Package org.biojava.bio.program.sax
package org.biojava.bio.program.sax
Parsers which offer XML representations of the output from common
bioinformatics tools.
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ClassesClassDescriptionA facade class allowing for direct SAX2-like parsing of the native output from Blast-like bioinformatics software.A SAX2 parser for dealing with a multiple sequence alignment as produced by ClustalW outputing .aln format.
FastaSearchSAXParser
is a SAX2 compliant parser for '-m 10' format output from the the Fasta search program (see the Fasta documentation for details of this format).A SAX2 parser for dealing with multiple sequences in FASTA format.A SAX2 parser for dealing with native PDB files.A SAX2 parser for dealing with a sequence alignments.