Package picard.arrays

Class VerifyIDIntensityContaminationMetrics

java.lang.Object
htsjdk.samtools.metrics.MetricBase
picard.arrays.VerifyIDIntensityContaminationMetrics

@DocumentedFeature(groupName="Metrics", summary="Metrics") public class VerifyIDIntensityContaminationMetrics extends htsjdk.samtools.metrics.MetricBase
  • Field Summary

    Fields
    Modifier and Type
    Field
    Description
    int
    The ID of this entry
    double
    The log likelihood
    double
    The log likelihood 0
    double
    The percent mixture (contamination) of the sample for ID
  • Constructor Summary

    Constructors
    Constructor
    Description
     
  • Method Summary

    Methods inherited from class htsjdk.samtools.metrics.MetricBase

    equals, hashCode, toString

    Methods inherited from class java.lang.Object

    clone, finalize, getClass, notify, notifyAll, wait, wait, wait
  • Field Details

    • ID

      public int ID
      The ID of this entry
    • PCT_MIX

      public double PCT_MIX
      The percent mixture (contamination) of the sample for ID
    • LLK

      public double LLK
      The log likelihood
    • LLK0

      public double LLK0
      The log likelihood 0
  • Constructor Details

    • VerifyIDIntensityContaminationMetrics

      public VerifyIDIntensityContaminationMetrics()