Package picard.analysis
Class CollectWgsMetrics.CollectWgsMetricsIntervalArgumentCollection
java.lang.Object
picard.analysis.CollectWgsMetrics.CollectWgsMetricsIntervalArgumentCollection
- All Implemented Interfaces:
IntervalArgumentCollection
- Enclosing class:
CollectWgsMetrics
public static class CollectWgsMetrics.CollectWgsMetricsIntervalArgumentCollection
extends Object
implements IntervalArgumentCollection
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Field Summary
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Constructor Summary
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Method Summary
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Field Details
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INTERVALS
@Argument(doc="An interval list file that contains the positions to restrict the assessment. Please note that all bases of reads that overlap these intervals will be considered, even if some of those bases extend beyond the boundaries of the interval. The ideal use case for this argument is to use it to restrict the calculation to a subset of (whole) contigs.", optional=true) public File INTERVALS
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Constructor Details
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CollectWgsMetricsIntervalArgumentCollection
public CollectWgsMetricsIntervalArgumentCollection()
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Method Details
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getIntervalFile
- Specified by:
getIntervalFile
in interfaceIntervalArgumentCollection
- Returns:
- The interval file provided by the user, if any, or the default, if any.
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