Uses of Class
pal.alignment.AlignmentParseException
Packages that use AlignmentParseException
Package
Description
Classes dealing with sequence alignments, including methods for reading
and printing in several possible formats, as well as rearranging and
concatenating.
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Uses of AlignmentParseException in pal.alignment
Methods in pal.alignment that throw AlignmentParseExceptionModifier and TypeMethodDescriptionstatic final Alignment[]
AlignmentReaders.readAllPhylipClustalAlignments
(Reader r, DataType dt) Read an alignment in phylip/clustal/simple format.static final Alignment
AlignmentReaders.readPhylipClustalAlignment
(Reader r, DataType dt) Read an alignment in phylip/clustal/simple format.static final void
AlignmentReaders.readPhylipClustalAlignment
(Reader r, DataType dt, AlignmentReceiver receiver) Read an alignment in phylip/clustal/simple format.Constructors in pal.alignment that throw AlignmentParseExceptionModifierConstructorDescriptionReadAlignment
(PushbackReader input) read from streamReadAlignment
(String file) read from fileReadAlignmentOld
(PushbackReader input) read from streamReadAlignmentOld
(String file) read from file