Uses of Package
org.biojava.bio.seq.io

Packages that use org.biojava.bio.seq.io
Package
Description
Java wrappers for interacting with external bioinformatics tools.
Parser for Phred output
SSAHA sequence searching API.
Event-driven parsing system for the Extensible Feature Format (XFF).
Collections of biological sequence data.
Classes and interfaces for processing and producing flat-file representations of sequences.
Classes for converting between AGAVE XML and BioJava objects.
Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
Representation of the Symbols that make up a sequence, and locations within them.
Tools for loading and saving ontologies.
 
Classes to support the I/O of Nexus files.
Classes to support the reading and writing of PHYLIP format.
Rich implementations of Sequences, Locations and Features.
Classes to support the I/O of RichSequence and Bioentry objects.