Uses of Interface
org.biojava.bio.program.homologene.OrthoPair
Packages that use OrthoPair
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Uses of OrthoPair in org.biojava.bio.program.homologene
Classes in org.biojava.bio.program.homologene that implement OrthoPairModifier and TypeClassDescriptionclass
A no-frills implementation of the OrthoPair interfaceMethods in org.biojava.bio.program.homologene that return OrthoPairModifier and TypeMethodDescriptionHomologeneDB.createOrthoPair
(Orthologue first, Orthologue second, String ref) Create a curated orthology entry.HomologeneDB.createOrthoPair
(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity) Create a computed orthology entry.SimpleHomologeneDB.createOrthoPair
(Orthologue first, Orthologue second, String ref) SimpleHomologeneDB.createOrthoPair
(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity) OrthoPairSet.Iterator.nextOrthoPair()
SimpleOrthoPairSet.Iterator.nextOrthoPair()
Methods in org.biojava.bio.program.homologene with parameters of type OrthoPairModifier and TypeMethodDescriptionboolean
boolean
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void
OrthoPairSet.addOrthoPair
(OrthoPair orthology) adds a specified OrthoPair relationship to this group.void
SimpleOrthoPairSet.addOrthoPair
(OrthoPair orthology) void
OrthoPairSet.removeOrthoPair
(OrthoPair orthology) removes a specified OrthoPair relationship from this group.void
SimpleOrthoPairSet.removeOrthoPair
(OrthoPair orthology)