libStatGen Software
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SamHeaderHD.cpp
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/*
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* Copyright (C) 2010 Regents of the University of Michigan
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*
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* This program is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program. If not, see <http://www.gnu.org/licenses/>.
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*/
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#include "SamHeaderHD.h"
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// Constructor
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SamHeaderHD::SamHeaderHD()
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{
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// Add required tags for this type.
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myType =
SamHeaderRecord::HD
;
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myTypeString =
"HD"
;
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addRequiredTag(
"VN"
);
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myKeyTag.clear();
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}
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// Destructor
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SamHeaderHD::~SamHeaderHD()
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{
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}
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const
char
* SamHeaderHD::getSortOrder()
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{
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return
(
getTagValue
(
"SO"
));
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}
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SamHeaderRecord
* SamHeaderHD ::createCopy()
const
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{
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SamHeaderHD
* newHD =
new
SamHeaderHD
();
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if
(newHD == NULL)
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{
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std::cerr <<
"Failed to create a copy of an HD Header Record\n"
;
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return
(NULL);
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}
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internalCopy(*newHD);
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return
(newHD);
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}
SamHeaderHD
Definition
SamHeaderHD.h:24
SamHeaderRecord
This class encapsulates the tag value pairs contained with a SAM Header line with accessors for getti...
Definition
SamHeaderRecord.h:28
SamHeaderRecord::getTagValue
const char * getTagValue(const char *tag) const
Return the value associated with the specified tag.
Definition
SamHeaderRecord.cpp:100
SamHeaderRecord::HD
@ HD
Header.
Definition
SamHeaderRecord.h:32
bam
SamHeaderHD.cpp
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