Package org.snpeff.interval.codonChange
Class CodonChangeIns
java.lang.Object
org.snpeff.interval.codonChange.CodonChange
org.snpeff.interval.codonChange.CodonChangeIns
Calculate codon changes produced by an insertion
- Author:
- pcingola
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Field Summary
Fields inherited from class org.snpeff.interval.codonChange.CodonChange
CODON_SIZE, showCodonChange
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Constructor Summary
ConstructorsConstructorDescriptionCodonChangeIns
(Variant variant, Transcript transcript, VariantEffects changeEffects) -
Method Summary
Modifier and TypeMethodDescriptionprotected boolean
codonChange
(Exon exon) Analyze insertions in this transcript.protected String
Get new (modified) codonsMethods inherited from class org.snpeff.interval.codonChange.CodonChange
additionalEffect, cdsBaseNumber, codonChange, codonsRef, codonsRef, effect, effectNoCodon, effectNoCodon, factory, intersectsExons, netCdsChange, toString
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Constructor Details
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CodonChangeIns
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Method Details
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codonChange
Analyze insertions in this transcript. Add changeEffect to 'changeEffect'- Overrides:
codonChange
in classCodonChange
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codonsAlt
Get new (modified) codons- Overrides:
codonsAlt
in classCodonChange
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