Class Tile

java.lang.Object
picard.illumina.parser.Tile

public class Tile extends Object
Represents a tile from TileMetricsOut.bin. Stores information on location (lane invalid input: '&' tile #, density, number of clusters and the phasing/prephasing values associated with this tile
  • Constructor Details

    • Tile

      public Tile(int lane, int tile, float density, float clusters, TilePhasingValue... tilePhasingValues)
      Parameters:
      tilePhasingValues - Either one or two TilePhasingValues, corresponding to the FIRST and potentially SECOND template reads
  • Method Details

    • getLaneNumber

      public int getLaneNumber()
      Returns the number of this tile's parent lane.
    • getTileNumber

      public int getTileNumber()
      Returns the number/name of this tile.
    • getClusterDensity

      public float getClusterDensity()
      Returns the cluster density of this tile, in units of [cluster/mm^2].
    • getClusterCount

      public float getClusterCount()
      Returns the number of on this tile.
    • getPhasingMap

      public Map<TileTemplateRead,Float> getPhasingMap()
    • getPrePhasingMap

      public Map<TileTemplateRead,Float> getPrePhasingMap()