Uses of Interface
org.biojava.bio.search.SeqSimilaritySearchResult
Packages that use SeqSimilaritySearchResult
Package
Description
Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
Interfaces and classes for representing sequence similarity search results.
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Uses of SeqSimilaritySearchResult in org.biojava.bio.program.ssbind
Methods in org.biojava.bio.program.ssbind that return SeqSimilaritySearchResult -
Uses of SeqSimilaritySearchResult in org.biojava.bio.search
Classes in org.biojava.bio.search that implement SeqSimilaritySearchResultModifier and TypeClassDescriptionclass
Deprecated.SimpleSeqSimilaritySearchResult has been made Annotatable and is now functionally identical.class
SimpleSeqSimilaritySearchResult
objects represent a result of a search of aSymbolList
against the sequences within aSequenceDB
object.Methods in org.biojava.bio.search that return SeqSimilaritySearchResultModifier and TypeMethodDescriptionSearchBuilder.makeSearchResult()
ThemakeSearchResult
method returns aSeqSimilaritySearchResult
instance created from accumulated data.SeqSimilaritySearcher.search
(SymbolList querySeq, SequenceDB db, Map searchParameters) Using this sequence similarity searcher, search with the given sequence against the given sequence database.