Class TestCasesZzz

java.lang.Object
org.snpsift.testCases.TestCasesZzz

public class TestCasesZzz extends Object
Try test cases in this class before adding them to long test cases
Author:
pcingola
  • Field Details

    • debug

      public static boolean debug
    • verbose

      public static boolean verbose
    • defaultExtraArgs

      protected String[] defaultExtraArgs
    • deleteIndexFile

      protected boolean deleteIndexFile
  • Constructor Details

    • TestCasesZzz

      public TestCasesZzz()
  • Method Details

    • annotate

      public List<org.snpeff.vcf.VcfEntry> annotate(String dbFileName, String fileName, String[] extraArgs)
      Annotate
    • annotateOut

      public String annotateOut(String dbFileName, String fileName, String[] extraArgs)
      Annotate and return STDOUT as a string
    • annotateTest

      public void annotateTest(String dbFileName, String fileName)
    • annotateTest

      public void annotateTest(String dbFileName, String fileName, String[] extraArgs)
      Annotate a file and check that the new annotation matches the expected one
    • argsList

      protected String[] argsList(String dbFileName, String fileName, String[] extraArgs)
    • test_45

      public void test_45()
      Annotate GnomAd with multiple entries