Class FieldEff


public class FieldEff extends FieldSub
An 'EFF' field form SnpEff: E.g.: 'EFF[2].GENE'
Author:
pablocingolani
  • Constructor Details

    • FieldEff

      public FieldEff(String name, Expression idxExpr, org.snpeff.vcf.EffFormatVersion formatVersion, String fieldName)
      Constructor
      Parameters:
      formatVersion - : Can be null (it will be guessed)
  • Method Details

    • getFieldString

      public String getFieldString(org.snpeff.vcf.VcfEntry vcfEntry)
      Get a field from VcfEntry
      Overrides:
      getFieldString in class FieldSub
    • getName

      public String getName()
      Overrides:
      getName in class Field
    • getReturnType

      public org.snpeff.vcf.VcfInfoType getReturnType(org.snpeff.vcf.VcfEntry vcfEntry)
    • toString

      public String toString()
      Overrides:
      toString in class FieldSub