Class TestCasesCaseControl

java.lang.Object
org.snpsift.testCases.unit.TestCasesCaseControl

public class TestCasesCaseControl extends Object
Case control test cases
Author:
pcingola
  • Field Details

    • verbose

      public static boolean verbose
    • debug

      public static boolean debug
  • Constructor Details

    • TestCasesCaseControl

      public TestCasesCaseControl()
  • Method Details

    • test_01

      public void test_01()
    • test_01_Str

      public void test_01_Str()
    • test_02

      public void test_02()
    • test_02_Str

      public void test_02_Str()
    • test_02_Str2

      public void test_02_Str2()
    • test_03

      public void test_03()
    • test_03_Str

      public void test_03_Str()
    • test_03_Str2

      public void test_03_Str2()
    • test_03_Str3

      public void test_03_Str3()
    • test_04

      public void test_04()
    • test_04_Str

      public void test_04_Str()
    • test_05

      public void test_05()
    • test_06

      public void test_06()
    • test_07

      public void test_07()
    • test_08

      public void test_08()
    • test_09

      public void test_09()
      Compare to results from PLINK using ChiSquare approximation
    • test_10

      public void test_10()
      Compare to results from PLINK using Fisher exact test

      Note: I use the rule of the thumb that Fisher exact test should be below 2 times Chi^2 estimation. This rule seems to work, at least for p-values in this example, which are between 10^-15 and 0.9