All Classes and Interfaces
Class
Description
Implementations of this interface accept or reject Presentation Contexts from a list based on their Abstract Syntax.
A class to process multiple SR files and their referenced instances (like Images, Presentation States and Segmentations)
and build Hierarchical SOP Instance Reference Macros with which to (re-)populate CurrentRequestedProcedureEvidenceSequence.
A class for to add make a dual-personality DICOM-TIFF file and/or add Basic or Extended Offset Tables.
A concrete class specializing
Attribute for
Age String (AS) attributes.A class for extracting Analyze image input format headers.
A class for converting Analyze image input format files into images of a specified or appropriate SOP Class.
Accept only SOP Classes for storage, query or retrieval of composite instances and verification SOP Classes
with any explicit transfer syntax (whether compressed or not), also rejecting implicit VR
transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.
Accept only SOP Classes for storage of composite instances and verification SOP Classes
with any explicit transfer syntax (whether compressed or not), also rejecting implicit VR
transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.
Accept any explicit transfer syntax (whether compressed or not), also rejecting implicit VR
transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.
This class provides a description of the parameters of a known Application Entity.
A concrete class specializing
Attribute for
Application Entity (AE) attributes.This class implements a dialog for users to enter DICOM AE network configuration parameters.
This class provides a list of known Application Entities, indexed by AET.
This class provides the infrastructure for creating applications (which extend
this class) and provides them with utilities for creating a main window with a
title and default close and dispose behavior, as well as access to properties,
and a window snapshot function.
A class of static methods for copying data between arrays of different types,
expanding arrays, and comparing them, and removing padding from strings.
A factory object of static methods that can accept and initiate associations.
A specialized java.io.OutputStream which buffers and fragments
data which is written to it into PDUs and sends them over
the supplied OutputStream which is (presumably) that of the java.net.Socket
of an established
Association.This abstract class provides a mechanism for detecting when an Association closes.
A class that extends
FilterOutputStream by
creating a separate thread to actually perform the output operations, and returning
immediately from write calls, but blocking on closing.The
Attribute class is an abstract class that contains the core
functionality for storing, accessing and maintaining values of a DICOM Attribute.The
AttributeFactory class is a factory class of static methods for creating
concrete instances of the abstract class Attribute based on their
value representation.The
AttributeList class maintains a list of individual DICOM attributes.An interface to supply the criteria for prematurely terminating the reading of a DICOM file.
The abstract
AttributeListFunctionalGroupsTableModel class extends a
AttributeListTableModel to abstract the contents of a list of attributes
containing shared and per-frame functional groups for multi-frame objects as
a table in order to provide support for a AttributeListTableBrowser.The abstract
AttributeListFunctionalGroupsTableModelAllFrames class extends a
AttributeListFunctionalGroupsTableModel to abstract the contents of a list of attributes
containing shared and per-frame functional groups for multi-frame objects as
a table with a row for each frame in order to provide support for a AttributeListTableBrowser.The abstract
AttributeListFunctionalGroupsTableModelOneFrame class extends a
AttributeListFunctionalGroupsTableModel to abstract the contents of a list of attributes
containing shared and per-frame functional groups for multi-frame objects as
a table with a single row for a single frame in order to provide support for a AttributeListTableBrowser.The
AttributeListTableBrowser class implements a Swing graphical user interface
to browse the contents of an AttributeListTableModel.The
AttributeListTableModel class extends a
AbstractTableModel to abstract the contents of a list of attributes as
a single row table in order to provide support for a AttributeListTableBrowser.An individual DICOM data element (attribute) tag that
includes a group and element (each a 16 bit unsigned binary).
A concrete class specializing
Attribute for
Attribute Tag (AT) attributes.The
AttributeTree class implements a
TreeModel to abstract the contents of a list of attributes as
a tree in order to provide support for a AttributeTreeBrowser.The
AttributeTreeBrowser class implements a Swing graphical user interface
to browse the contents of an AttributeTree.Instances of the
AttributeTreeRecord class represent
nodes in a tree of the AttributeTree class, which in
turn is used by the AttributeTreeBrowser class.Various static methods helpful for converting to and from Base64 representations (e.g., for representing binary values in XML documents).
A class that extends
FilterInputStream by adding
the concept of little and big endian binary value encoding, and supplies functions
for reading various sized integer and floating point words.A class that extends
FilterOutputStream by adding
the concept of little and big endian binary value encoding, and supplies functions
for writing various sized integer and floating point words.Various static methods helpful for manipulating arrays of bytes and extracting values from them.
Various capability detection methods.
A class to process a set of multiple files and check that all referenced SOP Instances are present within the set.
This class is an entire application for displaying and viewing chest x-ray images.
