Uses of Interface
jebl.evolution.graphs.Graph
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Packages that use Graph Package Description jebl.evolution.graphs jebl.evolution.trees -
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Uses of Graph in jebl.evolution.graphs
Methods in jebl.evolution.graphs with parameters of type Graph Modifier and Type Method Description static int
Graph.Utils. getDegree(Graph graph, Node node)
boolean
Utils. isAcyclical(Graph graph)
boolean
Utils. isConnected(Graph graph)
boolean
Utils. isTree(Graph graph)
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Uses of Graph in jebl.evolution.trees
Subinterfaces of Graph in jebl.evolution.trees Modifier and Type Interface Description interface
RootedTree
A tree with a root (node with maximum height).interface
Tree
A rooted or unrooted tree.Classes in jebl.evolution.trees that implement Graph Modifier and Type Class Description class
AbstractRootedTree
class
CompactRootedTree
A memory efficient rooted tree.class
FilteredRootedTree
class
MutableRootedTree
A simple rooted tree providing some ability to manipulate the tree.class
ReRootedTree
A rooted tree concrete class that wraps another tree and provides a differently rooted view of that tree.class
RootedFromUnrooted
Root an unrooted tree.class
RootedSubtree
A simple, immutable rooted tree implementation that is a subtree of an existing tree subtending a specified set of taxa..class
SimpleRootedTree
A simple, and initially immutable rooted tree implementation.class
SimpleTree
A basic implementation on an unrooted tree.class
SortedRootedTree
class
TransformedRootedTree
This RootedTree class wraps another RootedTree and transforms the branch lengths and node heights using various functions.
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