Uses of Interface
pal.eval.LHCalculator.Generator
Packages that use LHCalculator.Generator
Package
Description
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
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Uses of LHCalculator.Generator in pal.eval
Methods in pal.eval that return LHCalculator.GeneratorModifier and TypeMethodDescriptionLHCalculator.Factory.createSeries
(int numberOfCategories, DataType dt) Methods in pal.eval with parameters of type LHCalculator.GeneratorModifier and TypeMethodDescriptionstatic final UnconstrainedLikelihoodModel.Instance
SimpleUnconstrainedLikelihoodModel.createInstance
(LHCalculator.Generator base, SubstitutionModel model) Create a SimpleUnconstrainedLikelihoodModel instanceLHCalculator.Generator.createNewExternal
(LHCalculator.Generator parentGenerator) An obscure method, primarily used by the High Accuracy calculatorLHCalculator.Generator.createNewInternal
(LHCalculator.Generator patentGenerator) An obscure method, primarily used by the High Accuracy calculatorLHCalculator.Generator.createNewLeaf
(int[] patternStateMatchup, int numberOfPatterns, LHCalculator.Generator parentGenerator) Constructors in pal.eval with parameters of type LHCalculator.GeneratorModifierConstructorDescriptionSimpleLeafCalculator
(int[] patternStateMatchup, int numberOfPatterns, int numberOfStates, int numberOfCategories, LHCalculator.Generator parent)