Package org.biojava.bio.seq
Interface OptimizableFilter
- All Superinterfaces:
FeatureFilter
,Serializable
- All Known Implementing Classes:
FeatureFilter.AnnotationContains
,FeatureFilter.ByAncestor
,FeatureFilter.ByAnnotation
,FeatureFilter.ByAnnotationType
,FeatureFilter.ByChild
,FeatureFilter.ByClass
,FeatureFilter.ByComponentName
,FeatureFilter.ByDescendant
,FeatureFilter.ByFeature
,FeatureFilter.ByPairwiseScore
,FeatureFilter.ByParent
,FeatureFilter.BySequenceName
,FeatureFilter.BySource
,FeatureFilter.ByType
,FeatureFilter.ContainedByLocation
,FeatureFilter.FrameFilter
,FeatureFilter.HasAnnotation
,FeatureFilter.OnlyChildren
,FeatureFilter.OnlyDescendants
,FeatureFilter.OverlapsLocation
,FeatureFilter.ShadowContainedByLocation
,FeatureFilter.ShadowOverlapsLocation
,FeatureFilter.StrandFilter
The interface for filters that can potentialy optimize themselves, and
compare themselves with other filters.
- Since:
- 1.2
- Author:
- Matthew Pocock
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Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter
FeatureFilter.And, FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySequenceName, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.Not, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.Or, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter
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Field Summary
Fields inherited from interface org.biojava.bio.seq.FeatureFilter
all, leaf, none, top_level
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Method Summary
Modifier and TypeMethodDescriptionboolean
isDisjoint
(FeatureFilter filt) Returns true if this filter is disjoint from filt - that is, there is no Feature that is accepted by both filters.boolean
Returns true if this filter is a proper subset of sup - that is, for every feature that matches this, it also matches sup.Methods inherited from interface org.biojava.bio.seq.FeatureFilter
accept
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Method Details
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isProperSubset
Returns true if this filter is a proper subset of sup - that is, for every feature that matches this, it also matches sup. The empty filter is a proper subset of all filters. All filters are a proper subset of the all filter. All filters are proper subsets of themselves.- Parameters:
sup
- the potential super set- Returns:
- true if sup contains all features contained by this filter
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isDisjoint
Returns true if this filter is disjoint from filt - that is, there is no Feature that is accepted by both filters. The empty filter is disjoint from all other filters. The all filter is disjoint from none.
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