Package org.snpsift.annotate
Class DbVcfTabix
java.lang.Object
org.snpsift.annotate.DbVcf
org.snpsift.annotate.DbVcfTabix
- All Implemented Interfaces:
DbMarker<org.snpeff.interval.Variant,
org.snpeff.vcf.VariantVcfEntry>
Use a bgzip-compressed, tabix indexed VCF file as a database for annotations
- Author:
- pcingola
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Field Summary
FieldsModifier and TypeFieldDescriptionprotected String
protected htsjdk.tribble.readers.TabixReader
protected org.snpeff.fileIterator.VcfFileIterator
Fields inherited from class org.snpsift.annotate.DbVcf
dbFileName, debug, vcfHeader, verbose
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.snpsift.annotate.DbVcf
getVcfHeader, setDebug, setVerbose
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Field Details
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tabixReader
protected htsjdk.tribble.readers.TabixReader tabixReader -
vcf
protected org.snpeff.fileIterator.VcfFileIterator vcf -
chrPrepend
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Constructor Details
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DbVcfTabix
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Method Details