Uses of Interface
org.biojavax.bio.seq.io.RichSeqIOListener
Packages that use RichSeqIOListener
Package
Description
Classes to support the I/O of RichSequence and
Bioentry objects.
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Uses of RichSeqIOListener in org.biojavax.bio.seq.io
Subinterfaces of RichSeqIOListener in org.biojavax.bio.seq.ioModifier and TypeInterfaceDescriptioninterface
An interface for objects that can build RichSequences.Classes in org.biojavax.bio.seq.io that implement RichSeqIOListenerModifier and TypeClassDescriptionclass
This is purely for debugging purposes.class
This class implements all methods of RichSeqIOListener and takes no action.class
Constructs BioEntry objects by listening to events.Methods in org.biojavax.bio.seq.io with parameters of type RichSeqIOListenerModifier and TypeMethodDescriptionvoid
FastaFormat.processHeader
(String line, RichSeqIOListener rsiol, Namespace ns) Parse the Header information from the Fasta Description lineboolean
EMBLFormat.readRichSequence
(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.boolean
EMBLxmlFormat.readRichSequence
(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.boolean
FastaFormat.readRichSequence
(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rsiol, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.boolean
GenbankFormat.readRichSequence
(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.boolean
INSDseqFormat.readRichSequence
(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.boolean
RichSequenceFormat.readRichSequence
(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener listener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.boolean
UniProtFormat.readRichSequence
(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.boolean
UniProtXMLFormat.readRichSequence
(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.