Uses of Class
org.biojava.nbio.core.sequence.location.template.AbstractLocation
Packages that use AbstractLocation
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Uses of AbstractLocation in org.biojava.nbio.core.sequence.features
Methods in org.biojava.nbio.core.sequence.features that return AbstractLocationModifier and TypeMethodDescriptionAbstractFeature.getLocations()
A feature could be a single sequence position like a mutation or a post translational modification of an amino acid.FeatureDbReferenceInfo.getLocations()
FeatureInterface.getLocations()
The location(s) of this feature where the location should contain a reference to parent and sequence etc.Methods in org.biojava.nbio.core.sequence.features with parameters of type AbstractLocationModifier and TypeMethodDescriptionvoid
AbstractFeature.setLocation
(AbstractLocation loc) A feature could be a single sequence position like a mutation or a post translational modification of an amino acid.void
FeatureDbReferenceInfo.setLocation
(AbstractLocation loc) void
FeatureInterface.setLocation
(AbstractLocation loc) The new location for this feature. -
Uses of AbstractLocation in org.biojava.nbio.core.sequence.location
Subclasses of AbstractLocation in org.biojava.nbio.core.sequence.locationModifier and TypeClassDescriptionstatic class
Used to represent bond locations equivalent to bond(7,8) or bond(7).static class
Deprecated in INSDC yet still appears; equivalent to the order() directive except no 5' to 3' ordering is defined.static class
Deprecated in INSDC; refers to a set of locations of which one location could be valid e.g.static class
Used to describe a 5' to 3' ordering but no firm assurance it is correctclass
SequenceLocation<S extends AbstractSequence<C>,
C extends Compound> A location in a sequence that keeps a reference to its parent sequenceclass
Very basic implementation of the Location interface which defines a series of simple constructors.