Package org.snpeff.pdb
Class PdbUtil
java.lang.Object
org.snpeff.pdb.PdbUtil
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic List
<org.biojava.nbio.structure.AminoAcid> aminoAcids
(org.biojava.nbio.structure.Chain chain) Get all AAs in a chainstatic double
distanceMin
(org.biojava.nbio.structure.AminoAcid aa1, org.biojava.nbio.structure.AminoAcid aa2) Minimum distance between all atoms in two amino acids
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Constructor Details
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PdbUtil
public PdbUtil()
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Method Details
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aminoAcids
public static List<org.biojava.nbio.structure.AminoAcid> aminoAcids(org.biojava.nbio.structure.Chain chain) Get all AAs in a chain -
distanceMin
public static double distanceMin(org.biojava.nbio.structure.AminoAcid aa1, org.biojava.nbio.structure.AminoAcid aa2) Minimum distance between all atoms in two amino acids
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