Uses of Interface
org.biojava.bio.seq.StrandedFeature
Packages that use StrandedFeature
Package
Description
The classes and interfaces in this package cover common molecular
biological techniques such as restriction digests and PCR.
Classes and interfaces for defining biological sequences and informatics
objects.
The classes and interfaces for defining sequence similarity and
honology.
Standard in-memory implementations of
Sequence
and
Feature
.Rich implementations of Sequences, Locations and Features.
-
Uses of StrandedFeature in org.biojava.bio.molbio
Subinterfaces of StrandedFeature in org.biojava.bio.molbioModifier and TypeInterfaceDescriptioninterface
RestrictionSite
represents the recognition site of a restriction enzyme. -
Uses of StrandedFeature in org.biojava.bio.seq
Subinterfaces of StrandedFeature in org.biojava.bio.seqModifier and TypeInterfaceDescriptioninterface
Feature which represents a component in an assembly (contig).interface
Title: FramedFeature.interface
A feature that indicates that there is some remote feature that can't be represented entirely on a single Sequence. -
Uses of StrandedFeature in org.biojava.bio.seq.homol
Subinterfaces of StrandedFeature in org.biojava.bio.seq.homolModifier and TypeInterfaceDescriptioninterface
interface
SimilarityPairFeature
describes a pairwise similarity between two nucleotide sequences (as it extendsStrandedFeature
). -
Uses of StrandedFeature in org.biojava.bio.seq.impl
Classes in org.biojava.bio.seq.impl that implement StrandedFeatureModifier and TypeClassDescriptionclass
Title: SimpleFramedFeature.class
class
A no-frills implementation of a remote feature.class
SimpleRestrictionSite
represents the recognition site of a restriction enzyme.class
SimpleSimilarityPairFeature
represents a similarity between a query sequence and a subject sequence as produced by a search program.class
A no-frills implementation of StrandedFeature. -
Uses of StrandedFeature in org.biojavax.bio.seq
Subinterfaces of StrandedFeature in org.biojavax.bio.seqModifier and TypeInterfaceDescriptioninterface
Represents a feature that can be given name and rank and be moved from one sequence to another.Classes in org.biojavax.bio.seq that implement StrandedFeature