Uses of Class
org.biojava.bio.symbol.Edit
Packages that use Edit
Package
Description
Classes to generate and describe sequence alignments.
HMM and Dynamic Programming Algorithms.
Classes and interfaces for defining biological sequences and informatics
objects.
The classes and interfaces for defining sequence similarity and
honology.
Standard in-memory implementations of
Sequence
and
Feature
.Representation of the Symbols that make up a sequence, and locations within
them.
Interface between biojava and biosql databases
Rich implementations of Sequences, Locations and Features.
-
Uses of Edit in org.biojava.bio.alignment
Methods in org.biojava.bio.alignment with parameters of type Edit -
Uses of Edit in org.biojava.bio.dp
Methods in org.biojava.bio.dp with parameters of type Edit -
Uses of Edit in org.biojava.bio.seq
Methods in org.biojava.bio.seq with parameters of type Edit -
Uses of Edit in org.biojava.bio.seq.homol
Methods in org.biojava.bio.seq.homol with parameters of type Edit -
Uses of Edit in org.biojava.bio.seq.impl
Methods in org.biojava.bio.seq.impl with parameters of type Edit -
Uses of Edit in org.biojava.bio.symbol
Methods in org.biojava.bio.symbol with parameters of type EditModifier and TypeMethodDescriptionvoid
void
void
void
Apply and edit to the SymbolList as specified by Edit.void
Apply an edit to the SymbolList as specified by the edit object. -
Uses of Edit in org.biojavax.bio.db.biosql
Methods in org.biojavax.bio.db.biosql with parameters of type EditModifier and TypeMethodDescriptionvoid
BioSQLRichSequenceHandler.edit
(RichSequence seq, Edit edit) Apply an edit to the Sequence as specified by the edit object. -
Uses of Edit in org.biojavax.bio.seq
Methods in org.biojavax.bio.seq with parameters of type EditModifier and TypeMethodDescriptionvoid
DummyRichSequenceHandler.edit
(RichSequence seq, Edit edit) Apply an edit to the Sequence as specified by the edit object.void
Apply an edit to the SymbolList as specified by the edit object.void
RichSequenceHandler.edit
(RichSequence seq, Edit edit) Apply an edit to the Sequence as specified by the edit object.void
Apply an edit to the SymbolList as specified by the edit object.