Package org.biojava.bio.seq.io
Class StreamWriter
java.lang.Object
org.biojava.bio.seq.io.StreamWriter
Writes all of the sequences from a SequenceIterator to a stream with a
particular format.
This can be wired from a StreamReader to make a simple file-format conversion utility, or can be used to write out the sequences in a database to disk.
More functionality is offered by RichStreamWriter
,
Use of this interface is prefered.
- Author:
- Matthew Pocock
- See Also:
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Constructor Summary
ConstructorsConstructorDescriptionStreamWriter
(OutputStream os, SequenceFormat format) Generate a new StreamWriter to the stream os and using format. -
Method Summary
Modifier and TypeMethodDescriptionvoid
Write each of the sequences in ss to the stream in the given format.
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Constructor Details
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StreamWriter
Generate a new StreamWriter to the stream os and using format.- Parameters:
os
- the OutputStream to write toformat
- the SequenceFormat to write with
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Method Details
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writeStream
Write each of the sequences in ss to the stream in the given format.- Parameters:
ss
- the SequenceIterator to loop over- Throws:
IOException
- if the stream has any problems
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