An abstract class of static methods to support removing identifying attributes and adding
Clinical Trials Patient, Study and Series Modules attributes.
This class represents a concept that has a coded representation.
A class to encapsulate the attributes contained within a Sequence Item that represents
a Coded Sequence item.
A concrete class specializing
Attribute for
Code String (CS) attributes.A class to encapsulate the information related to Coding Scheme Identification encoded in composite instances within CodingSchemeIdentificationSequence.
A class to encapsulate the attributes of an Item of CodingSchemeIdentificationSequence.
A class to encapsulate patient and study information to be used for coercion of
identifiers in DICOM instances.
A class to encapsulate color palettes, including serialization and deserialization to and from standard DICOM color palette IODs.
Standard DICOM Hot Iron color palette.
Standard DICOM Hot Metal Blue color palette.
Standard DICOM PET color palette.
Standard DICOM PET 20 Step color palette.
Various static methods helpful for color conversions.
This class supports anatomic concepts that may be combinations of one another.
A class to support converting proprietary image input format files into images of a specified or appropriate SOP Class.
A class to compare two sets of DICOM files.
make a translet from any XSL-T source file.
A class for representing the attributes of general modules that describe the patient, study, series, instance
and related "context" of the payload of a composite DICOM instance.
A class to select which entities are copied or propagated or removed or not during operations on CompositeInstanceContext.
Accept only SOP Classes for storage of composite instances and verification SOP Classes.
Accept only SOP Classes for storage, query or retrieval of composite instances and verification SOP Classes.
This abstract class provides a mechanism to process each PDU of a composite response as it is received,
such as for evaluating the status of the response for success.
This class copies a set of DICOM image files, compressing them losslessly with JPEG 2000 (default), JPEG 10918-1 Lossless Huffman SV1, JPEG-LS or RLE.
The
CompressedFrameDecoder class implements decompression of selected frames
in various supported Transfer Syntaxes once already extracted from DICOM encapsulated images.The
CompressedFrameEncoder class implements compression of specified frames
in various supported Transfer Syntaxes, which can then be incorporated in DICOM encapsulated images.This class represents a concept that is uniquely identifiable.
A class of static methods to make consumer format images from DICOM images.
An abstract class for representing a node in an internal representation of a structured reporting
tree (an instance of
StructuredReport).A class with methods for constructing a
ContentItem of the appropriate class from a list of attributes.An abstract class for representing a node in an internal representation of a structured reporting
tree (an instance of
StructuredReport).An abstract class for representing a node in an internal representation of a structured reporting
tree (an instance of
StructuredReport).A class of methods to convert 8 to 16 bit gray scale images.
This class provides conversion of a set of Amicas JPEG 2000 files to DICOM.
A class of static methods to convert non-RGB (e.g., YBR_FULL) to RGB true color images.
A class of static methods to convert PALETTE COLOR to MONOCHROME2 images.
A class of static methods to convert the planar configuration of a multiple samples per pixel image, i.e., to change color-by-plane to color-by-pixel or vice versa.
A class to convert all SRT codes to SCT codes.
A class to process multiple SR files and their referenced instances (like Presentation States and Segmentations)
and copy only the head (most recent) of the Predecessor Documents sequence chain and its references, ignoring
earlier (obsolete) SR files and earlier references.
A class for copying an entire input stream to an output stream.
This class encapsulates information pertaining to anatomy of CT images.
This class provides common support to applications requiring properties related to database services.
The
DatabaseInformationModel class is an abstract class that contains the core
functionality for storing, accessing and maintaining a persistent representation of selected attributes of composite
objects.The
DatabaseTreeBrowser class implements a Swing graphical user interface
to browse the contents of DatabaseInformationModel.The
DatabaseTreeModel class implements a
TreeModel to abstract the contents of a database as
a tree in order to provide support for a DatabaseTreeBrowser.Instances of the
DatabaseTreeRecord class represent
nodes in a tree of the DatabaseTreeModel class, which in
turn is used by the DatabaseTreeBrowser class.A concrete class specializing
Attribute for
Date (DT) attributes.A concrete class specializing
Attribute for
Date Time (DT) attributes.Various static methods helpful for handling dates.
A concrete class specializing
Attribute for
Decimal String (DS) attributes.This class copies a set of DICOM files, decompressing them if compressed.
A class for constructing the default Huffman Table specified in the SCP-ECG standard.
A class to implement bulk de-identification and redaction of DICOM files.
This class provides methods for removing entries from a database, all its children and any associated
files that were copied into the database (rather than referenced).
A class to extract selected DICOM annotative attributes into defined displayed area relative positions.
This class describes the graphics environment (number and type and size of displays).
