Package org.biojava.bio.program.unigene
Interface UnigeneCluster
- All Superinterfaces:
Annotatable
,Changeable
A single unigene cluster.
This represents all of the information available about a single unigene cluster. This includes the sequences that are in it, the unique sequence that is its representative, the cluster id and all the annotation available via the data file. Much of the annotation may be accessible via the getAnnotation() method.
There is much more information in the Unigene clusters than just the id,
title and sequences. This is all stoored in the annotation associated with
the cluster. The annotation bundle conforms to the schema in
UnigeneTools.UNIGENE_ANNOTATION
.
- Author:
- Matthew Pocock
-
Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
Annotatable.AnnotationForwarder
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Field Summary
Fields inherited from interface org.biojava.bio.Annotatable
ANNOTATION
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Method Summary
Methods inherited from interface org.biojava.bio.Annotatable
getAnnotation
Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener
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Method Details
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getID
The public unigene ID.- Returns:
- get the cluster ID as a String
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getTitle
The cluster title.- Returns:
- the cluster title as a String
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getAll
All sequences that map to this cluster.- Returns:
- a SequenceDB of all sequences mapping to this cluster.
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getUnique
The unique sequence that is used as a representative for this cluster.- Returns:
- the cluster's unique Sequence
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