Uses of Interface
org.biojava.bio.symbol.FiniteAlphabet

Packages that use FiniteAlphabet
Package
Description
Classes to generate and describe sequence alignments.
Probability distributions over Alphabets.
HMM and Dynamic Programming Algorithms.
Graphical interfaces for biojava objects.
ABI Trace Handling.
Parser for Phred output
SSAHA sequence searching API.
Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
Event-driven parsing system for the Extensible Feature Format (XFF).
Utilities to aid in performing various physical analysis of proteins.
Interfaces and classes for representing sequence similarity search results.
Classes and interfaces for defining biological sequences and informatics objects.
Classes and interfaces for processing and producing flat-file representations of sequences.
Representation of the Symbols that make up a sequence, and locations within them.
 
This package is used to perform regular expression searches of SymbolLists defined in arbitrary Alphabets.
Rich implementations of Sequences, Locations and Features.
Utility functions and helper classes