Package org.biojava.bio.dp.twohead
Class MatrixPairDPCursor
java.lang.Object
org.biojava.bio.dp.twohead.AbstractMatrixPairDPCursor
org.biojava.bio.dp.twohead.MatrixPairDPCursor
- All Implemented Interfaces:
PairDPCursor
- Author:
- Matthew Pocock
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Field Summary
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Constructor Summary
ConstructorsConstructorDescriptionMatrixPairDPCursor
(SymbolList seq1, SymbolList seq2, int depth1, int depth2, PairDPMatrix matrix, EmissionCache eCache) -
Method Summary
Methods inherited from class org.biojava.bio.dp.twohead.AbstractMatrixPairDPCursor
getDepth, press
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Constructor Details
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MatrixPairDPCursor
public MatrixPairDPCursor(SymbolList seq1, SymbolList seq2, int depth1, int depth2, PairDPMatrix matrix, EmissionCache eCache) throws IllegalSymbolException - Throws:
IllegalSymbolException
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Method Details
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hasNext
Description copied from interface:PairDPCursor
test wether the cursor can be advanced further -
next
Description copied from interface:PairDPCursor
retrieve the next block of cells
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