Package org.biojava.bio.dp
Class ScoreType.Odds
java.lang.Object
org.biojava.bio.dp.ScoreType.Odds
- All Implemented Interfaces:
Serializable
,ScoreType
- Enclosing interface:
ScoreType
In this class, calculateScore returns the odds ratio
of a symbol being emitted. That is, the ratio of the
probability of a Symbol being emitted to it being
emitted by the null model.
- Author:
- Matthew Pocock
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.bio.dp.ScoreType
ScoreType.NullModel, ScoreType.Odds, ScoreType.Probability
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Field Summary
Fields inherited from interface org.biojava.bio.dp.ScoreType
NULL_MODEL, ODDS, PROBABILITY
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptiondouble
calculateScore
(Distribution dist, Symbol sym) Calculates the score associated with a distribution and a symbol.
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Constructor Details
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Odds
public Odds()
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Method Details
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calculateScore
Description copied from interface:ScoreType
Calculates the score associated with a distribution and a symbol.- Specified by:
calculateScore
in interfaceScoreType
- Throws:
IllegalSymbolException
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