A class of static methods to provide descriptions of images, including image orientation
relative to the patient from the mathematical position and orientation attributes,
and including other descriptive attributes such as from dicom directory records and
images using multi-frame functional groups.
A class to write log and status messages to a scrolling text area in a dialog box.
The
DicomAndWebStorageServer
implements a DICOM storage server with query and retrieval as well as an HTTP server that responds
to web requests including WADO as well as an external SQL database access server.A primitive DICOMDIR browsing application that will display images and
structured reports, including marking up image coordinates and measurements on
referenced images.
This class is an application for importing or retrieving DICOM studies,
cleaning them (i.e., de-identifying them or replacing UIDs, etc.), and
sending them elsewhere.
The
DicomDatabaseInformationModel class
is an abstract class that specializes DatabaseInformationModel
by adding methods specific to a typical DICOM composite object information model.The
DicomDictionary class
is a complete standard dictionary of DICOM attributes and associated information.The
DicomDictionaryBase class
is an abstract class for creating and accessing a dictionary of DICOM
attributes and associated information.The
DicomDictionaryForMinimalPatientStudySeriesInstanceModel class
supports a simple DICOM Patient/Study/Series/Concatenation/Instance model.The
DicomDictionaryForPatientStudySeriesConcatenationInstanceModel class
supports a simple DICOM Patient/Study/Series/Concatenation/Instance model.The
DicomDictionaryForStudySeriesInstanceModel class
supports a minimal DICOM Study/Series/Instance model.Various static methods helpful for handling DICOM files.
This class displays images and allows the user to black out burned-in annotation, and save the result.
This class is an entire application for displaying and viewing images and
spectroscopy objects.
A class that extends
BinaryInputStream by adding
the concept of transfer syntaxes, for a (possible) meta information header and a data set.The
DicomInstanceValidator class is
for validating composite storage SOP instances against the standard IOD for the corresponding storage SOP Class.A class that extends
BinaryOutputStream by adding
the concept of transfer syntaxes, for a (possible) meta information header and a data set.A class that encapsulates the features and values from a DICOM ECG source,
usually for the purpose of displaying it.
The
DicomSRValidator class is
for validating SR instances against the standard IOD for the corresponding SOP Class.A class to copy DICOM attributes from anm input stream to an output stream,
converting the encoding of the attributes between transfer syntaxes if necessary.
This class contains utility methods provide for the detection of concepts in various header attributes regardless
of whether these are formal codes, code strings or free text comments.
This class represents anatomic concepts that may be encoded and displayed.
This class represents a coded concept that may be displayed, for example as a menu item in a pick list.
This class represents laterality concepts that may be encoded and displayed.
This class represents view position concepts that may be encoded and displayed.
A class to keep track of a selected sub-region of an image for the purposes of display.
A set of display shutter parameters constructed from the attributes of the DICOM Display Shutter Module.
A class to wait for incoming dose screen images and SRs and send them to pre-configured registry.
This class is an application for retrieving dose information about DICOM studies of patients.
This class is an application for retrieving DICOM studies of patients and downloading or transmitting them.
A class to provide various static methods for drawing.
Implements a component that can display an array of tiles, each of which
is a 2D graph of ECG values.
This class is an entire application for displaying and viewing DICOM and SCP ECG waveforms.
A class to create a DICOM image format file encoded in a compressed transfer syntax with the compressed bitstreams supplied from files.
A class to create a DICOM encapsulated data object from a data file and supplied metadata and/or composite context.
A class that extends
InputStream by adding
a mechanism for unencapsulating an undefined length DICOM attribute, such as is used for
compressed Pixel Data.A class for encapsulating compressed grayscale or RGB consumer image format input files (that JIIO can recognize) into DICOM images of a specified SOP Class, or single or multi frame DICOM Secondary Capture images.
Use a translet from an XSL-T source file to transform one XML file to another.
A class to extract Exposure Dose Sequence and related attributes from Philips modality dose report screen saves.
A class to abstract the contents of a file meta information header as used for a
DICOM PS 3.10 file, with additional static methods to add to and extract from an
existing list of attributes.
Various static methods helpful for handling files.
The
FilterPanel class provides a graphical user
interface for editing the string values of DICOM attributes in list.This class copies a set of DICOM files, if they match specified criteria.
This class copies a set of DICOM files, if they match specified criteria.
This class implements the SCU role of C-FIND SOP Classes.
A concrete class specializing
Attribute for
Float Double (FD) attributes.Various static methods helpful for formatting floating point values.
A concrete class specializing
Attribute for
Float Single (FL) attributes.A class to describe a set of frames sharing common characteristics suitable for display or analysis as an entity.
This class provides common support to applications requiring properties related to FTP network services.
