Clustal Omega 1.2.4
tree.h
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1/*********************************************************************
2 * Clustal Omega - Multiple sequence alignment
3 *
4 * Copyright (C) 2010 University College Dublin
5 *
6 * Clustal-Omega is free software; you can redistribute it and/or
7 * modify it under the terms of the GNU General Public License as
8 * published by the Free Software Foundation; either version 2 of the
9 * License, or (at your option) any later version.
10 *
11 * This file is part of Clustal-Omega.
12 *
13 ********************************************************************/
14
15/*
16 * RCS $Id: tree.h 193 2011-02-07 15:45:21Z andreas $
17 */
18
19#ifndef CLUSTALO_TREE_H
20#define CLUSTALO_TREE_H
21
22#include "symmatrix.h"
23#include "muscle_tree.h"
24#include "seq.h"
25
27
28extern void
30 char **labels, symmatrix_t *tmat, char *ftree);
31
32extern int
34 mseq_t *mseq, char *ftree);
35
36extern void
37TraverseTree(int **piOrderLR_p,
38 tree_t *tree, mseq_t *mseq);
39
40#endif
structure for storing multiple sequences
Definition seq.h:47
symmetric matrix structure
Definition symmatrix.h:48
guide-tree structure
Definition muscle_tree.h:59
@ PRNT_NODE
Definition tree.h:26
@ LEFT_NODE
Definition tree.h:26
@ RGHT_NODE
Definition tree.h:26
@ DIFF_NODE
Definition tree.h:26
int GuideTreeFromFile(tree_t **tree, mseq_t *mseq, char *ftree)
Definition tree.c:99
void TraverseTree(int **piOrderLR_p, tree_t *tree, mseq_t *mseq)
Depth first traversal of tree, i.e. leaf nodes (sequences) will be visited first. Order can be used t...
Definition tree.c:166
void GuideTreeUpgma(tree_t **tree, char **labels, symmatrix_t *tmat, char *ftree)
Creates a UPGMA guide tree. This is a frontend function to the ported Muscle UPGMA code ().
Definition tree.c:54