Package picard.illumina.parser
Class Tile
java.lang.Object
picard.illumina.parser.Tile
Represents a tile from TileMetricsOut.bin. Stores information on location (lane invalid input: '&' tile #, density, number of clusters and the
phasing/prephasing values associated with this tile
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Constructor Summary
ConstructorsConstructorDescriptionTile
(int lane, int tile, float density, float clusters, TilePhasingValue... tilePhasingValues) -
Method Summary
Modifier and TypeMethodDescriptionfloat
Returns the number of on this tile.float
Returns the cluster density of this tile, in units of [cluster/mm^2].int
Returns the number of this tile's parent lane.int
Returns the number/name of this tile.
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Constructor Details
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Tile
public Tile(int lane, int tile, float density, float clusters, TilePhasingValue... tilePhasingValues) - Parameters:
tilePhasingValues
- Either one or two TilePhasingValues, corresponding to the FIRST and potentially SECOND template reads
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Method Details
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getLaneNumber
public int getLaneNumber()Returns the number of this tile's parent lane. -
getTileNumber
public int getTileNumber()Returns the number/name of this tile. -
getClusterDensity
public float getClusterDensity()Returns the cluster density of this tile, in units of [cluster/mm^2]. -
getClusterCount
public float getClusterCount()Returns the number of on this tile. -
getPhasingMap
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getPrePhasingMap
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