Package org.biojava.bio.seq
Class FeatureFilter.ShadowContainedByLocation
java.lang.Object
org.biojava.bio.seq.FeatureFilter.ShadowContainedByLocation
- All Implemented Interfaces:
Serializable
,FeatureFilter
,OptimizableFilter
- Enclosing interface:
FeatureFilter
public static final class FeatureFilter.ShadowContainedByLocation
extends Object
implements OptimizableFilter
A filter that accepts all features whose shadow is contained by a specified
Location
. The shadow is defined as the interval between the
minimum and maximum positions of the feature's location. For features
with contiguous locations, this filter is equivalent to
FeatureFilter.ContainedByLocation
.- Since:
- 1.3
- Author:
- Thomas Down
- See Also:
-
Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter
FeatureFilter.And, FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySequenceName, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.Not, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.Or, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter
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Field Summary
Fields inherited from interface org.biojava.bio.seq.FeatureFilter
all, leaf, none, top_level
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Constructor Summary
ConstructorsConstructorDescriptionCreates a filter that returns everything contained within loc. -
Method Summary
Modifier and TypeMethodDescriptionboolean
Returns true if the feature is within this filter's location.boolean
int
hashCode()
boolean
isDisjoint
(FeatureFilter filt) Returns true if this filter is disjoint from filt - that is, there is no Feature that is accepted by both filters.boolean
Returns true if this filter is a proper subset of sup - that is, for every feature that matches this, it also matches sup.toString()
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Constructor Details
-
ShadowContainedByLocation
Creates a filter that returns everything contained within loc.- Parameters:
loc
- the location that will contain the accepted features
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Method Details
-
getLocation
-
accept
Returns true if the feature is within this filter's location.- Specified by:
accept
in interfaceFeatureFilter
- Parameters:
f
- the Feature to evaluate- Returns:
- true if this feature is to be selected in, or false if it is to be ignored
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equals
-
hashCode
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isProperSubset
Description copied from interface:OptimizableFilter
Returns true if this filter is a proper subset of sup - that is, for every feature that matches this, it also matches sup. The empty filter is a proper subset of all filters. All filters are a proper subset of the all filter. All filters are proper subsets of themselves.- Specified by:
isProperSubset
in interfaceOptimizableFilter
- Parameters:
sup
- the potential super set- Returns:
- true if sup contains all features contained by this filter
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isDisjoint
Description copied from interface:OptimizableFilter
Returns true if this filter is disjoint from filt - that is, there is no Feature that is accepted by both filters. The empty filter is disjoint from all other filters. The all filter is disjoint from none.- Specified by:
isDisjoint
in interfaceOptimizableFilter
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toString
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