Package org.snpsift.testCases.unit
package org.snpsift.testCases.unit
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ClassesClassDescriptionAnnotate test caseAnnotate test case Deletes index files to make sure they are properly builtAnnotate test caseAnnotate test case using TABIX indexed filesAnnotate test case Uses the index files created during the execution of TestCasesAnnotateCreateIndex test suiteCase control test casesConcordance test casesTest cases for dbNSFP database annotations Note: This class tries to use 'data type cache' filesTest cases for dbNSFP database annotations Note: This class deletes and re-builds 'data type cache' filesExtract fields test casesFilter test casesFilter test cases for 'ALL' indexTest cases for SnpSift filterChrPosFilter test cases for 'GT Filter'SnpSift 'gt' test casesSnpSift 'gt' test casesTest GWAS catalog classesHWE test casesAnnotate test caseSnpSIft intervalsLinkage disequilibrium test casesSnpSift 'private' test casesSnpSift 'split' test casesSnpSift 'split' test casesVarType test casesVarType test cases