This class provides a user interface for applications to configure and test properties related to remote FTP hosts.
A class to send files via FTP or secure FTP over TLS.
This class provides a description of the parameters of a remote FTP host.
This class implements a dialog for users to enter ftp remote host configuration parameters.
This class encapsulates information about remote FTP servers.
This class provides a description of the parameters of a remote FTP host.
A class contain useful methods for manipulating Functional Group Sequences.
A class to select which functional groups are copied or propagated or removed or not during operations on functional groups.
A class to describe the spatial geometry of a single cross-sectional image slice.
A class to extract and describe the spatial geometry of a single cross-sectional image slice, given a list of DICOM attributes.
A class to describe the spatial geometry of an entire volume of contiguous cross-sectional image slices.
A class to extract and describe the spatial geometry of an entire volume of contiguous cross-sectional image slices, given a list of DICOM attributes.
This class implements the SCU role of C-GET SOP Classes.
Various static methods helpful for dumping decimal and hexadecimal values.
A class to represent the study, series and instance identifiers necessary to retrieve a specific single image or frame in a multi-frame image using the hierarchical model.
A class to represent the study, series and instance identifiers necessary to retrieve a specific instance using the hierarchical model.
The
HttpServer class is an abstract class that implements
a minimal GET method for a web server, primarily as a basis to implement WadoServer.A class to implement Huffman decoding as used by the SCP-ECG standard.
A class to store Huffman Tables, either as read from an SCP-ECG file or the default as specified in the SCP-ECG standard.
A class to extract selected DICOM annotative attributes into defined displayed area relative positions for icons.
This class implements a panel of icons of DICOM images inside a parent JScrollPane.
This class provides a mechanism to process each identifier response of a C-FIND as it is received.
A class of utility methods for editing image pixel data.
A class to represent a non-hierarchical image reference.
A class for converting RGB consumer image format input files (anything JIIO can recognize) into DICOM images of a specified SOP Class, or single or multi frame DICOM Secondary Capture images.
A class for encoding channel parameters describing immunostaining (including antibodies, fluorescence).
A class to provide enumerated constants for the entities of the DICOM Information Model.
A class containing an application for inserting code sequences from the command line.
A class containing an application for inserting Real World Value Maps from the command line.
A class to wait for incoming composite instance storage operations and process each instance as it is received.
A class of static methods to interconvert floating point pixel data to scaled integer values.
A concrete class specializing
Attribute for
Integer String (IS) attributes.A class to encode a representation of a DICOM object in a JSON form, and to convert it back again.
A class to encode a representation of a DICOM Structured Report object in a JSON form,
suitable for analysis as human-readable text.
JTree with additional key stroke actions.
A class of static methods to copy a DICOM image and retain only enough to describe pixels.
A class to wait for incoming dose screen images, perform OCR to create Radiation Dose SRs and send RDSRs to a pre-configured DICOM destination.
An abstract class that provides the basis for posting the position of specified
slices and volumes on (usually orthogonal) localizer images.
An factory class that provides instances of
LocalizerPoster
that are used for posting the position of specified
slices and volumes on (usually orthogonal) localizer images.This class implements a thin wrapper around a subset of methods of
the
Logger class from the SLF4J facade, in order to allow
those methods commonly used by the toolkit to be usable without invoking
a runtime dependency on the SLF4J jar files.This class implements a thin wrapper around a subset of methods of
the
LoggerFactory class from the SLF4J facade, in order to allow
those methods commonly used by the toolkit to be usable without invoking
a runtime dependency on the SLF4J jar files.A concrete class specializing
Attribute for
Long String (LO) attributes.A concrete class specializing
Attribute for
Long Text (LT) attributes.A class to categorize DICOM images as having been lossy compressed or not.
A class for fetching the MAC address of one of the local host network interfaces.
A class to extract selected DICOM annotative attributes into defined displayed area relative positions for mammograms.
This class encapsulates information pertaining to breast-specific laterality as used in Mammo CAD Image Library entries.
This class is an entire application for displaying and viewing mammography images and
CAD objects.
The
MapTableBrowser class extends a
JTable to browse a list of attributes and their values
as a single row table with columns headed by the attribute descriptions (if
supplied) or their names.The
MapTableModel class extends a
AbstractTableModel to abstract the contents of a database as
a tree in order to provide support for a MapTableBrowser.This class is designed to support the importation of DICOM files from
interchange media (such as CDs and DVDs).
A class that implements
Runnable so that it can be invoked by EventQueue.invokeAndWait().A class containing an application for merging the patient composite context of multiple instances for consistency.
A class containing an application for merging the composite context of multiple instances for consistency.
A class containing an application for merging instances of a concatenation to (re-)create the source instance.
