libpappsomspp
Library for mass spectrometry
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pappso::TracePlusCombiner Class Reference

#include <tracepluscombiner.h>

Inheritance diagram for pappso::TracePlusCombiner:
pappso::TraceCombiner pappso::MassDataCombinerInterface

Public Member Functions

 TracePlusCombiner ()
 
 TracePlusCombiner (int decimal_places)
 
 TracePlusCombiner (const TracePlusCombiner &other)
 
 TracePlusCombiner (TracePlusCombinerCstSPtr other)
 
virtual ~TracePlusCombiner ()
 
virtual MapTracecombine (MapTrace &map_trace, const Trace &trace) const override
 
MapTracecombine (MapTrace &map_trace_out, const MapTrace &map_trace_in) const override
 
- Public Member Functions inherited from pappso::TraceCombiner
 TraceCombiner ()
 
 TraceCombiner (int decimal_places)
 
 TraceCombiner (const TraceCombiner &other)
 
 TraceCombiner (TraceCombinerCstSPtr other)
 
virtual ~TraceCombiner ()
 
- Public Member Functions inherited from pappso::MassDataCombinerInterface
 MassDataCombinerInterface (int decimal_places=-1)
 
virtual ~MassDataCombinerInterface ()
 
void setDecimalPlaces (int value)
 
int getDecimalPlaces () const
 
virtual MapTracecombine (MapTrace &map_trace, Iterator begin, Iterator end)
 

Friends

class MassSpectrumPlusCombiner
 

Additional Inherited Members

- Public Types inherited from pappso::MassDataCombinerInterface
using Iterator = std::vector< const Trace * >::const_iterator
 
- Protected Attributes inherited from pappso::MassDataCombinerInterface
int m_decimalPlaces = -1
 Number of decimals to use for the keys (x values)
 

Detailed Description

Definition at line 26 of file tracepluscombiner.h.

Constructor & Destructor Documentation

◆ TracePlusCombiner() [1/4]

pappso::TracePlusCombiner::TracePlusCombiner ( )

Definition at line 23 of file tracepluscombiner.cpp.

◆ TracePlusCombiner() [2/4]

pappso::TracePlusCombiner::TracePlusCombiner ( int  decimal_places)

Definition at line 28 of file tracepluscombiner.cpp.

29 : TraceCombiner(decimal_places)
30{
31}

◆ TracePlusCombiner() [3/4]

pappso::TracePlusCombiner::TracePlusCombiner ( const TracePlusCombiner other)

Definition at line 34 of file tracepluscombiner.cpp.

35 : TraceCombiner(other)
36{
37}

◆ TracePlusCombiner() [4/4]

pappso::TracePlusCombiner::TracePlusCombiner ( TracePlusCombinerCstSPtr  other)

Definition at line 40 of file tracepluscombiner.cpp.

41 : TraceCombiner(other)
42{
43 qDebug();
44}

◆ ~TracePlusCombiner()

pappso::TracePlusCombiner::~TracePlusCombiner ( )
virtual

Definition at line 47 of file tracepluscombiner.cpp.

48{
49}

Member Function Documentation

◆ combine() [1/2]

MapTrace & pappso::TracePlusCombiner::combine ( MapTrace map_trace,
const Trace trace 
) const
overridevirtual

Implements pappso::MassDataCombinerInterface.

Definition at line 53 of file tracepluscombiner.cpp.

54{
55 // qDebug() << "With m_decimalPlaces:" << m_decimalPlaces;
56
57 if(!trace.size())
58 return map_trace;
59
60 for(auto &current_data_point : trace)
61 {
62
63 // If the data point is 0-intensity, then do nothing!
64 if(!current_data_point.y)
65 continue;
66
67 double x = Utils::roundToDecimals(current_data_point.x, m_decimalPlaces);
68
69 std::map<double, double>::iterator map_iterator;
70
71 std::pair<std::map<pappso_double, pappso_double>::iterator, bool> result;
72
73 result = map_trace.insert(
74 std::pair<pappso_double, pappso_double>(x, current_data_point.y));
75
76 if(result.second)
77 {
78 // qDebug() << __FILE__ << "@" << __LINE__ << __FUNCTION__ << " ()";
79 // The new element was inserted, we have nothing to do.
80 }
81 else
82 {
83 // The key already existed! The item was not inserted. We need to
84 // update the value.
85
86 result.first->second += current_data_point.y;
87 }
88 }
89
90 // qDebug() << __FILE__ << "@" << __LINE__ << __FUNCTION__ << " ()"
91 //<< "Prior to returning map_trace, its size is:" << map_trace.size();
92 // qDebug();
93 return map_trace;
94}
int m_decimalPlaces
Number of decimals to use for the keys (x values)
static pappso_double roundToDecimals(pappso_double value, int decimal_places)
Definition utils.cpp:120

References pappso::MassDataCombinerInterface::m_decimalPlaces, pappso::Utils::roundToDecimals(), and pappso::x.

Referenced by combine(), and pappso::TimsData::getQualifiedMs1MassSpectrumByPrecursorId().

◆ combine() [2/2]

MapTrace & pappso::TracePlusCombiner::combine ( MapTrace map_trace_out,
const MapTrace map_trace_in 
) const
overridevirtual

Implements pappso::MassDataCombinerInterface.

Definition at line 98 of file tracepluscombiner.cpp.

100{
101 // qDebug() << __FILE__ << "@" << __LINE__ << __FUNCTION__ << " ()"
102 //<< "map trace size:" << map_trace_out.size()
103 //<< "trace size:" << trace.size();
104
105 if(!map_trace_in.size())
106 return map_trace_out;
107
108 return combine(map_trace_out, map_trace_in.toTrace());
109}
virtual MapTrace & combine(MapTrace &map_trace, const Trace &trace) const override

References combine(), and pappso::MapTrace::toTrace().

Friends And Related Symbol Documentation

◆ MassSpectrumPlusCombiner

friend class MassSpectrumPlusCombiner
friend

Definition at line 29 of file tracepluscombiner.h.


The documentation for this class was generated from the following files: