All Classes
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Class Summary Class Description Alignment Objects of this class represent a sequence alignmentAngle Objects of this class represent an angleAngles Collection of methods for analysing anglesApplication Parent class of JGromacs applications.Atom Objects of this class represent a single atomAtomType Objects of this class represent an atom typeDistances Collection of methods for analysing distancesDynamics Collection of methods for analysing molecular motionsFrameIndexSet Objects of this class represent a single frame index setGNM Objects of this class represent a Gaussian Network Model (GNM) of a proteinIndexSet Objects of this class represent a single index setIndexSetList Objects of this class represent a list of index setsIOData This class contains static methods for IO of data objectsIOMath This class contains static methods for IO of ArrayList and Matrix objectsPoint3D Objects of this class represent a single 3D pointPointList Objects of this class represent a list of 3D pointsResidue Objects of this class represent a single residueResidueType Objects of this class represent a residue typeSequence Objects of this class represent a single amino acid sequenceSequencePosition Objects of this class represent a single sequence positionSimilarity Collection of methods for measuring structural similarityStructure Objects of this class represent a single structureSuperposition Collection of methods for superposing structuresTemplateApplication Template JGromacs applicationTrajectory Objects of this class represent a single trajectory