A class containing an application for merging the functional groups of multiple instances for consistency.
An interface to communicate log and status messages.
The
MinimalPatientStudySeriesInstanceModel class
supports a minimal DICOM Patient/Study/Series/Instance model.A transformation constructed from a DICOM attribute list that extracts
those attributes that define the Modality LUT transformation, specifically the
window center and width attributes.
A class that extends
InputStream to
track statistics on the transfers.A class that extends
OutputStream to
track statistics on the transfers.This class provides a main method that recursively searches the supplied paths for DICOM files
and moves them into a folder hierarchy based on their attributes.
This class implements the SCU role of C-MOVE SOP Classes.
A class to create a set of instances, which when given unenhanced ("classic") images creates
one or more enhanced multiframe image instances from them where possible, otherwise leaves them
alone but includes them in the set.
This class implements a multi-modality simulator that takes a database of
existing studies to provide a source of sample images and DICOM attributes, and
for each modality within the database, generates random new patients
and studies at random intervals using the current date and time.
This class provides user interface for network applications to configure and test properties related to DICOM network services.
This class encapsulates information about DICOM network devices.
This class encapsulates information about DICOM network devices federated from multiple sources.
This class provides common support to applications requiring properties related to DICOM network services.
This class provides utilities to automatically configure DICOM network parameters.
This class provides a dynamic registry of DICOM network parameters
possibly federated from various sources.
This abstract class provides a source of DICOM network parameters.
This class defines a number of useful defaults and constants and utilities to generate defaults.
This class is designed to support the importation of DICOM files from
interchange media (such as CDs and DVDs) and their transfer over the
network as C-STORE requests to a specified AE.
Various static methods helpful for network activities.
A class for extracting NIfTI-1 image input format headers.
A class for converting NIfTI-1 image input format files into images of a specified or appropriate SOP Class.
A class for extracting NRRD image input format headers.
A class for converting NRRD image input format files into images of a specified or appropriate SOP Class.
A class that extends
OutputStream to discard output.A class for OCR of GE and Siemens modality dose report screen saves.
An abstract class specializing
Attribute for
Other (OB or OW) attributes whose values are not memory resident.A concrete class specializing
Attribute for
Other Byte (OB) attributes.A concrete class specializing
Attribute for
Other Byte (OB) attributes whose compressed frames are not memory resident.A concrete class specializing
Attribute for
Other Byte (OB) attributes whose values are not memory resident but rather are stored in multiple compressed files on disk.A concrete class specializing
Attribute for
Other Byte (OB) attributes whose values are memory or file resident compressed pixel data frames.A concrete class specializing
Attribute for
Other Byte (OB) attributes whose values are not memory resident but rather are stored in multiple files on disk.A concrete class specializing
Attribute for
Other Byte (OB) attributes whose values are an array of bytes per frame rather than a single
contiguous array containing all frames.A concrete class specializing
Attribute for
Other Byte (OB) attributes whose values are not memory resident.A concrete class specializing
Attribute for
Other Double (OD) attributes.A concrete class specializing
Attribute for
Other Float (OF) attributes.A concrete class specializing
Attribute for
Other Float (OF) attributes whose values are not memory resident but rather are stored in multiple files on disk.A concrete class specializing
Attribute for
Other Long (OL) attributes.A concrete class specializing
Attribute for
Other Very Long (OV) attributes.A concrete class specializing
Attribute for
Other Word (OW) attributes.A concrete class specializing
Attribute for
Other Word (OW) attributes whose values are not memory resident but rather are stored in multiple files on disk.A concrete class specializing
Attribute for
Other Word (OW) attributes whose values are an array of shorts per frame rather than a single
contiguous array containing all frames.A concrete class specializing
Attribute for
Other Word (OW) attributes whose values are not memory resident.A set of bitmap overlays constructed from a DICOM attribute list.
The
PatientStudySeriesConcatenationInstanceModel class
supports a simple DICOM Patient/Study/Series/Concatenation/Instance model.A class for to encapsulate JPedal PDF decoding capability if available at runtime without requiring it for compilation.
A class for converting PDF files into a single or multi frame DICOM Secondary Capture image with one frame per page.
A class to provide support for the Person Identification Macro.
A concrete class specializing
Attribute for
Person Name (PN) attributes.A class for computing message digests of pixel data, decompressed if compressed.
An class to extract and describe pixel spacing related information.
Implements a component that can display an array of tiles, each of which
is a 2D graph of sample values.
A factory object of static methods that can create lists of presentation contexts
for initiating associations, from lists of DICOM files based on SOP Class (abstract
syntax) and supported transfer syntaxes.
Implementations of this interface accept or reject Presentation Contexts from a list based on the proposed combinations of Abstract Syntax and Transfer Syntax.
