Package org.biojava.bio.program.homologene
package org.biojava.bio.program.homologene
Support classes for Homologene data. A work-in-progress with rudimentary support.
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ClassDescriptionAn abstract implementation of the OrthoPairCollection interface.represents the Homologene Group.an interface for Homologene dataset BuildersHomologene is a NCBI dataset that curates sets of orthologues from the reference model organisms.Homologene is a NCBI dataset that curates sets of orthologues from the reference model ogranisms.this entry contains data about the orthologue.Interface for classes that store and manipulate orthologues.An iterator for the contents of an OrthologueSet.Each HomologeneEntry represents a single Homologene record that relates two presumptive orthologues.Interface for a Set of OrthoPairSetsIterator for a OrthoPairCollectionrepresents the Homologene Group.all OrthoPairs must meet the requirement defined by filter.at least one OrthoPair must meet the requirement defined by filter.Each HomologeneEntry represents a single Homologene record that relates two presumptive orthologues.A simple no-frills implementation of the HomologeneBuilder interface.this entry contains data about the orthologue.A no-frills implementation of the OrthoPair interfacea no-frills implementation of a Homologene Group