Uses of Interface
org.biojava.bio.seq.io.agave.StAXHandlerFactory
Packages that use StAXHandlerFactory
Package
Description
Classes for converting between AGAVE XML and BioJava objects.
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Uses of StAXHandlerFactory in org.biojava.bio.seq.io.agave
Fields in org.biojava.bio.seq.io.agave declared as StAXHandlerFactoryModifier and TypeFieldDescriptionstatic final StAXHandlerFactory
AGAVEAltIdsPropHandler.AGAVE_ALT_IDS_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEAnnotationsHandler.AGAVE_ANNOTATIONS_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEAssemblyHandler.AGAVE_ASSEMBLY_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEBioSeqHandler.AGAVE_BIO_SEQ_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEBioSequenceHandler.AGAVE_BIO_SEQUENCE_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVECdsHandler.AGAVE_CDS_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEChromosomeHandler.AGAVE_CHROMOSOME_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEClassificationHandler.AGAVE_CLASSIFICATION_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVECompResultHandler.AGAVE_COMP_RESULT_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEComputationHandler.AGAVE_COMPUTATION_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEContigHandler.AGAVE_CONTIG_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEDbIdPropHandler.AGAVE_DBID_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEDescPropHandler.AGAVE_DESC_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEElementIdPropHandler.AGAVE_ELEMENT_ID_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEEvidenceHandler.AGAVE_EVIDENCE_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEExonsPropHandler.AGAVE_EXONS_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEFragmentOrderHandler.AGAVE_FRAGMENT_ORDER_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEFragmentOrientationHandler.AGAVE_FRAGMENT_ORIENTATION_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEGeneHandler.AGAVE_GENE_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEIdAliasPropHandler.AGAVE_ID_ALIAS_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEKeywordPropHandler.AGAVE_KEYWORD_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEMapLocationPropHandler.AGAVE_MAP_LOCATION_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEMapPositionPropHandler.AGAVE_MAP_POSITION_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEMatchAlignPropHandler.AGAVE_MATCH_ALIGN_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEMatchDescPropHandler.AGAVE_MATCH_DESC_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEMatchRegionPropHandler.AGAVE_MATCH_REGION_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEMrnaHandler.AGAVE_MRNA_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVENotePropHandler.AGAVE_NOTE_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEPredictedProteinHandler.AGAVE_PREDICTED_PROTEIN_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEQualifierPropHandler.AGAVE_QUALIFIER_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEQueryRegionPropHandler.AGAVE_QUERY_REGION_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVERelatedAnnotPropHandler.AGAVE_RELATED_ANNOT_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEResultGroupHandler.AGAVE_RESULT_GROUP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEResultPropertyPropHandler.AGAVE_RESULT_PROPERTY_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVESciPropertyPropHandler.AGAVE_SCI_PROPERTY_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVESeqFeatureHandler.AGAVE_SEQ_FEATURE_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVESeqLocationPropHandler.AGAVE_SEQ_LOCATION_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVESeqMapHandler.AGAVE_SEQ_MAP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVESeqPropHandler.AGAVE_SEQ_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVETranscriptHandler.AGAVE_TRANSCRIPT_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEUnorderedFragmentsHandler.AGAVE_UNORDERED_FRAGMENTS_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEViewPropHandler.AGAVE_VIEW_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEXrefPropHandler.AGAVE_XREF_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEXrefPropPropHandler.AGAVE_XREF_PROP_PROP_HANDLER_FACTORY
static final StAXHandlerFactory
AGAVEXrefsPropHandler.AGAVE_XREFS_PROP_HANDLER_FACTORY
Methods in org.biojava.bio.seq.io.agave with parameters of type StAXHandlerFactoryModifier and TypeMethodDescriptionprotected void
StAXFeatureHandler.addHandler
(ElementRecognizer rec, StAXHandlerFactory handler) protected void
StAXPropertyHandler.addHandler
(ElementRecognizer rec, StAXHandlerFactory handler)