Package jebl.evolution.distances
Class JukesCantorDistanceMatrix
- java.lang.Object
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- jebl.evolution.distances.BasicDistanceMatrix
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- jebl.evolution.distances.JukesCantorDistanceMatrix
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- All Implemented Interfaces:
DistanceMatrix
public class JukesCantorDistanceMatrix extends BasicDistanceMatrix
Compute jukes-cantor corrected distance matrix for a set of aligned sequences. Adapted from BEAST code by joseph.- Version:
- $Id: JukesCantorDistanceMatrix.java 998 2009-04-09 03:06:19Z richardmoir $
- Author:
- Andrew Rambaut, Korbinian Strimmer, Joseph Heled
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Constructor Summary
Constructors Constructor Description JukesCantorDistanceMatrix(Alignment alignment, ProgressListener progress)
JukesCantorDistanceMatrix(Alignment alignment, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)
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Method Summary
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Methods inherited from class jebl.evolution.distances.BasicDistanceMatrix
getDistance, getDistance, getDistances, getSize, getSubmatrix, getTaxa
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Constructor Detail
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JukesCantorDistanceMatrix
public JukesCantorDistanceMatrix(Alignment alignment, ProgressListener progress) throws CannotBuildDistanceMatrixException
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JukesCantorDistanceMatrix
public JukesCantorDistanceMatrix(Alignment alignment, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) throws CannotBuildDistanceMatrixException
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