Uses of Interface
org.biojava.bio.annodb.AnnotationDB
Packages that use AnnotationDB
Package
Description
Databases of generic structured data (annotation) objects.
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Uses of AnnotationDB in org.biojava.bio.annodb
Classes in org.biojava.bio.annodb that implement AnnotationDBModifier and TypeClassDescriptionclass
A database of Annotation instances backed by an indexed file set.class
An implementation of AnnotationDB that lazily applies a filter.class
An implementation of AnnotationDB that does a JIT search on another set.class
An AnnotationDB that provides a merged view of a list of underlying DBs.class
A no-frills implementation of AnnotationDB.Fields in org.biojava.bio.annodb declared as AnnotationDBModifier and TypeFieldDescriptionstatic final AnnotationDB
AnnotationDB.EMPTY
An AnnotationDB that is always empty.Methods in org.biojava.bio.annodb that return AnnotationDBModifier and TypeMethodDescriptionAnnotationDB.filter
(AnnotationType at) Find all Annotation instances in this DB that are of a particular type.IndexedAnnotationDB.filter
(AnnotationType at) LazyFilteredAnnotationDB.filter
(AnnotationType at) LazySearchedAnnotationDB.filter
(AnnotationType at) MergingAnnotationDB.filter
(AnnotationType at) SimpleAnnotationDB.filter
(AnnotationType at) AnnotationDB.search
(AnnotationType at) Find all Annotation instances in this DB and any Annotations that are child properties of these that match an AnnotationType.IndexedAnnotationDB.search
(AnnotationType at) LazyFilteredAnnotationDB.search
(AnnotationType at) LazySearchedAnnotationDB.search
(AnnotationType at) MergingAnnotationDB.search
(AnnotationType at) SimpleAnnotationDB.search
(AnnotationType at) Methods in org.biojava.bio.annodb with parameters of type AnnotationDBModifier and TypeMethodDescriptionvoid
MergingAnnotationDB.addAnnotationDB
(AnnotationDB toAdd) Add a DB to be merged in this view.void
MergingAnnotationDB.removeAnnotationDB
(AnnotationDB toRemove) Remove a DB from this view.Constructors in org.biojava.bio.annodb with parameters of type AnnotationDBModifierConstructorDescriptionLazyFilteredAnnotationDB
(String name, AnnotationDB source, AnnotationType schema) Create a new DB by wrapping another with a schema.LazySearchedAnnotationDB
(String name, AnnotationDB source, AnnotationType schema) Create a new DB from an old one by applying a schema.