Uses of Interface
org.biojava.bio.taxa.TaxonFactory
Packages that use TaxonFactory
Package
Description
General purpose Sequence storage in a relational database.
Classes and interfaces for processing and producing flat-file representations
of sequences.
Taxonomy object for representing species information.
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Uses of TaxonFactory in org.biojava.bio.seq.db.biosql
Methods in org.biojava.bio.seq.db.biosql with parameters of type TaxonFactoryModifier and TypeMethodDescriptionstatic void
TaxonSQL.automaticUpdate
(Connection conn, DBHelper helper, TaxonFactory factory, File delnodes, File merged) Deprecated.This method tries to perform a complete update according to the givenTaxonFactory
, which already contains the newes taxa and the files available at the NCBI-FTP-Site. -
Uses of TaxonFactory in org.biojava.bio.seq.io
Constructors in org.biojava.bio.seq.io with parameters of type TaxonFactoryModifierConstructorDescriptionFactory
(SequenceBuilderFactory delegateFactory, TaxonFactory taxonFactory, TaxonParser taxonParser, String sciNameKey, String commonNameKey, String ncbiTaxonKey) OrganismParser
(SequenceBuilder delegate, TaxonFactory taxonFactory, TaxonParser taxonParser, String sciNameKey, String commonNameKey, String ncbiTaxonKey) Deprecated. -
Uses of TaxonFactory in org.biojava.bio.taxa
Classes in org.biojava.bio.taxa that implement TaxonFactoryModifier and TypeClassDescriptionclass
Deprecated.class
Deprecated.replaced by classes inorg.biojavax.bio.taxa
Methods in org.biojava.bio.taxa with parameters of type TaxonFactoryModifier and TypeMethodDescriptionEbiFormat.parse
(TaxonFactory taxonFactory, String taxonString) Deprecated.TaxonParser.parse
(TaxonFactory taxonFactory, String taxonString) Deprecated.Convert a stringified Taxon into a Taxon instance.
org.biojavax.bio.taxa