Uses of Interface
org.biojava.bio.Annotation

Packages that use Annotation
Package
Description
The core classes that will be used throughout the bio packages.
HMM and Dynamic Programming Algorithms.
The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR.
Support for reading and writing GFF3.
Tools for working with profile Hidden Markov Models from the HMMer package.
A flat-file ascii index of ascii flat files as per the OBDA specification.
Parser for Phred output
Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
Process files as streams of records, each with tags with values.
Event-driven parsing system for the Extensible Feature Format (XFF).
Interfaces and classes for representing sequence similarity search results.
Classes and interfaces for defining biological sequences and informatics objects.
Standard in-memory implementations of Sequence and Feature.
Classes and interfaces for processing and producing flat-file representations of sequences.
Classes for converting between AGAVE XML and BioJava objects.
Representation of the Symbols that make up a sequence, and locations within them.
Taxonomy object for representing species information.
A general-purpose API for ontologies.
The Biojava extensions packages, classes that extend the core biojava functionality
Classes to represent biological entities and their relationships.
Rich implementations of Sequences, Locations and Features.
Extensions to the biojava ontology model that represent BioSQL ontology.