Uses of Enum Class
org.biojava.nbio.alignment.Alignments.ProfileProfileAlignerType
Packages that use Alignments.ProfileProfileAlignerType
-
Uses of Alignments.ProfileProfileAlignerType in org.biojava.nbio.alignment
Methods in org.biojava.nbio.alignment that return Alignments.ProfileProfileAlignerTypeModifier and TypeMethodDescriptionStandardRescoreRefiner.getProfileProfileAligner()
Returns the enum constant of this class with the specified name.static Alignments.ProfileProfileAlignerType[]
Alignments.ProfileProfileAlignerType.values()
Returns an array containing the constants of this enum class, in the order they are declared.Methods in org.biojava.nbio.alignment with parameters of type Alignments.ProfileProfileAlignerTypeModifier and TypeMethodDescriptionAlignments.getProgressiveAlignment
(GuideTree<S, C> tree, Alignments.ProfileProfileAlignerType type, GapPenalty gapPenalty, SubstitutionMatrix<C> subMatrix) Factory method to run the profile-profile alignments of a progressive multiple sequence alignment concurrently.Constructors in org.biojava.nbio.alignment with parameters of type Alignments.ProfileProfileAlignerTypeModifierConstructorDescriptionStandardRescoreRefiner
(Alignments.PairInProfileScorerType pips, Alignments.ProfileProfileAlignerType ppa) -
Uses of Alignments.ProfileProfileAlignerType in org.biojava.nbio.alignment.template
Methods in org.biojava.nbio.alignment.template that return Alignments.ProfileProfileAlignerTypeModifier and TypeMethodDescriptionPartitionRefiner.getProfileProfileAligner()
Returns class type of profile-profile alignment subroutine.RescoreRefiner.getProfileProfileAligner()
Returns class type of profile-profile alignment subroutine.