Constant Field Values

Contents

org.snpeff.*

  • org.snpeff.codons.CodonTable
    Modifier and Type
    Constant Field
    Value
    public static final String
    "M"
    public static final String
    "Ter"
    public static final String
    "*"
  • org.snpeff.codons.CodonTables
    Modifier and Type
    Constant Field
    Value
    public static final String
    "TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G"
    public static final String
    "Standard"
  • org.snpeff.codons.FindRareAaIntervals
    Modifier and Type
    Constant Field
    Value
    public static final double
    1.0E-5
  • org.snpeff.fastq.FastqSplit
    Modifier and Type
    Constant Field
    Value
    public static final int
    10485760
    public static final long
    1073741824L
    public static final long
    1024L
    public static final long
    1048576L
    public static final long
    1125899906842624L
    public static final long
    1099511627776L
  • org.snpeff.gtex.Gtex
    Modifier and Type
    Constant Field
    Value
    public static final String
    "NA"
  • org.snpeff.interval.codonChange.CodonChange
    Modifier and Type
    Constant Field
    Value
    public static final int
    3
  • org.snpeff.motif.Pwm
    Modifier and Type
    Constant Field
    Value
    public static final int
    100
  • org.snpeff.nmer.Nmer
    Modifier and Type
    Constant Field
    Value
    public static final int
    32
  • org.snpeff.reactome.events.Reaction
    Modifier and Type
    Constant Field
    Value
    public static final double
    1.1
  • org.snpeff.util.Download
    Modifier and Type
    Constant Field
    Value
    public static final int
    80
  • org.snpeff.util.Gpr
    Modifier and Type
    Constant Field
    Value
    public static final long
    1073741824L
    public static final long
    1024L
    public static final long
    1048576L
    public static final long
    1099511627776L
  • org.snpeff.util.GprSeq
    Modifier and Type
    Constant Field
    Value
    public static final char
    '!'
    public static final byte
    0xff
  • org.snpeff.util.IubString
    Modifier and Type
    Constant Field
    Value
    public static final int
    10
  • org.snpeff.util.Log
    Modifier and Type
    Constant Field
    Value
    public static final int
    10
    public static final int
    25