Uses of Interface
org.biojava.bio.gui.sequence.PairwiseRenderContext
Packages that use PairwiseRenderContext
Package
Description
Graphical displays of biological sequences and associated annotations.
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Uses of PairwiseRenderContext in org.biojava.bio.gui.sequence
Classes in org.biojava.bio.gui.sequence that implement PairwiseRenderContextModifier and TypeClassDescriptionclass
APairwiseSequencePanel
is a panel that displays a pair of sequences; one sequence (the primary) may be either left-to-right (HORIZONTAL) or from top-to-bottom (VERTICAL).class
SubPairwiseRenderContext
is a rendering context which wraps a delegate context and effectively hides some of the delegate's properties with its own.Methods in org.biojava.bio.gui.sequence that return PairwiseRenderContextModifier and TypeMethodDescriptionprotected PairwiseRenderContext
PairwiseFilteringRenderer.getSubContext
(PairwiseRenderContext context) getSubContext
creates a new context which hasFeatureHolder
s filtered using the current filter.Methods in org.biojava.bio.gui.sequence with parameters of type PairwiseRenderContextModifier and TypeMethodDescriptionprotected PairwiseRenderContext
PairwiseFilteringRenderer.getSubContext
(PairwiseRenderContext context) getSubContext
creates a new context which hasFeatureHolder
s filtered using the current filter.void
CrosshairRenderer.paint
(Graphics2D g2, PairwiseRenderContext context) void
PairwiseDiagonalRenderer.paint
(Graphics2D g2, PairwiseRenderContext context) paint
renders the feature as a simple line.void
PairwiseFilteringRenderer.paint
(Graphics2D g2, PairwiseRenderContext context) void
PairwiseOverlayRenderer.paint
(Graphics2D g2, PairwiseRenderContext context) paint
applies all renderers in the order in which they were added.void
PairwiseSequenceRenderer.paint
(Graphics2D g2, PairwiseRenderContext prc) paint
s some or all of the information about the sequence pair.CrosshairRenderer.processMouseEvent
(PairwiseRenderContext context, MouseEvent me, List path) processMouseEvent
processes anyMouseEvent
s directed to the renderer.PairwiseDiagonalRenderer.processMouseEvent
(PairwiseRenderContext context, MouseEvent me, List path) processMouseEvent
acts on a mouse gesture.PairwiseFilteringRenderer.processMouseEvent
(PairwiseRenderContext context, MouseEvent me, List path) PairwiseOverlayRenderer.processMouseEvent
(PairwiseRenderContext context, MouseEvent me, List path) processMouseEvent
produces aSequenceViewerEvent
in response to a mouse gesture.PairwiseSequenceRenderer.processMouseEvent
(PairwiseRenderContext prc, MouseEvent me, List path) processMouseEvent
produces aSequenceViewerEvent
in response to a mouse gesture.Constructors in org.biojava.bio.gui.sequence with parameters of type PairwiseRenderContextModifierConstructorDescriptionSubPairwiseRenderContext
(PairwiseRenderContext context, SymbolList symbols, SymbolList secondarySymbols, FeatureHolder features, FeatureHolder secondaryFeatures, RangeLocation range, RangeLocation secondaryRange) Creates a newSubPairwiseRenderContext
.