Uses of Class
org.biojava.bio.symbol.RangeLocation
Packages that use RangeLocation
Package
Description
Graphical displays of biological sequences and associated annotations.
Classes for the handling of the layout of a WrappedSequencePanel.
Classes and interfaces for defining biological sequences and informatics
objects.
Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
Representation of the Symbols that make up a sequence, and locations within
them.
-
Uses of RangeLocation in org.biojava.bio.gui.sequence
Methods in org.biojava.bio.gui.sequence that return RangeLocationModifier and TypeMethodDescriptionHeadlessRenderContext.getRange()
PairwiseSequencePanel.getRange()
getRange
returns aRangeLocation
representing the region of the sequence currently being rendered.SequencePanel.getRange()
SequencePanelWrapper.getRange()
SequencePoster.getRange()
Deprecated.SequenceRenderContext.getRange()
The range of the SymbolList to render.SubPairwiseRenderContext.getRange()
SubSequenceRenderContext.getRange()
TranslatedSequencePanel.getRange()
getRange
returns aRangeLocation
representing the region of the sequence currently being rendered.PairwiseRenderContext.getSecondaryRange()
getSecondaryRange
returns the range of the secondary sequence currently rendered.PairwiseSequencePanel.getSecondaryRange()
getSecondaryRange
returns aRangeLocation
representing the region of the secondary sequence currently being rendered.SubPairwiseRenderContext.getSecondaryRange()
SequencePoster.getVisibleRange()
Deprecated.Methods in org.biojava.bio.gui.sequence with parameters of type RangeLocationModifier and TypeMethodDescriptionprotected SequenceRenderContext
GappedRenderer.makeContext
(SequenceRenderContext src, RangeLocation loc) void
SequencePanel.setRange
(RangeLocation range) void
SequencePanelWrapper.setRange
(RangeLocation loc) Constructors in org.biojava.bio.gui.sequence with parameters of type RangeLocationModifierConstructorDescriptionHeadlessRenderContext
(Sequence seq, RangeLocation range, int width) SubPairwiseRenderContext
(PairwiseRenderContext context, SymbolList symbols, SymbolList secondarySymbols, FeatureHolder features, FeatureHolder secondaryFeatures, RangeLocation range, RangeLocation secondaryRange) Creates a newSubPairwiseRenderContext
.SubSequenceRenderContext
(SequenceRenderContext src, SymbolList symbols, FeatureHolder features, RangeLocation range) SubSequenceRenderContext
(SequenceRenderContext src, SymbolList symbols, FeatureHolder features, RangeLocation range, int symOffset) -
Uses of RangeLocation in org.biojava.bio.gui.sequence.tracklayout
Methods in org.biojava.bio.gui.sequence.tracklayout that return RangeLocationModifier and TypeMethodDescriptionSimpleTrackLayout.getRanges()
TrackLayout.getRanges()
UserDefinedTrackLayout.getRanges()
Methods in org.biojava.bio.gui.sequence.tracklayout with parameters of type RangeLocationModifier and TypeMethodDescriptionvoid
SimpleTrackLayout.setRange
(RangeLocation loc) void
TrackLayout.setRange
(RangeLocation loc) void
UserDefinedTrackLayout.setRange
(RangeLocation loc) Constructors in org.biojava.bio.gui.sequence.tracklayout with parameters of type RangeLocation -
Uses of RangeLocation in org.biojava.bio.seq
Methods in org.biojava.bio.seq with parameters of type RangeLocationModifier and TypeMethodDescriptionstatic Sequence
SequenceTools.maskSequence
(Sequence seq, RangeLocation loc) Mask of a sequence. -
Uses of RangeLocation in org.biojava.bio.seq.io.game
Methods in org.biojava.bio.seq.io.game with parameters of type RangeLocationModifier and TypeMethodDescriptionvoid
GAMEFeatureSetHandler.reportExon
(RangeLocation range, StrandedFeature.Strand strand) void
GAMETranscriptCallbackItf.reportExon
(RangeLocation range, StrandedFeature.Strand strand) Allows nesting class that manages a transcript template to gain information about its extent from nested elements that represent exons. -
Uses of RangeLocation in org.biojava.bio.symbol
Subclasses of RangeLocation in org.biojava.bio.symbolModifier and TypeClassDescriptionclass
Produced by LocationTools as a result of union operations.