A class to write log and status messages to a
PrintStream such as System.err.This class includes standard and private mechanisms for handling float or double Pixel Data.
This class provides utilities to probe the capabilities of potential DICOM Application Entities,
used for example to maintain a cache of potential C-MOVE targets.
A class to wait for incoming composite instance storage operations
and process any single high resolution tiled whole slide image as it is received to produce a multi-resolution pyramid set of images
and send the original and the pyramid set of images to a pre-configured network remote Storage SCP AE.
This class encapsulates information pertaining to anatomy of projection x-ray images.
A class to implement bulk de-identification and pseudonymization of DICOM files with sequesteration of files that may have risk of identity leakage.
The
QueryInformationModel class is an abstract class that contains the core
functionality for performing DICOM query and retrieval over the network.This interface abstracts the communication between a query (C-FIND) server
that implements the network service, and the source of information with which
to respond to the query.
The
QueryTreeBrowser class implements a Swing graphical user interface
to browse the contents of QueryTreeModel.The
QueryTreeModel class implements a
TreeModel to abstract the contents of a query response as
a tree in order to provide support for a QueryTreeBrowser.Instances of the
QueryTreeRecord class represent
nodes in a tree of the QueryTreeModel class, which in
turn is used by the QueryTreeBrowser class.A class for extracting a JSON encoded raw input format description.
A class to read a Visible Human README file and extract the information describing the raw RGB image.
A class for converting raw RGB color single frame image input format files (such as from Visible Human) into one or more DICOM multi-frame secondary capture images.
A class that encapsulates the features and values from a raw ECG source,
usually for the purpose of displaying it.
A class for converting raw image input format files into images of a specified or appropriate SOP Class.
A transformation constructed from a DICOM attribute list that extracts
those attributes which describe how stored pixel values are translated
into real world values (e.g., Hounsfield Units, cm/s).
This class allows the reconstruction of a database from the stored instance files,
such as when the database schema model has been changed.
This abstract class provides a mechanism to process each PDU as it is received
on an association.
This abstract class provides a mechanism for performing processing on
a DICOM data set that has been completely received and stored in a file.
A class to encapsulate an SCP-ECG record header.
A class to read a set of DICOM files and replace the Frame of Reference UIDs with a common value for the specified scope.
A class to read a map of Study, Series, SOP Instance and Frame of Reference UIDs pairs, and then remap occurences in a set of DICOM files to the other member of the pair.
The
RequestTypeServer implements an HTTP server that responds
to requests of a specified type and dispatches the further
handling to a derived class corresponding to the request type.This interface abstracts the communication between a retrieve (C-MOVE) server
that implements the network service, and the source of information with which
to respond to the retrieve request.
A class containing an application for rotating and/or flipping a set of images and updating the other attributes accordingly.
A class that implements
Runnable so that it can be invoked by EventQueue.invokeLater().This class represents a concept by a combination of CodingSchemeDesignator and CodeValue.
A class to encapsulate an entire SCP-ECG object.
A class that encapsulates the features and values from an SCP ECG source,
usually for the purpose of displaying it.
The
SCPTree class implements a
TreeModel to abstract the contents of a list of attributes as
a tree in order to provide support for a SCPTreeBrowser.The
SCPTreeBrowser class implements a Swing graphical user interface
to browse the contents of an SCPTree.Instances of the
SCPTreeRecord class represent
nodes in a tree of the SCPTree class, which in
turn is used by the SCPTreeBrowser class.A class to write log and status messages to a
PrintStream such as System.err.A class to encapsulate an SCP-ECG section.
A class to encapsulate the SCP-ECG Pointers to Data Areas section.
A class to encapsulate the SCP-ECG Patient and ECG Acquisition Data section.
A class to encapsulate the SCP-ECG Lead Measurement Results section.
A class to encapsulate the SCP-ECG Huffman Tables section.
A class to encapsulate the SCP-ECG Lead Definition section.
A class to encapsulate the SCP-ECG QRS Locations section.
A class to encapsulate the SCP-ECG Encoded Reference Beat Data and Residual or Rhythm Data sections.
A class to encapsulate the SCP-ECG Global Measurements section.
A class to encapsulate the SCP-ECG Textual Diagnosis and Universal Interpretative Statement Codes sections.
A class to encapsulate the header portion of an SCP-ECG section.
A concrete class specializing
Attribute for
Sequence (SQ) attributes.A class to provide support for the contents of an individual item of a DICOM Sequence (SQ)
attribute, each of which consists of an entire dataset (list of attributes).
A class containing an application for adding or replacing top level and shared multi-frame functional group attributes from a JSON summary description.
