Package picard.analysis
Class GcBiasUtils
java.lang.Object
picard.analysis.GcBiasUtils
Utilities to calculate GC Bias
Created by kbergin on 9/23/15.
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic byte[]
calculateAllGcs
(byte[] refBases, int lastWindowStart, int windowSize) static int
calculateGc
(byte[] bases, int startIndex, int endIndex, picard.analysis.GcBiasUtils.CalculateGcState state) static int[]
calculateRefWindowsByGc
(int windows, File referenceSequence, int windowSize)
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Constructor Details
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GcBiasUtils
public GcBiasUtils()
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Method Details
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calculateGc
public static int calculateGc(byte[] bases, int startIndex, int endIndex, picard.analysis.GcBiasUtils.CalculateGcState state) -
calculateRefWindowsByGc
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calculateAllGcs
public static byte[] calculateAllGcs(byte[] refBases, int lastWindowStart, int windowSize)
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