Package pal.alignment

Class ReadAlignment

All Implemented Interfaces:
Serializable, Alignment, IdGroup, Report

public class ReadAlignment extends AbstractAlignment
reads aligned sequence data from plain text files.

recognizes PHYLIP 3.4 INTERLEAVED, PHYLIP SEQUENTIAL, CLUSTAL and derived formats.

Other features: - the dot as "copy character" is recognized, - all base characters are capitalized, - automatic data type estimation - determination of corresponding base frequencies.

Version:
$Id: ReadAlignment.java,v 1.7 2003/09/04 03:22:34 matt Exp $
Author:
Korbinian Strimmer, Alexei Drummond, Alex Moore a.d.moore@ex.ac.uk
See Also: