Package org.biojava.bio.symbol
Interface ManyToOneTranslationTable
- All Superinterfaces:
TranslationTable
- All Known Implementing Classes:
AbstractManyToOneTranslationTable
,SimpleGeneticCodeTable
,SimpleManyToOneTranslationTable
A translation table that will handle the many-to-one mappings
that you see, for example, with genetic codes.
It differs from a ReversibleTranslationTable in that the reverse translation returns a Set of Symbols in the source alphabet that translate to give that Symbol in the target Alphabet.
- Author:
- David Huen
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Field Summary
Fields inherited from interface org.biojava.bio.symbol.TranslationTable
ALT_YEAST_NUC, ASCID_MITO, BACTERIAL, BLEPH_MNUC, CHLORO_MITO, CILIATE_NUC, ECHIN_MITO, EUPL_NUC, FWORM_MITO, INVERT_MITO, MOLD_MITO, SCENE_MITO, TREMA_MITO, UNIVERSAL, VERT_MITO, YEAST_MITO
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Method Summary
Modifier and TypeMethodDescriptionuntranslate
(Symbol sym) Translate a single symbol from target alphabet to the source alphabet.Methods inherited from interface org.biojava.bio.symbol.TranslationTable
getSourceAlphabet, getTargetAlphabet, translate
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Method Details
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untranslate
Translate a single symbol from target alphabet to the source alphabet.- Parameters:
sym
- the Symbol to reverse-translate (member of target alphabet)- Returns:
- a Set containing symbols that translate to the specified Symbol.
- Throws:
IllegalSymbolException
- if sym is not a member of the target alphabet
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