Package jebl.evolution.trees
Class CalculateSplitRates
- java.lang.Object
-
- jebl.evolution.trees.CalculateSplitRates
-
public class CalculateSplitRates extends java.lang.Object
Created by IntelliJ IDEA. User: msuchard Date: Dec 18, 2006 Time: 1:13:51 PM To change this template use File | Settings | File Templates.
-
-
Field Summary
Fields Modifier and Type Field Description double
edgeFraction
java.lang.String
INDICATOR
int
numRateBoxes
int
numTimeBoxes
java.lang.String
RATE
-
Constructor Summary
Constructors Constructor Description CalculateSplitRates(NexusImporter importer)
-
Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addTreeToDensityMap(jebl.evolution.trees.CalculateSplitRates.DensityMap densityMap, RootedTree tree)
void
displayIntervals()
void
displayStatistics()
void
findTimeIntervals()
void
loadTrees(int maxTrees, int burnIn)
static void
main(java.lang.String[] args)
-
-
-
Field Detail
-
INDICATOR
public final java.lang.String INDICATOR
- See Also:
- Constant Field Values
-
RATE
public final java.lang.String RATE
- See Also:
- Constant Field Values
-
numRateBoxes
public int numRateBoxes
-
numTimeBoxes
public int numTimeBoxes
-
edgeFraction
public double edgeFraction
-
-
Constructor Detail
-
CalculateSplitRates
public CalculateSplitRates(NexusImporter importer)
-
-
Method Detail
-
loadTrees
public void loadTrees(int maxTrees, int burnIn) throws java.io.IOException, ImportException
- Throws:
java.io.IOException
ImportException
-
displayStatistics
public void displayStatistics()
-
addTreeToDensityMap
public void addTreeToDensityMap(jebl.evolution.trees.CalculateSplitRates.DensityMap densityMap, RootedTree tree)
-
displayIntervals
public void displayIntervals()
-
findTimeIntervals
public void findTimeIntervals()
-
main
public static void main(java.lang.String[] args)
- Parameters:
args
- args[0] = Beast tree log, args[1] = max number of trees to read args[2] = number of burnin trees to discard args[3] = proportion file name, args[4] = density map filename
-
-