Uses of Class
org.snpsift.annotate.QueryResult
Packages that use QueryResult
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Uses of QueryResult in org.snpsift.annotate
Methods in org.snpsift.annotate with parameters of type QueryResultModifier and TypeMethodDescriptionprotected boolean
AnnotateVcfDb.findDbExists
(QueryResult qr) Should we annotate using 'exists' field?protected void
AnnotateVcfDb.findDbId
(Set<String> idSet, QueryResult qr) Find an ID for this variant and add them to idSetprotected String
AnnotateVcfDb.findDbInfo
(String infoFieldName, QueryResult qr) Find all non-empty INFO fields 'infoFieldName' in resultsprotected void
AnnotateVcfDb.findDbInfo
(Map<String, String> info, QueryResult qr) Find INFO fields for this VCF entryprotected String
AnnotateVcfDb.findDbInfoAlt
(String infoFieldName, QueryResult qr) Find the first non-empty INFO field 'infoFieldName' in results Note: ALT must match