Package org.snpsift.gwasCatalog
Class GwasCatalog
java.lang.Object
org.snpsift.gwasCatalog.GwasCatalog
- All Implemented Interfaces:
Iterable<GwasCatalogEntry>
GWAS catalog table.
It is small enough to fit in memory
Refernces:
http://www.genome.gov/gwastudies/
- Author:
- pablocingolani
-
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionGet all entries at a given chromosome invalid input: '&' position Note: Position is zero based.Get an entry based on 'RS' numberiterator()
Create a 'key' stringkey
(GwasCatalogEntry ge) Create a 'key' stringprotected void
Load data from fileMethods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface java.lang.Iterable
forEach, spliterator
-
Constructor Details
-
GwasCatalog
-
-
Method Details
-
get
-
get
Get all entries at a given chromosome invalid input: '&' position Note: Position is zero based. -
getByRs
Get an entry based on 'RS' number -
iterator
- Specified by:
iterator
in interfaceIterable<GwasCatalogEntry>
-
key
Create a 'key' string -
key
Create a 'key' string -
load
Load data from file
-