Class AnnotateVcfDbSorted

java.lang.Object
org.snpsift.annotate.AnnotateVcfDb
org.snpsift.annotate.AnnotateVcfDbSorted

public class AnnotateVcfDbSorted extends AnnotateVcfDb
Annotate using a VCF "database" Note: Assumes that the VCF database file is sorted. Each VCF entry should be sorted according to position. Chromosome order does not matter (e.g. all entries for chr10 can be before entries for chr2). But entries for the same chromosome should be together.
Author:
pcingola
  • Constructor Details

    • AnnotateVcfDbSorted

      public AnnotateVcfDbSorted(String dbFileName, int maxBlockSize)