Uses of Interface
org.biojava.bio.seq.RealizingFeatureHolder
Packages that use RealizingFeatureHolder
Package
Description
Parser for Phred output
Classes and interfaces for defining biological sequences and informatics
objects.
Standard in-memory implementations of
Sequence
and
Feature
.-
Uses of RealizingFeatureHolder in org.biojava.bio.program.phred
Classes in org.biojava.bio.program.phred that implement RealizingFeatureHolderModifier and TypeClassDescriptionclass
PhredSequence is an extension of SimpleSequence that implements Qualitative to hold Phred quality scores. -
Uses of RealizingFeatureHolder in org.biojava.bio.seq
Classes in org.biojava.bio.seq that implement RealizingFeatureHolderModifier and TypeClassDescriptionclass
A circular view onto another Sequence object.class
A Sequence which is assembled from other sequences contained in a set of ComponentFeature objects.class
A Sequence which is assembled from other sequences contained in a set of ComponentFeature objects. -
Uses of RealizingFeatureHolder in org.biojava.bio.seq.impl
Classes in org.biojava.bio.seq.impl that implement RealizingFeatureHolderModifier and TypeClassDescriptionclass
A reverse complement view ontoSequence
interface.class
A no-frills implementation of a feature.class
Title: SimpleFramedFeature.class
class
A no-frills implementation of a remote feature.class
SimpleRestrictionSite
represents the recognition site of a restriction enzyme.class
A basic implementation of theSequence
interface.class
SimpleSimilarityPairFeature
represents a similarity between a query sequence and a subject sequence as produced by a search program.class
A no-frills implementation of StrandedFeature.class
A view onto another Sequence object.