Package org.snpsift.testCases
Class TestCasesZzz
java.lang.Object
org.snpsift.testCases.TestCasesZzz
Try test cases in this class before adding them to long test cases
- Author:
- pcingola
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Field Summary
FieldsModifier and TypeFieldDescriptionstatic boolean
protected String[]
protected boolean
static boolean
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionList
<org.snpeff.vcf.VcfEntry> AnnotateannotateOut
(String dbFileName, String fileName, String[] extraArgs) Annotate and return STDOUT as a stringvoid
annotateTest
(String dbFileName, String fileName) void
annotateTest
(String dbFileName, String fileName, String[] extraArgs) Annotate a file and check that the new annotation matches the expected oneprotected String[]
void
test_45()
Annotate GnomAd with multiple entries
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Field Details
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debug
public static boolean debug -
verbose
public static boolean verbose -
defaultExtraArgs
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deleteIndexFile
protected boolean deleteIndexFile
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Constructor Details
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TestCasesZzz
public TestCasesZzz()
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Method Details
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annotate
public List<org.snpeff.vcf.VcfEntry> annotate(String dbFileName, String fileName, String[] extraArgs) Annotate -
annotateOut
Annotate and return STDOUT as a string -
annotateTest
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annotateTest
Annotate a file and check that the new annotation matches the expected one -
argsList
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test_45
public void test_45()Annotate GnomAd with multiple entries
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