Uses of Class
org.biojava.bio.molbio.RestrictionEnzyme
Packages that use RestrictionEnzyme
Package
Description
The classes and interfaces in this package cover common molecular
biological techniques such as restriction digests and PCR.
Standard in-memory implementations of
Sequence
and
Feature
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Uses of RestrictionEnzyme in org.biojava.bio.molbio
Fields in org.biojava.bio.molbio declared as RestrictionEnzymeMethods in org.biojava.bio.molbio that return RestrictionEnzymeModifier and TypeMethodDescriptionstatic RestrictionEnzyme
getEnzyme
returns an enzyme by name.RestrictionSite.getEnzyme()
getEnzyme
returns the enzyme which cuts at this site.RestrictionEnzyme.getPrototype()
The prototype is aRestrictionEnzyme
that represents a set of isoshizomers.Methods in org.biojava.bio.molbio with parameters of type RestrictionEnzymeModifier and TypeMethodDescriptionvoid
RestrictionMapper.addEnzyme
(RestrictionEnzyme enzyme) addEnzyme
adds an enzyme to be searched for in theSequence
.static Annotation
RestrictionEnzymeManager.getAnnotation
(RestrictionEnzyme enzyme) getAnnotation
returns an immutable, static annotation describing the enzyme.static Pattern[]
RestrictionEnzymeManager.getPatterns
(RestrictionEnzyme enzyme) getPatterns
returns twoPattern
objects for an enzyme, one matches the forward strand and one the reverse.static String
RestrictionEnzymeManager.getSuppliers
(RestrictionEnzyme enzyme) getSuppliers
returns a string describing the suppliers of this enzyme according to REBASE encoding for commercial sources or an empty String if the enzyme is not commecially available.static void
RestrictionEnzymeManager.register
(RestrictionEnzyme enzyme, Set isoschizomers) register
regisiters a newRestrictionEnzyme
with the manager.void
RestrictionMapper.removeEnzyme
(RestrictionEnzyme enzyme) removeEnzyme
removes an enzyme from those to be searched for in theSequence
.void
RestrictionEnzyme.setProtype
(RestrictionEnzyme proto) Set the prototype of thisRestrictionEnzyme
. -
Uses of RestrictionEnzyme in org.biojava.bio.seq.impl
Methods in org.biojava.bio.seq.impl that return RestrictionEnzyme