libpappsomspp
Library for mass spectrometry
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scorevalues.h
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/**
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* \file pappsomspp/processing/specglob/scorevalues.h
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* \date 06/11/2023
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* \author Olivier Langella
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* \brief scores to apply in comparisons
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*
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* C++ implementation of the SpecGlob algorithm described in :
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* 1. Prunier, G. et al. Fast alignment of mass spectra in large proteomics
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* datasets, capturing dissimilarities arising from multiple complex
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* modifications of peptides. BMC Bioinformatics 24, 421 (2023).
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*
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* HAL Id : hal-04296170 , version 1
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* Mot de passe : hxo20cl
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* DOI : 10.1186/s12859-023-05555-y
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*/
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/*
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* SpecGlobTool, Spectra to peptide alignment tool
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* Copyright (C) 2023 Olivier Langella
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* <olivier.langella@universite-paris-saclay.fr>
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*
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* This program is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program. If not, see <http://www.gnu.org/licenses/>.
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*
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*/
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#pragma once
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#include <cstdint>
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#include "../../exportinmportconfig.h"
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#include "
types.h
"
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namespace
pappso
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{
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namespace
specglob
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{
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/**
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* @todo write docs
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*/
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class
PMSPP_LIB_DECL
ScoreValues
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{
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public
:
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/**
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* Default constructor
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*/
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ScoreValues
();
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ScoreValues
(
const
ScoreValues
&other);
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/**
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* Destructor
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*/
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virtual
~ScoreValues
();
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const
ScoreValues
&operator=(
const
ScoreValues
&other);
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int
get(
ScoreValueType
type);
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void
set(
ScoreValueType
type,
int
value);
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private
:
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int
m_scoreTable[10];
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};
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}
// namespace specglob
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}
// namespace pappso
pappso::specglob::ScoreValues
Definition
scorevalues.h:55
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition
exportinmportconfig.h:14
pappso::specglob::ScoreValueType
ScoreValueType
Definition
types.h:57
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition
aa.cpp:39
types.h
This header contains all the type re-definitions and all the global variables definitions used in the...
pappsomspp
processing
specglob
scorevalues.h
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