A class to describe a set of DICOM files and their features such as SOP Class, Instance and Transfer Syntax UIDs.
A class to describe a set of frame sets, each of which shares common characteristics suitable for display or analysis as an entity.
A concrete class specializing
Attribute for
Short String (SH) attributes.A concrete class specializing
Attribute for
Short Text (ST) attributes.A class of static methods to read DICOM segmentation images, and shrink their extent to the minimum bounding box surrounding the segments.
A concrete class specializing
Attribute for
Signed Long (SL) attributes.A concrete class specializing
Attribute for
Signed Short (SS) attributes.A concrete class specializing
Attribute for
Signed Very Long (SV) attributes.Implements a component that can display a single or multi-frame image in a
single panel with window center/width adjustment, scrolling through frames
of a multi-frame image, resizing to the size of the panel, annotation
of pre-defined text and shapes, feedback of cursor position status (2D and
3D position, pixel value, window).
A single bitmap overlay plane
The abstract base class of classes that implement individual DICOM SOP Classes or
groups of SOP Classes that behave similarly (for example the composite instance
Storage SOP Classes).
A class of static methods to provide a means of describing SOP Classes with abbreviations
and hman-readable descriptions.
A class to represent a non-hierarchical instance reference.
An abstract class that encapsulates the features and values from an ECG source,
usually for the purpose of displaying it.
A class that encapsulates the pixel data and features and values from an image source
(such as a DICOM image), usually for the purpose of displaying it.
A class that encapsulates a subset of frame sin a multi-frame SourceImage.
A class that encapsulates the features and values from an MR spectroscopy source,
usually for the purpose of displaying it.
A class to encapsulate information describing references in a structured
report to images, with or without spatial coordinates.
A class to encapsulate the functionality defined by the DICOM Specific Character Set
attribute, including the ability to parse the string values of the attribute and then
apply the appropriate character conversions from byte array values into Java's internal
Unicode representation contained in
String.Implements a component that can display a single or multi-frame spectra in a
single panel, over an optional background image, with scrolling through frames
of a multi-frame spectra, resizing to the size of the panel, feedback of cursor
position status.
A class to extract and describe the spatial geometry of an MR spectroscopy localization volume, given a list of DICOM attributes.
The
StandaloneAttributeTreeBrowser class implements a Swing graphical user interface
to browse the contents of an AttributeTree using an AttributeTreeBrowser.This class implements the SCP role of SOP Classes of the Storage Service Class,
the Study Root Query Retrieve Information Model Find, Get and Move SOP Classes,
and the Verification SOP Class.
This class waits for incoming connections and association requests for
the SCP role of SOP Classes of the Storage Service Class,
the Study Root Query Retrieve Information Model Find, Get and Move SOP Classes,
and the Verification SOP Class.
This class implements the SCU role of SOP Classes of the Storage Service Class.
This class implements the SCU role of SOP Classes of the Storage Service Class.
This is an abstract class to support creating path names for how to organize the folders and files for stored composite instances based on their SOP Instance UID.
Store files in a hierarchy of folders using successive numeric components
of the SOP Instance UID as the folder name and the SOP Instance UID as the filename within the most deeply nested folder.
Store files in a hierarchy of folders using successive decimal digits of the hashcode
of the SOP Instance UID as the folder name and the SOP Instance UID as the filename within the most deeply nested folder.
Store files in a single folder, using the SOP Instance UID as the filename.
An abstract class specializing
Attribute for
the family of string attributes.An abstract class specializing
Attribute for
the family of string attributes that support different specific character sets.Various static methods helpful for comparing and manipulating strings.
The
StructuredReport class implements a
TreeModel to abstract the contents of a list of attributes
representing a DICOM Structured Report as
a tree in order to provide support for a StructuredReportBrowser.The
StructuredReportTreeBrowser class implements a Swing graphical user interface
to browse the contents of a StructuredReport.A class to wait for incoming composite instance storage operations and process when study is complete based on time since last instance received.
The
StudyRootQueryInformationModel
supports query and retrieval using the DICOM Study Root information model.The
StudySeriesInstanceModel class
supports a minimal DICOM Study/Series/Instance model.The
StudySeriesInstanceSelectiveMatchModel class
supports a minimal DICOM Study/Series/Instance model.A class that supports matching the geometry of a superimposed DICOM image
and an underlying images, and creating BufferedImages suitable for
drawing on an underlying image.
A class that supports extracting DICOM segmentation objects with one or more segments
as superimposed images.
A class that supports matching the geometry of a superimposed image
and an underlying images, and creating BufferedImages suitable for
drawing on an underlying image.
A transformation constructed from a DICOM attribute list that extracts
those attributes which describe how stored pixel values are translated
into PET SUV values.
