Uses of Class
org.forester.phylogeny.data.Accession
Packages that use Accession
Package
Description
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Uses of Accession in org.forester.archaeopteryx
Method parameters in org.forester.archaeopteryx with type arguments of type AccessionModifier and TypeMethodDescriptionTreePanelUtil.createUrisForPdbWeb
(PhylogenyNode node, List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel) -
Uses of Accession in org.forester.phylogeny.data
Methods in org.forester.phylogeny.data that return AccessionMethods in org.forester.phylogeny.data that return types with arguments of type AccessionMethods in org.forester.phylogeny.data with parameters of type AccessionModifier and TypeMethodDescriptionvoid
Sequence.addCrossReference
(Accession cross_reference) int
void
Sequence.setAccession
(Accession accession) -
Uses of Accession in org.forester.util
Methods in org.forester.util that return AccessionModifier and TypeMethodDescriptionstatic final Accession
SequenceAccessionTools.obtainAccessorFromDataFields
(PhylogenyNode n) static final Accession
SequenceAccessionTools.obtainFromSeqAccession
(PhylogenyNode n) static final Accession
SequenceAccessionTools.parseAccessorFromString
(String s) -
Uses of Accession in org.forester.ws.seqdb
Methods in org.forester.ws.seqdb that return AccessionModifier and TypeMethodDescriptionstatic final Accession
SequenceDbWsTools.obtainSeqAccession
(PhylogenyNode node) Methods in org.forester.ws.seqdb that return types with arguments of type AccessionModifier and TypeMethodDescriptionEbiDbEntry.getCrossReferences()
SequenceDatabaseEntry.getCrossReferences()
UniProtEntry.getCrossReferences()
Methods in org.forester.ws.seqdb with parameters of type AccessionModifier and TypeMethodDescriptionstatic SequenceDatabaseEntry
SequenceDbWsTools.obtainEmblEntry
(Accession acc) static SequenceDatabaseEntry
SequenceDbWsTools.obtainEmblEntry
(Accession acc, int max_lines_to_return) static SequenceDatabaseEntry
SequenceDbWsTools.obtainRefSeqEntryFromEmbl
(Accession acc) static SequenceDatabaseEntry
SequenceDbWsTools.obtainRefSeqEntryFromEmbl
(Accession acc, int max_lines_to_return) SequenceDbWsTools.queryEmblDb
(Accession acc, int max_lines_to_return) SequenceDbWsTools.queryEmblDbForRefSeqEntry
(Accession id, int max_lines_to_return)