Class TestCasesFilterChrPos

java.lang.Object
org.snpsift.testCases.unit.TestCasesFilterChrPos

public class TestCasesFilterChrPos extends Object
Test cases for SnpSift filterChrPos
Author:
pcingola
  • Field Details

    • debug

      public static boolean debug
    • verbose

      public static boolean verbose
    • defaultExtraArgs

      protected String[] defaultExtraArgs
  • Constructor Details

    • TestCasesFilterChrPos

      public TestCasesFilterChrPos()
  • Method Details

    • argsList

      protected String[] argsList(String chrPosFileName, String vcfFileName, String[] extraArgs)
    • filter

      public void filter(String dbFileName, String fileName, int expectedCount)
    • filter

      public List<org.snpeff.vcf.VcfEntry> filter(String chrPosFileName, String vcfFileName, String[] extraArgs, int expectedCount)
      Filter
    • test_01

      public void test_01()
    • test_02

      public void test_02()
    • test_03

      public void test_03()