libStatGen Software 1
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Pedigree Member List

This is the complete list of members for Pedigree, including all inherited members.

AddPerson(const char *famid, const char *pid, const char *fatid, const char *motid, int sex, bool delay_sort=false) (defined in Pedigree)Pedigree
affectionCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
affectionLookup (defined in PedigreeGlobals)PedigreeGlobalsstatic
affectionNames (defined in PedigreeGlobals)PedigreeGlobalsstatic
AlleleFrequenciesAvailable() (defined in PedigreeGlobals)PedigreeGlobalsstatic
AutosomalCheck() (defined in Pedigree)Pedigree
chromosomeX (defined in PedigreeGlobals)PedigreeGlobalsstatic
count (defined in Pedigree)Pedigree
CountAlleles(int marker) (defined in Pedigree)Pedigree
covariateCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
covariateLookup (defined in PedigreeGlobals)PedigreeGlobalsstatic
covariateNames (defined in PedigreeGlobals)PedigreeGlobalsstatic
Dichotomize(int trait, double mean=_NAN_) (defined in Pedigree)Pedigree
DichotomizeAll(double mean=_NAN_) (defined in Pedigree)Pedigree
EstimateFrequencies(int estimator, bool quiet=false) (defined in Pedigree)Pedigree
ExtractFamily(int id, Pedigree &new_ped) (defined in Pedigree)Pedigree
ExtractOnAffection(int a, Pedigree &new_ped, int target_status=2) (defined in Pedigree)Pedigree
families (defined in Pedigree)Pedigree
familyCount (defined in Pedigree)Pedigree
Filter(IntArray &filter) (defined in Pedigree)Pedigree
FindFamily(const char *famid) (defined in Pedigree)Pedigree
FindPerson(const char *famid, const char *pid) (defined in Pedigree)Pedigree
FlagMissingMarkers(IntArray &missingMarkers) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetAffectionID(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetCovariateID(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetMarkerID(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetMarkerInfo(String &name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetMarkerInfo(int marker) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetOrderedMarkers(IntArray &markers) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetStringID(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetTraitID(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GrowMarkerInfo() (defined in PedigreeGlobals)PedigreeGlobalsstatic
haveTwins (defined in Pedigree)Pedigree
InheritanceCheck(bool abortIfInconsistent=true) (defined in Pedigree)Pedigree
Load(IFILE &input) (defined in Pedigree)Pedigree
Load(const char *input, bool allowFailures=false) (defined in Pedigree)Pedigree
LoadAllele(int marker, String &label) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadAllele(MarkerInfo *info, String &label) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadAlleleFrequencies(const char *filename, bool required=false) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadAlleleFrequencies(IFILE &file) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadBasepairMap(const char *filename) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadBasepairMap(IFILE &file) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadMarkerMap(const char *filename, bool filter=false) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadMarkerMap(IFILE &file, bool filter=false) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadMendel(IFILE &input) (defined in Pedigree)Pedigree
LookupAffection(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsinlinestatic
LookupCovariate(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsinlinestatic
LookupMarker(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsinlinestatic
LookupString(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsinlinestatic
LookupTrait(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsinlinestatic
LumpAlleles(double treshold, bool reorder=true) (defined in Pedigree)Pedigree
markerCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerInfo (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerInfoByInteger (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerInfoByName (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerInfoCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerInfoSize (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerLookup (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerNames (defined in PedigreeGlobals)PedigreeGlobalsstatic
MarkerPositionsAvailable() (defined in PedigreeGlobals)PedigreeGlobalsstatic
MergeTwins() (defined in Pedigree)Pedigree
missing (defined in Pedigree)Pedigreestatic
multiFileCount (defined in Pedigree)Pedigree
multiPd (defined in Pedigree)Pedigree
operator[](int i) (defined in Pedigree)Pedigreeinline
pd (defined in Pedigree)Pedigree
Pedigree() (defined in Pedigree)Pedigree
PedigreeGlobals() (defined in PedigreeGlobals)PedigreeGlobalsinline
persons (defined in Pedigree)Pedigree
Prepare(IFILE &input) (defined in Pedigree)Pedigree
Prepare(const char *input) (defined in Pedigree)Pedigree
PrepareDichotomization() (defined in Pedigree)Pedigree
sexAsCovariate (defined in Pedigree)Pedigreestatic
SexLinkedCheck() (defined in Pedigree)Pedigree
sexSpecificMap (defined in PedigreeGlobals)PedigreeGlobalsstatic
ShowMemoryInfo() (defined in Pedigree)Pedigree
size (defined in Pedigree)Pedigree
Sort() (defined in Pedigree)Pedigree
SortMarkersInMapOrder(IntArray &markers, int chromosome=-1) (defined in PedigreeGlobals)PedigreeGlobalsstatic
stringCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
stringLookup (defined in PedigreeGlobals)PedigreeGlobalsstatic
stringNames (defined in PedigreeGlobals)PedigreeGlobalsstatic
traitCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
traitLookup (defined in PedigreeGlobals)PedigreeGlobalsstatic
traitNames (defined in PedigreeGlobals)PedigreeGlobalsstatic
TranslateSexCode(const char *code, bool &failure) (defined in Pedigree)Pedigree
Trim(bool quiet=false, int *informative=NULL) (defined in Pedigree)Pedigree
TwinCheck() (defined in Pedigree)Pedigree
VerifySexSpecificOrder() (defined in PedigreeGlobals)PedigreeGlobalsstatic
WriteDataFile(FILE *output) (defined in Pedigree)Pedigree
WriteDataFile(const char *output) (defined in Pedigree)Pedigree
WriteFreqFile(const char *filename, bool old_format=false) (defined in PedigreeGlobals)PedigreeGlobalsstatic
WriteFreqFile(FILE *file, bool old_format=false) (defined in PedigreeGlobals)PedigreeGlobalsstatic
WriteMapFile(const char *filename) (defined in PedigreeGlobals)PedigreeGlobalsstatic
WriteMapFile(FILE *file) (defined in PedigreeGlobals)PedigreeGlobalsstatic
WritePedigreeFile(FILE *output) (defined in Pedigree)Pedigree
WritePedigreeFile(const char *output) (defined in Pedigree)Pedigree
WritePerson(FILE *output, int who, const char *famid=NULL, const char *pid=NULL, const char *fatid=NULL, const char *motid=NULL) (defined in Pedigree)Pedigree
WriteRecodedPerson(FILE *output, int who, MarkerInfo **markerInfo, const char *famid=NULL, const char *pid=NULL, const char *fatid=NULL, const char *motid=NULL) (defined in Pedigree)Pedigree
~Pedigree() (defined in Pedigree)Pedigree
~PedigreeGlobals() (defined in PedigreeGlobals)PedigreeGlobals