Uses of Class
org.biojavax.bio.seq.RichLocation.Strand
Packages that use RichLocation.Strand
Package
Description
Interface between biojava and biosql databases
Rich implementations of Sequences, Locations and Features.
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Uses of RichLocation.Strand in org.biojavax.bio.db.biosql
Methods in org.biojavax.bio.db.biosql that return RichLocation.StrandConstructors in org.biojavax.bio.db.biosql with parameters of type RichLocation.StrandModifierConstructorDescriptionCreates a filter that returns everything on strand str. -
Uses of RichLocation.Strand in org.biojavax.bio.seq
Fields in org.biojavax.bio.seq declared as RichLocation.StrandModifier and TypeFieldDescriptionstatic final RichLocation.Strand
RichLocation.Strand.NEGATIVE_STRAND
The negative strand is represented by the symbol '-' and has the number -1.static final RichLocation.Strand
RichLocation.Strand.POSITIVE_STRAND
The positive strand is represented by the symbol '+' and has the number 1.static final RichLocation.Strand
RichLocation.Strand.UNKNOWN_STRAND
The unknown strand is represented by the symbol '?'Methods in org.biojavax.bio.seq that return RichLocation.StrandModifier and TypeMethodDescriptionstatic RichLocation.Strand
Returns the strand object that matches the symbol given.static RichLocation.Strand
RichLocation.Strand.forValue
(int value) Returns the strand object that matches the number given.EmptyRichLocation.getStrand()
Retrieves the strand associated with this location.MultiSourceCompoundRichLocation.getStrand()
Retrieves the strand associated with this location.RichLocation.getStrand()
Retrieves the strand associated with this location.SimpleRichLocation.getStrand()
Retrieves the strand associated with this location.Methods in org.biojavax.bio.seq with parameters of type RichLocation.StrandModifier and TypeMethodDescriptionprotected void
SimpleRichLocation.setStrand
(RichLocation.Strand strand) Constructors in org.biojavax.bio.seq with parameters of type RichLocation.StrandModifierConstructorDescriptionSimpleRichLocation
(Position pos, int rank, RichLocation.Strand strand) Creates a new instance of SimpleRichSequenceLocation that points to a single position.SimpleRichLocation
(Position pos, int rank, RichLocation.Strand strand, CrossRef crossRef) Creates a new instance of SimpleRichSequenceLocation that points to a single position on another sequence.SimpleRichLocation
(Position min, Position max, int rank, RichLocation.Strand strand) Creates a new instance of SimpleRichSequenceLocation that points to a range position.SimpleRichLocation
(Position min, Position max, int rank, RichLocation.Strand strand, CrossRef crossRef) Creates a new instance of SimpleRichSequenceLocation that points to a range position on another sequence.