Package org.snpsift.testCases.unit
Class TestCasesCaseControl
java.lang.Object
org.snpsift.testCases.unit.TestCasesCaseControl
Case control test cases
- Author:
- pcingola
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Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
test_01()
void
void
test_02()
void
void
void
test_03()
void
void
void
void
test_04()
void
void
test_05()
void
test_06()
void
test_07()
void
test_08()
void
test_09()
Compare to results from PLINK using ChiSquare approximationvoid
test_10()
Compare to results from PLINK using Fisher exact test
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Field Details
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verbose
public static boolean verbose -
debug
public static boolean debug
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Constructor Details
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TestCasesCaseControl
public TestCasesCaseControl()
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Method Details
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test_01
public void test_01() -
test_01_Str
public void test_01_Str() -
test_02
public void test_02() -
test_02_Str
public void test_02_Str() -
test_02_Str2
public void test_02_Str2() -
test_03
public void test_03() -
test_03_Str
public void test_03_Str() -
test_03_Str2
public void test_03_Str2() -
test_03_Str3
public void test_03_Str3() -
test_04
public void test_04() -
test_04_Str
public void test_04_Str() -
test_05
public void test_05() -
test_06
public void test_06() -
test_07
public void test_07() -
test_08
public void test_08() -
test_09
public void test_09()Compare to results from PLINK using ChiSquare approximation -
test_10
public void test_10()Compare to results from PLINK using Fisher exact testNote: I use the rule of the thumb that Fisher exact test should be below 2 times Chi^2 estimation. This rule seems to work, at least for p-values in this example, which are between 10^-15 and 0.9
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