Package picard.sam.util
Class PrimaryAlignmentKey
java.lang.Object
picard.sam.util.PrimaryAlignmentKey
- All Implemented Interfaces:
Comparable<PrimaryAlignmentKey>
It is useful to define a key such that the key will occur at most once among the primary alignments in a given file
(assuming the file is valid). The read name + pairing status should be sufficient for this.
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Constructor Summary
Constructors -
Method Summary
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Constructor Details
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PrimaryAlignmentKey
public PrimaryAlignmentKey(htsjdk.samtools.SAMRecord rec)
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Method Details
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hashCode
public int hashCode() -
equals
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compareTo
- Specified by:
compareTo
in interfaceComparable<PrimaryAlignmentKey>
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