Uses of Class
org.biojava.bio.symbol.UkkonenSuffixTree.SuffixNode
Packages that use UkkonenSuffixTree.SuffixNode
Package
Description
Representation of the Symbols that make up a sequence, and locations within
them.
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Uses of UkkonenSuffixTree.SuffixNode in org.biojava.bio.symbol
Methods in org.biojava.bio.symbol that return UkkonenSuffixTree.SuffixNodeModifier and TypeMethodDescriptionUkkonenSuffixTree.getRoot()
UkkonenSuffixTree.jumpTo
(UkkonenSuffixTree.SuffixNode starting, CharSequence source, int from, int to) Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string.UkkonenSuffixTree.walkTo
(UkkonenSuffixTree.SuffixNode starting, String source, int from, int to) This method is used to walk down the tree, from a given node.Methods in org.biojava.bio.symbol with parameters of type UkkonenSuffixTree.SuffixNodeModifier and TypeMethodDescriptionprotected ArrayList
UkkonenSuffixTree.getAllNodes
(UkkonenSuffixTree.SuffixNode root, ArrayList list, boolean leavesOnly) protected CharSequence
UkkonenSuffixTree.getEdgeLabel
(UkkonenSuffixTree.SuffixNode child) protected int
UkkonenSuffixTree.getEdgeLength
(UkkonenSuffixTree.SuffixNode child) Tree navigation methodsprotected CharSequence
UkkonenSuffixTree.getLabel
(UkkonenSuffixTree.SuffixNode node) protected int
UkkonenSuffixTree.getPathEnd
(UkkonenSuffixTree.SuffixNode node) protected int
UkkonenSuffixTree.getPathLength
(UkkonenSuffixTree.SuffixNode node) UkkonenSuffixTree.jumpTo
(UkkonenSuffixTree.SuffixNode starting, CharSequence source, int from, int to) Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string.UkkonenSuffixTree.walkTo
(UkkonenSuffixTree.SuffixNode starting, String source, int from, int to) This method is used to walk down the tree, from a given node.