Package org.biojava.bio.seq.io
Class EmblLikeLocationParser
java.lang.Object
org.biojava.bio.seq.io.EmblLikeLocationParser
Deprecated.
Use org.biojavax.bio.seq.io framework instead
EmblLikeLocationParser
parses EMBL/Genbank style
locations. Supported location forms:
123 invalid input: '<'123 or >123 (123.567) (123.567)..789 123..(567.789) (123.345)..(567.789) 123..456 invalid input: '<'123..567 or 123..>567 or invalid input: '<'123..>567 123^567 AL123465:(123..567)
- Since:
- 1.2
- Author:
- Keith James, Greg Cox
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Method Summary
Modifier and TypeMethodDescriptionparseLocation
(String location, Feature.Template theTemplate) Deprecated.parseLocation
creates aLocation
from the String and returns a stranded location.
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Method Details
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parseLocation
public Feature.Template parseLocation(String location, Feature.Template theTemplate) throws BioException Deprecated.parseLocation
creates aLocation
from the String and returns a stranded location.- Parameters:
location
- a locationString
.theTemplate
- the template to be filled with the parsed out location information.- Throws:
BioException
- if an error occurs.
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