Uses of Interface
org.biojava.bio.program.homologene.SimilarityType
Packages that use SimilarityType
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Uses of SimilarityType in org.biojava.bio.program.homologene
Classes in org.biojava.bio.program.homologene that implement SimilarityTypeFields in org.biojava.bio.program.homologene declared as SimilarityTypeModifier and TypeFieldDescriptionstatic final SimilarityType
SimilarityType.CURATED
static final SimilarityType
SimilarityType.MULTIPLE
static final SimilarityType
SimilarityType.TWIN
Methods in org.biojava.bio.program.homologene that return SimilarityTypeModifier and TypeMethodDescriptionOrthoPair.getSimilarity()
gets the second orthologue in the orthology relationship.SimpleOrthoPair.getSimilarity()
Methods in org.biojava.bio.program.homologene with parameters of type SimilarityTypeModifier and TypeMethodDescriptionHomologeneDB.createOrthoPair
(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity) Create a computed orthology entry.SimpleHomologeneDB.createOrthoPair
(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity) Constructors in org.biojava.bio.program.homologene with parameters of type SimilarityTypeModifierConstructorDescriptionSimpleOrthoPair
(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity) constructor for the computed form of an orthology relationship.