Class FeatureFilter.ShadowContainedByLocation

java.lang.Object
org.biojava.bio.seq.FeatureFilter.ShadowContainedByLocation
All Implemented Interfaces:
Serializable, FeatureFilter, OptimizableFilter
Enclosing interface:
FeatureFilter

public static final class FeatureFilter.ShadowContainedByLocation extends Object implements OptimizableFilter
A filter that accepts all features whose shadow is contained by a specified Location. The shadow is defined as the interval between the minimum and maximum positions of the feature's location. For features with contiguous locations, this filter is equivalent to FeatureFilter.ContainedByLocation.
Since:
1.3
Author:
Thomas Down
See Also:
  • Constructor Details

    • ShadowContainedByLocation

      Creates a filter that returns everything contained within loc.
      Parameters:
      loc - the location that will contain the accepted features
  • Method Details

    • getLocation

    • accept

      public boolean accept(Feature f)
      Returns true if the feature is within this filter's location.
      Specified by:
      accept in interface FeatureFilter
      Parameters:
      f - the Feature to evaluate
      Returns:
      true if this feature is to be selected in, or false if it is to be ignored
    • equals

      public boolean equals(Object o)
      Overrides:
      equals in class Object
    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object
    • isProperSubset

      public boolean isProperSubset(FeatureFilter sup)
      Description copied from interface: OptimizableFilter
      Returns true if this filter is a proper subset of sup - that is, for every feature that matches this, it also matches sup. The empty filter is a proper subset of all filters. All filters are a proper subset of the all filter. All filters are proper subsets of themselves.
      Specified by:
      isProperSubset in interface OptimizableFilter
      Parameters:
      sup - the potential super set
      Returns:
      true if sup contains all features contained by this filter
    • isDisjoint

      public boolean isDisjoint(FeatureFilter filt)
      Description copied from interface: OptimizableFilter
      Returns true if this filter is disjoint from filt - that is, there is no Feature that is accepted by both filters. The empty filter is disjoint from all other filters. The all filter is disjoint from none.
      Specified by:
      isDisjoint in interface OptimizableFilter
    • toString

      public String toString()
      Overrides:
      toString in class Object