Package org.biojava.bio.seq.io.agave
Class AGAVESeqPropHandler
java.lang.Object
org.biojava.bio.seq.io.agave.StAXContentHandlerBase
org.biojava.bio.seq.io.agave.StAXPropertyHandler
org.biojava.bio.seq.io.agave.AGAVESeqPropHandler
- All Implemented Interfaces:
StAXContentHandler
Deals with sequence code
- Author:
- Hanning Ni Doubletwist Inc, Greg Cox
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Field Summary
FieldsFields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler
featureListener, staxenv
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Method Summary
Modifier and TypeMethodDescriptionvoid
characters
(char[] ch, int start, int length) Signal a span of character data in the XML input.void
endElementHandler
(String nsURI, String localName, String qName, StAXContentHandler handler) Element specific exit handler Subclass to do anything useful.Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler
addHandler, endElement, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement, startElementHandler
Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase
endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
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Field Details
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AGAVE_SEQ_PROP_HANDLER_FACTORY
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Method Details
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characters
Description copied from class:StAXContentHandlerBase
Signal a span of character data in the XML input.- Specified by:
characters
in interfaceStAXContentHandler
- Overrides:
characters
in classStAXContentHandlerBase
- Parameters:
ch
- an array of charactersstart
- index of the first significant character for this event.length
- number of characters significant to this event.- Throws:
SAXException
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endElementHandler
public void endElementHandler(String nsURI, String localName, String qName, StAXContentHandler handler) throws SAXException Description copied from class:StAXPropertyHandler
Element specific exit handler Subclass to do anything useful.- Overrides:
endElementHandler
in classStAXPropertyHandler
- Throws:
SAXException
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