Uses of Interface
org.biojava.bio.alignment.AlignmentElement
Packages that use AlignmentElement
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Uses of AlignmentElement in org.biojava.bio.alignment
Classes in org.biojava.bio.alignment that implement AlignmentElementModifier and TypeClassDescriptionclass
SimpleSimpleAlignment is a simple implementation of AlignmentElement.Fields in org.biojava.bio.alignment with type parameters of type AlignmentElementMethods in org.biojava.bio.alignment that return AlignmentElementMethods in org.biojava.bio.alignment with parameters of type AlignmentElementModifier and TypeMethodDescriptionvoid
ARAlignment.addSequence
(AlignmentElement ae) void
FlexibleAlignment.addSequence
(AlignmentElement ae) add a new a alignment usings a location to the reference sequence.Constructor parameters in org.biojava.bio.alignment with type arguments of type AlignmentElementModifierConstructorDescriptionFlexibleAlignment
(List<AlignmentElement> seqList) construct this object with the reference sequence which can either be a gappedSymbolList or not label in all cases refers to an object that holds the display name (generally just a String). since more than one sequence in an alignment could have the same name this works as long as the labels are different objects even though they may hold the same name.