Package picard.sam.SamErrorMetric
Class ReadBaseStratification.CigarOperatorsInReadStratifier
java.lang.Object
picard.sam.SamErrorMetric.ReadBaseStratification.CigarOperatorsInReadStratifier
- All Implemented Interfaces:
ReadBaseStratification.RecordAndOffsetStratifier<Integer>
- Enclosing class:
ReadBaseStratification
Stratifies according to the number of matching cigar operators (from CIGAR string) that the read has.
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Constructor Summary
Constructors -
Method Summary
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Constructor Details
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CigarOperatorsInReadStratifier
public CigarOperatorsInReadStratifier(htsjdk.samtools.CigarOperator op)
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Method Details
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stratify
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getSuffix
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stratify
public Integer stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo) - Specified by:
stratify
in interfaceReadBaseStratification.RecordAndOffsetStratifier<T extends Comparable<T>>
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