Uses of Interface
pal.tree.TreeGenerator
Packages that use TreeGenerator
Package
Description
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
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Uses of TreeGenerator in pal.tree
Subinterfaces of TreeGenerator in pal.treeMethods in pal.tree that return TreeGeneratorModifier and TypeMethodDescriptionstatic final TreeGenerator
TreeGenerator.Utils.createNeighbourJoiningGenerator
(DistanceMatrixGenerator dataGenerator, String[] outgroupNames) Methods in pal.tree with parameters of type TreeGeneratorModifier and TypeMethodDescriptionstatic final Tree
TreeUtils.getReplicateCladeSupport
(String attributeName, Tree baseTree, TreeGenerator treeGenerator, int numberOfReplicates, AlgorithmCallback callback) Generates a tree which is identical to baseTree but has attributes (defined by attributeName) at all internal nodes excluding the root node signifying (as a value between 0 and 100) the replicate support by clade (that is the proportion of replicates that produce the sub clade under that node)