Package org.snpsift.lang.expression
Class FieldLof
java.lang.Object
org.snpsift.lang.expression.Expression
org.snpsift.lang.expression.Field
org.snpsift.lang.expression.FieldSub
org.snpsift.lang.expression.FieldLof
- Direct Known Subclasses:
FieldNmd
A LOF field form SnpEff:
E.g.: 'LOF[2].GENE'
- Author:
- pablocingolani
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Field Summary
Fields inherited from class org.snpsift.lang.expression.Field
exceptionIfNotFound, name, number, returnType, TYPE_ALL, TYPE_ANY, vcfInfo, vcfInfoNumber
Fields inherited from class org.snpsift.lang.expression.Expression
debug, negated, operator
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptiongetFieldString
(org.snpeff.vcf.VcfEntry vcfEntry) Get a field from VcfEntrygetName()
org.snpeff.vcf.VcfInfoType
getReturnType
(org.snpeff.vcf.VcfEntry vcfEntry) protected void
init()
toString()
Methods inherited from class org.snpsift.lang.expression.FieldSub
evalIndex, evalIndex, evalIndex, evalIndex, getFieldString, isSub
Methods inherited from class org.snpsift.lang.expression.Field
eval, eval, fieldHeaderNotFound, fieldNotFound, getReturnType, getSampleNum, gtFieldNotFound, indexStr, isSampleName, returnType, returnType, setExceptionIfNotFound
Methods inherited from class org.snpsift.lang.expression.Expression
setNegated
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Constructor Details
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FieldLof
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Method Details