Uses of Class
org.biojava.bio.chromatogram.graphic.ChromatogramGraphic.Option
Packages that use ChromatogramGraphic.Option
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Uses of ChromatogramGraphic.Option in org.biojava.bio.chromatogram.graphic
Fields in org.biojava.bio.chromatogram.graphic declared as ChromatogramGraphic.OptionModifier and TypeFieldDescriptionstatic final ChromatogramGraphic.Option
ChromatogramGraphic.Option.DRAW_CALL_A
Option indicating whether to fill in the callboxes for calls of nucleotide A.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.DRAW_CALL_C
Option indicating whether to fill in the callboxes for calls of nucleotide C.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.DRAW_CALL_G
Option indicating whether to fill in the callboxes for calls of nucleotide G.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.DRAW_CALL_OTHER
Option indicating whether to fill in the callboxes for non-base calls (gaps, ambiguities).static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.DRAW_CALL_SEPARATORS
Option indicating whether to draw vertical lines separating the calls.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.DRAW_CALL_T
Option indicating whether to fill in the callboxes for calls of nucleotide T.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.DRAW_TRACE_A
Option indicating whether to draw the chromatogram trace for nucleotide A.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.DRAW_TRACE_C
Option indicating whether to draw the chromatogram trace for nucleotide C.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.DRAW_TRACE_G
Option indicating whether to draw the chromatogram trace for nucleotide G.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.DRAW_TRACE_T
Option indicating whether to draw the chromatogram trace for nucleotide T.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.FROM_TRACE_SAMPLE
Option indicating the lowest (leftmost) trace sample that should be drawn.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.HEIGHT_IS_AUTHORITATIVE
Option indicating whether height or vertical scale is the authoritative measure.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.HORIZONTAL_NONLINEAR_SCALER
Option specifying the non-linear scaling function to apply, as embodied in aChromatogramNonlinearScaler
object.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.SEPARATOR_COLOR
Option indicating the color that the call separators should be.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.SEPARATOR_STROKE
Option providing the the stroke to use for drawing call separators.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.SUBPATH_LENGTH
To improve performance, the drawing objects for the chromatogram traces are precomputed.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.TO_TRACE_SAMPLE
Option indicating the highest (rightmost) trace sample that should be drawn.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.TRACE_STROKE
Option providing the the stroke to use for drawing the chromatogram traces.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.USE_CUSTOM_STROKE
Option indicating whether to use custom strokes when drawing traces and separators.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.USE_PER_SHAPE_TRANSFORM
Option indicating whether to apply scaling and translation transforms to each shape individually or to apply a single transform to the graphics context.static final ChromatogramGraphic.Option
ChromatogramGraphic.Option.WIDTH_IS_AUTHORITATIVE
Option indicating whether width or horizontal scale is the authoritative measure.Methods in org.biojava.bio.chromatogram.graphic that return ChromatogramGraphic.OptionModifier and TypeMethodDescriptionstatic final ChromatogramGraphic.Option
Looks up anOption
instance based on its string description.Methods in org.biojava.bio.chromatogram.graphic with parameters of type ChromatogramGraphic.OptionModifier and TypeMethodDescriptionfloat
ChromatogramGraphic.getFloatOption
(ChromatogramGraphic.Option opt) Helper method for converting aNumber
-valued option into afloat
primitive.int
ChromatogramGraphic.getIntOption
(ChromatogramGraphic.Option opt) Helper method for converting aNumber
-valued option into anint
primitive.ChromatogramGraphic.getOption
(ChromatogramGraphic.Option opt) Returns the current value for the specified option.boolean
ChromatogramGraphic.optionIsTrue
(ChromatogramGraphic.Option opt) Helper method for converting aBoolean
-valued option into aboolean
primitive.void
ChromatogramGraphic.setOption
(ChromatogramGraphic.Option opt, Object value) Sets a new value for the specified option.