Package org.biojavax.bio.seq.io
Class RichStreamWriter
java.lang.Object
org.biojavax.bio.seq.io.RichStreamWriter
Writes all of the sequences from a SequenceIterator to a stream with a
particular format.
This can be wired from a StreamReader to make a simple file-format conversion
utility, or can be used to write out the sequences in a database to disk.
- Since:
- 1.5
- Author:
- Matthew Pocock, Richard Holland
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Constructor Summary
ConstructorsConstructorDescriptionRichStreamWriter
(OutputStream os, RichSequenceFormat format) Generate a new RichStreamWriter to the stream os and using format. -
Method Summary
Modifier and TypeMethodDescriptionvoid
writeStream
(SequenceIterator ss, Namespace ns) Write each of the sequences in ss to the stream in the given format.
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Constructor Details
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RichStreamWriter
Generate a new RichStreamWriter to the stream os and using format.- Parameters:
os
- the OutputStream to write toformat
- the SequenceFormat to write with
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Method Details
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writeStream
Write each of the sequences in ss to the stream in the given format.- Parameters:
ss
- the SequenceIterator to loop over- Throws:
IOException
- if the stream has any problems
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