Uses of Class
pal.substmodel.NucleotideModel
Packages that use NucleotideModel
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Uses of NucleotideModel in pal.substmodel
Subclasses of NucleotideModel in pal.substmodelModifier and TypeClassDescriptionclass
Felsenstein 1981 model of nucleotide evolutionclass
Felsenstein 1984 (PHYLIP) model of nucleotide evolutionclass
GTR (general time reversible) model of nucleotide evolution Lanave, C., G.class
Hasegawa-Kishino-Yano model of nucleotide evolution Hasegawa, M., H.class
Tamura-Nei model of nucleotide evolution Tamura, K.Methods in pal.substmodel that return NucleotideModelModifier and TypeMethodDescriptionstatic NucleotideModel
NucleotideModel.getInstance
(int modelID, double[] params, double[] freq) Create nucleotide substitution model according to model type