Package org.snpsift.lang.expression
Class FieldGenotypeSub
java.lang.Object
org.snpsift.lang.expression.Expression
org.snpsift.lang.expression.Field
org.snpsift.lang.expression.FieldSub
org.snpsift.lang.expression.FieldGenotype
org.snpsift.lang.expression.FieldGenotypeSub
A field:
E.g.: 'GEN[2].PL[3]'
- Author:
- pablocingolani
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Field Summary
Fields inherited from class org.snpsift.lang.expression.Field
exceptionIfNotFound, name, number, returnType, TYPE_ALL, TYPE_ANY, vcfInfo, vcfInfoNumber
Fields inherited from class org.snpsift.lang.expression.Expression
debug, negated, operator
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptiongetFieldString
(org.snpeff.vcf.VcfEntry vcfEntry) Get a field from VcfEntrygetFieldString
(org.snpeff.vcf.VcfGenotype vcfGenotype) Get a field from VcfGenotypeprotected boolean
isSub()
toString()
Methods inherited from class org.snpsift.lang.expression.FieldGenotype
evalGenotype
Methods inherited from class org.snpsift.lang.expression.FieldSub
evalIndex, evalIndex, evalIndex, evalIndex
Methods inherited from class org.snpsift.lang.expression.Field
eval, eval, fieldHeaderNotFound, fieldNotFound, getName, getReturnType, getSampleNum, gtFieldNotFound, indexStr, isSampleName, returnType, returnType, setExceptionIfNotFound
Methods inherited from class org.snpsift.lang.expression.Expression
setNegated
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Constructor Details
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FieldGenotypeSub
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Method Details
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getFieldString
Get a field from VcfEntry- Overrides:
getFieldString
in classFieldGenotype
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getFieldString
Get a field from VcfGenotype- Overrides:
getFieldString
in classFieldGenotype
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isSub
protected boolean isSub()- Overrides:
isSub
in classFieldGenotype
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toString
- Overrides:
toString
in classFieldGenotype
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