A class for synchronizing the contents of a local database of DICOM objects with a remote SCP.
A class to private remote logging via the BSD syslog service (UDP on port 514).
A utility class with a main method to read a DICOM segmentation object and tabulate the description of the segments.
The
TagFromName class contains a selected list of
constant values for frequently used AttributeTags.A class fto test OCR against tabulated data.
This class implements the SCU role of SOP Classes of the Storage Service Class.
A class to encapsulate a text annotation positioned left or right and top or bottom with row offset relative to an abstract rectanglular frame.
An abstract class specializing
Attribute for
the family of text attributes.A class encapsulating the content of one or more TIFF or BigTIFF Image File Directories (IFDs).
A class for computing message digests of pixel data, decompressed if compressed, from TIFF files.
A class for converting TIFF files into DICOM images of a specified or appropriate SOP Class.
The
TiledFramesIndex class ...Take a single high resolution tiled image and downsample it by successive factors of two to produce a multi-resolution pyramid set of images.
A concrete class specializing
Attribute for
Time (TM) attributes.A class that extends
FilterOutputStream to
track statistics on the transfers.A class to represent the characteristics of a DICOM Transfer Syntax, which may
be instantiated from a UID or from basic characteristics, as well as static
UID strings for known Transfer Syntaxes, and static methods for extracting
the characteristics of known Transfer Syntaxes.
A class to lookup the DICOM Transfer Syntax UID from a string name.
Concrete sub-classes of this abstract class accept or reject Presentation Contexts from a list based on their Transfer Syntax.
A class to read a set of DICOM files and translate the Image Position (Patient) by a fixed offset.
A class for generating new UIDs, deterministically or not, including potentially reproducible Study, Series and SOP Instance UIDs.
A class to identify duplicate images based on having the same pixel data hash and constructing collections of their duplicate Study, Series, SOP Instance and Frame of Reference UIDs.
A class to read a DICOM image input format file encoded in a compressed transfer syntax and extract the compressed bitstreams into a file for each frame.
A class to extract the content of a DICOM encapsulated data object into a file.
Accept only SOP Classes for storage, query or retrieval of composite instances and verification SOP Classes
with uncompressed or deflated or bzip but not encapsulated compressed transfer syntaxes, also rejecting implicit VR
transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.
Accept only SOP Classes for storage of composite instances and verification SOP Classes
with uncompressed or deflated or bzip but not encapsulated compressed transfer syntaxes, also rejecting implicit VR
transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.
Accept only uncompressed or deflated or bzip but not encapsulated compressed transfer syntaxes, also rejecting implicit VR
transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.
A concrete class specializing
Attribute for
Unique Identifier (UI) attributes.A concrete class specializing
Attribute for
Unviversal Resource (UR) attributes.A concrete class specializing
Attribute for
Unknown (UN) attributes.A concrete class specializing
Attribute for
Unlimited Characters (UC) attributes.A concrete class specializing
Attribute for
Unlimited Text (UT) attributes.A concrete class specializing
Attribute for
Unsigned Long (UL) attributes.A concrete class specializing
Attribute for
Unsigned Short (US) attributes.A concrete class specializing
Attribute for
Unsigned Very Long (UV) attributes.A class for creating and convertin UUID based OIDs.
Utilities to support the concept of the DICOM Value Representation (VR), including
two byte arrays for each VR, and tester methods that determine whether or not a
particular two byte array is a particular type of VR.
This class implements the SCU role of the Verification SOP Class.
Various pre-defined constants for identifying this software.
A class of static methods for handling veterinary (animal) data.
A transformation constructed from a DICOM attribute list that extracts
those attributes that define the VOI LUT transformation, specifically the
window center and width attributes.
The
WadoRequest class parses a DICOM PS 3.18 (ISO 17432),
WADO URL into its constituent query parameters.The
WadoServer implements an HTTP server that responds to WADO GET requests
as defined by DICOM PS 3.18 (ISO 17432), which provides a standard web (http) interface through which to retrieve DICOM objects either
as DICOM files or as derived JPEG images.A class for watching a folder and sending any DICOM files that appear to a pre-configured network remote Storage SCP AE.
The
WebRequest class parses a URL
that contains a requestType parameter and additional query parameters.This class provides common support to applications requiring properties related to web services.
A class of static methods to perform window operations on images.
A class to encode a representation of a DICOM object in an XML form,
suitable for analysis as human-readable text, or for feeding into an
XSLT-based validator, and to convert them back again.
A class to encode a representation of a DICOM Structured Report object in an XML form,
suitable for analysis as human-readable text, or for feeding into an
XSLT-based validator.
The
XPathQuery class provides
a command line utility for performing XPath queries against an XML file.