Package pal.tree

Class NeighborJoiningTree

java.lang.Object
pal.tree.SimpleTree
pal.tree.NeighborJoiningTree
All Implemented Interfaces:
Serializable, IdGroup, Report, Units, UnitsProvider, Tree

public class NeighborJoiningTree extends SimpleTree
constructs a neighbor-joining tree from pairwise distances

Saitou, N., and Nei, M., (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol, 4(4):406-425,
Version:
$Id: NeighborJoiningTree.java,v 1.12 2003/09/16 03:54:18 matt Exp $
Author:
Korbinian Strimmer, Alexei Drummond
See Also:
  • Constructor Details

    • NeighborJoiningTree

      public NeighborJoiningTree(DistanceMatrix m)
      construct NJ tree
      Parameters:
      m - distance matrix