Uses of Interface
pal.tree.TreeOperation
Packages that use TreeOperation
Package
Description
Classes to model population genetic processes using the coalescent.
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
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Uses of TreeOperation in pal.coalescent
Constructors in pal.coalescent with parameters of type TreeOperationModifierConstructorDescriptionSerialCoalescentGenerator
(TimeOrderCharacterData tocd, DemographicModel demographicModel, int numberOfTreesToGenerate, TreeOperation treeFinisher) Results will not contain alignmentsSerialCoalescentGenerator
(TimeOrderCharacterData tocd, DemographicModel demographicModel, int numberOfTreesToGenerate, TreeOperation treeFinisher, SimulatedAlignment.Factory alignmentFactory) SerialCoalescentGenerator
(TimeOrderCharacterData tocd, DemographicModel demographicModel, TreeOperation treeFinisher, SimulatedAlignment.Factory alignmentFactory) -
Uses of TreeOperation in pal.tree
Methods in pal.tree that return TreeOperationModifier and TypeMethodDescriptionstatic final TreeOperation
TreeOperation.Utils.createPipeline
(TreeOperation first, TreeOperation second) Creates a tree operation that first applies one tree operation and then applies a second operation to get it's resultstatic final TreeOperation
TreeOperation.Utils.createScale
(double scaleFactor, int resultingUnits) Create a tree operation that scales the input tree and changes the unitsstatic final TreeOperation
TreeOperation.Utils.getNoOperation()
Methods in pal.tree with parameters of type TreeOperationModifier and TypeMethodDescriptionstatic final TreeOperation
TreeOperation.Utils.createPipeline
(TreeOperation first, TreeOperation second) Creates a tree operation that first applies one tree operation and then applies a second operation to get it's result