Class CalculateSplitRates


  • public class CalculateSplitRates
    extends java.lang.Object
    Created by IntelliJ IDEA. User: msuchard Date: Dec 18, 2006 Time: 1:13:51 PM To change this template use File | Settings | File Templates.
    • Field Detail

      • numRateBoxes

        public int numRateBoxes
      • numTimeBoxes

        public int numTimeBoxes
      • edgeFraction

        public double edgeFraction
    • Constructor Detail

      • CalculateSplitRates

        public CalculateSplitRates​(NexusImporter importer)
    • Method Detail

      • loadTrees

        public void loadTrees​(int maxTrees,
                              int burnIn)
                       throws java.io.IOException,
                              ImportException
        Throws:
        java.io.IOException
        ImportException
      • displayStatistics

        public void displayStatistics()
      • addTreeToDensityMap

        public void addTreeToDensityMap​(jebl.evolution.trees.CalculateSplitRates.DensityMap densityMap,
                                        RootedTree tree)
      • displayIntervals

        public void displayIntervals()
      • findTimeIntervals

        public void findTimeIntervals()
      • main

        public static void main​(java.lang.String[] args)
        Parameters:
        args - args[0] = Beast tree log, args[1] = max number of trees to read args[2] = number of burnin trees to discard args[3] = proportion file name, args[4] = density map filename