Package org.biojava.bio.program.abi


package org.biojava.bio.program.abi
ABI Trace Handling.

The ABI trace file format is a proprietary file format that has achieved the status orf a de facto standard given the dominance of the company in sequencing technology.

  • Class
    Description
    An implementation of Chromatogram to encapulsulate chromatogram data extracted from the files produced by ABI sequencers, such as the the 377 and the 3700.
    A general base parser for files produced by ABI software.
    Concatenation of the Seekable and DataInput interfaces.
    An aggregate immutable type for an ABIF tagged data record.
    Useful functionality for working with fasta files where the quality of the DNA is encoded as upper and lower case DNA characters.
    Title: ABITrace

    ABITrace is a class for managing ABI file information, it is capable of opening an ABI file and storing the most important fields, which can be recalled as simple java types.