener, org.biojava.bio.seq.SequenceIterator)
- org.biojava.bio.seq.io.StreamWriter
- org.biojava.bio.seq.io.SwissprotFileFormer (implements org.biojava.bio.seq.io.SeqFileFormer)
- org.biojava.bio.seq.io.SwissprotProcessor.Factory (implements org.biojava.bio.seq.io.SequenceBuilderFactory, java.io.Serializable)
- org.biojava.bio.seq.io.SymbolListCharSequence (implements java.lang.CharSequence)
- org.biojava.bio.seq.io.SymbolTokenization.TokenType
- java.lang.Throwable (implements java.io.Serializable)
- org.biojava.utils.Unchangeable (implements org.biojava.utils.Changeable)