Class HomologeneTools
java.lang.Object
org.biojava.bio.program.homologene.HomologeneTools
Homologene is a NCBI dataset that curates sets
of orthologues from the reference model ogranisms.
This class is a Collection of methods for handling data from the Homologene dataset.
- Author:
- David Huen
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic Taxon
createTaxon
(int taxonID, String description) add a Taxonstatic Taxon
getTaxon
(int taxonID) get the Taxon corresponding to this Taxon IDstatic void
instantiateDB
(URL url, HomologeneBuilder builder) instantiate a HomologeneDB.
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Constructor Details
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HomologeneTools
public HomologeneTools()
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Method Details
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getTaxon
get the Taxon corresponding to this Taxon ID -
createTaxon
add a Taxon- Throws:
DuplicateTaxonException
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instantiateDB
public static void instantiateDB(URL url, HomologeneBuilder builder) throws OperationNotSupportedException, FileNotFoundException, IOException instantiate a HomologeneDB.Currently, only file protocol support is available.
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