Uses of Class
pal.tree.CladeSystem
Packages that use CladeSystem
Package
Description
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
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Uses of CladeSystem in pal.tree
Methods in pal.tree that return CladeSystemModifier and TypeMethodDescriptionstatic CladeSystem
creates a clade system from a tree (using a pre-specified order of sequences)static CladeSystem
creates a clade system from a tree (using tree-induced order of sequences)static CladeSystem[]
CladeSystem.getCladeSystems
(Tree[] trees) Methods in pal.tree with parameters of type CladeSystemModifier and TypeMethodDescriptionstatic void
CladeSystem.calculateCladeProbabilities
(Tree tree, CladeSystem[] cladeSystems)