Package org.snpsift

Class SnpSiftCmdPedShow

java.lang.Object
org.snpsift.SnpSift
org.snpsift.SnpSiftCmdPedShow
All Implemented Interfaces:
org.snpeff.snpEffect.commandLine.CommandLine, org.snpeff.snpEffect.VcfAnnotator

public class SnpSiftCmdPedShow extends SnpSift
Draws a pedigree using SVG according to a VCF file
Author:
pablocingolani
  • Constructor Details

    • SnpSiftCmdPedShow

      public SnpSiftCmdPedShow()
    • SnpSiftCmdPedShow

      public SnpSiftCmdPedShow(String[] args)
  • Method Details

    • parseArgs

      public void parseArgs(String[] args)
      Description copied from class: SnpSift
      Parse command line arguments
      Specified by:
      parseArgs in interface org.snpeff.snpEffect.commandLine.CommandLine
      Overrides:
      parseArgs in class SnpSift
    • run

      public boolean run()
      Run: Main method
      Specified by:
      run in interface org.snpeff.snpEffect.commandLine.CommandLine
      Overrides:
      run in class SnpSift
      Parameters:
      tfamFile -
      vcfFileName -
      outputDir -
      chrPos -
    • usage

      public void usage(String msg)
      Description copied from class: SnpSift
      Show usage message
      Specified by:
      usage in interface org.snpeff.snpEffect.commandLine.CommandLine
      Overrides:
      usage in class SnpSift