Uses of Interface
org.biojava.bio.gui.sequence.PairwiseSequenceRenderer
Packages that use PairwiseSequenceRenderer
Package
Description
Graphical displays of biological sequences and associated annotations.
-
Uses of PairwiseSequenceRenderer in org.biojava.bio.gui.sequence
Classes in org.biojava.bio.gui.sequence that implement PairwiseSequenceRendererModifier and TypeClassDescriptionclass
CrosshairRenderer
draws a crosshair, optionally with coordinates.class
PairwiseDiagonalRenderer
renders a region of similarity between two sequences as a straight line.class
PairwiseFilteringRenderer
wraps aPairwiseSequenceRenderer
and filters thePairwiseRenderContext
s passed to it.class
PairwiseOverlayRenderer
allows a list of otherPairwiseSequenceRenderer
s to superimpose their output.Methods in org.biojava.bio.gui.sequence that return PairwiseSequenceRendererModifier and TypeMethodDescriptionPairwiseFilteringRenderer.getRenderer()
getRenderer
return the current renderer.PairwiseSequencePanel.getRenderer()
getRenderer
returns the currentPairwiseSequenceRenderer
.Methods in org.biojava.bio.gui.sequence with parameters of type PairwiseSequenceRendererModifier and TypeMethodDescriptionprotected void
PairwiseOverlayRenderer._addRenderer
(PairwiseSequenceRenderer renderer) protected void
PairwiseOverlayRenderer._removeRenderer
(PairwiseSequenceRenderer renderer) void
PairwiseOverlayRenderer.addRenderer
(PairwiseSequenceRenderer renderer) addRenderer
adds a renderer.void
PairwiseOverlayRenderer.removeRenderer
(PairwiseSequenceRenderer renderer) removeRenderer
removes a renderer.void
PairwiseFilteringRenderer.setRenderer
(PairwiseSequenceRenderer renderer) setRenderer
sets the renderer.void
PairwiseSequencePanel.setRenderer
(PairwiseSequenceRenderer renderer) setRenderer
sets the currentPairwiseSequenceRenderer
.Constructors in org.biojava.bio.gui.sequence with parameters of type PairwiseSequenceRendererModifierConstructorDescriptionCreates a newPairwiseFilteringRenderer
which uses a filter which accepts all features.PairwiseFilteringRenderer
(PairwiseSequenceRenderer renderer, FeatureFilter filter, boolean recurse) Creates a newPairwiseFilteringRenderer
.Creates a newPairwiseRendererForwarder
.