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Enclosing class:
GenotypeConcordance
protected static class GenotypeConcordance.Alleles
extends Object
A simple structure to return the results of getAlleles. NB: truthAllele1/2 and callAllele1/2 may be null if
no first or second allele was present respectively.
Field Summary
Fields
final picard.vcf.OrderedSet<String >
Constructor Summary
Constructors
Method Summary
All Methods Instance Methods Concrete Methods
List <htsjdk.variant.variantcontext.Allele>
List <htsjdk.variant.variantcontext.Allele>
List <htsjdk.variant.variantcontext.Allele>
Methods inherited from class java.lang.Object
clone , equals , finalize , getClass , hashCode , notify , notifyAll , toString , wait , wait , wait
Field Details
allAlleles
public final picard.vcf.OrderedSet<String > allAlleles
truthAllele1
public final String truthAllele1
truthAllele2
public final String truthAllele2
callAllele1
public final String callAllele1
callAllele2
public final String callAllele2
Method Details
asList
public List <htsjdk.variant.variantcontext.Allele> asList ()
truthAlleles
public List <htsjdk.variant.variantcontext.Allele> truthAlleles ()
callAlleles
public List <htsjdk.variant.variantcontext.Allele> callAlleles ()