Package org.biojava.bio.seq
Interface SequenceFactory
- All Known Implementing Classes:
SimpleSequenceFactory
public interface SequenceFactory
Deprecated.
use org.biojavax.bio.seq.io.RichSequenceBuilder or
use org.biojavax.bio.seq.io.SequenceBuilder
The interface for objects that will manufacture sequences.
The factory layer is in here as sequences are potentialy heavy-weight, so we want to decouple their possibly complicated creation from the code that wants to make them.
- Author:
- Matthew Pocock
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Method Summary
Modifier and TypeMethodDescriptioncreateSequence
(SymbolList symList, String uri, String name, Annotation annotation) Deprecated.Creates a sequence using these parameters.
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Method Details
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createSequence
Deprecated.Creates a sequence using these parameters.- Parameters:
symList
- the SymbolList defining the 'sequence'uri
- the uri of the sequence. This will be returned by the getURN() method on Sequence.name
- the nameannotation
- a hint for the annotation of the resulting sequence- Returns:
- a new Sequence object
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