Uses of Class
org.biojava.bio.dp.DP
Packages that use DP
Package
Description
HMM and Dynamic Programming Algorithms.
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Uses of DP in org.biojava.bio.dp
Methods in org.biojava.bio.dp that return DPModifier and TypeMethodDescriptionDPFactory.createDP
(MarkovModel model) DPFactory.DefaultFactory.createDP
(MarkovModel model) AbstractTrainer.getDP()
TrainingAlgorithm.getDP()
Constructors in org.biojava.bio.dp with parameters of type DPModifierConstructorDescriptionAbstractTrainer
(DP dp) BaumWelchSampler
(DP dp) BaumWelchTrainer
(DP dp) -
Uses of DP in org.biojava.bio.dp.onehead
Subclasses of DP in org.biojava.bio.dp.oneheadModifier and TypeClassDescriptionclass
An implementation of DP that aligns a single sequence against a single model.Constructors in org.biojava.bio.dp.onehead with parameters of type DP -
Uses of DP in org.biojava.bio.dp.twohead
Subclasses of DP in org.biojava.bio.dp.twoheadModifier and TypeClassDescriptionclass
Algorithms for dynamic programming (alignments) between pairs of SymbolLists.Methods in org.biojava.bio.dp.twohead with parameters of type DPModifier and TypeMethodDescriptionDPCompiler.generateBackwardClass
(DP dp) DPCompiler.generateForardClass
(DP dp) DPCompiler.generateViterbiClass
(DP dp) Constructors in org.biojava.bio.dp.twohead with parameters of type DPModifierConstructorDescriptionDPInterpreter
(DP dp) PairDPMatrix
(DP dp, SymbolList seq0, SymbolList seq1)