Package org.snpsift.annotate
Class AnnotateVcfDbTabix
java.lang.Object
org.snpsift.annotate.AnnotateVcfDb
org.snpsift.annotate.AnnotateVcfDbTabix
Annotate using a tabix indexed VCF "database"
- Author:
- pcingola
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Field Summary
Fields inherited from class org.snpsift.annotate.AnnotateVcfDb
annotateEmpty, chrPrev, dbVcf, debug, errCount, existsInfoField, hasVcfInfoPerAlleleRef, infoFields, MAX_ERRORS, prependInfoFieldName, useAllInfoFields, useId, useInfoFields, useRefAlt, vcfDbFile, vcfInfoPerAllele, vcfInfoPerAlleleRef, verbose
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.snpsift.annotate.AnnotateVcfDb
annotate, annotateExists, annotateIds, annotateInfo, close, discoverInfoFields, discoverInfoFields, find, find, findDbExists, findDbId, findDbInfo, findDbInfo, findDbInfoAlt, findDbInfoRef, match, open, prependInfoName, query, setAnnotateEmpty, setDebug, setExistsInfoField, setInfoFields, setPrependInfoFieldName, setUseId, setUseRefAlt, setVerbose, toString, uniqueIds, warn
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Constructor Details
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AnnotateVcfDbTabix
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