Class GwasCatalogEntry

java.lang.Object
org.snpsift.gwasCatalog.GwasCatalogEntry

public class GwasCatalogEntry extends Object
Entry from a GWAS-catalog References: http://www.genome.gov/gwastudies/#download http://www.genome.gov/Pages/About/OD/OPG/GWAS%20Catalog/Tab_delimited_column_descriptions_09_27.pdf
Author:
pablocingolani
  • Field Details

    • dateAddedtoCatalog

      public String dateAddedtoCatalog
    • pubmedId

      public String pubmedId
    • firstAuthor

      public String firstAuthor
    • date

      public String date
    • journal

      public String journal
    • study

      public String study
    • trait

      public String trait
    • initialSampleSize

      public String initialSampleSize
    • replicationSampleSize

      public String replicationSampleSize
    • region

      public String region
    • chrId

      public String chrId
    • chrPos

      public int chrPos
    • reportedGene

      public String reportedGene
    • mappedGene

      public String mappedGene
    • upstreamGeneId

      public String upstreamGeneId
    • downstreamGeneId

      public String downstreamGeneId
    • snpGeneIds

      public String snpGeneIds
    • upstreamGeneDistance

      public String upstreamGeneDistance
    • downstreamGeneDistance

      public String downstreamGeneDistance
    • riskAllele

      public String riskAllele
    • snps

      public String snps
    • merged

      public String merged
    • snpIdCurrent

      public String snpIdCurrent
    • context

      public String context
    • intergenic

      public String intergenic
    • riskAlleleFrequency

      public String riskAlleleFrequency
    • pValue

      public double pValue
    • pValueMlog

      public String pValueMlog
    • pValueText

      public String pValueText
    • orBeta

      public String orBeta
    • ci95

      public String ci95
    • platform

      public String platform
    • cnv

      public String cnv
    • mappedTrait

      public String mappedTrait
    • mappedTraitUri

      public String mappedTraitUri
  • Constructor Details

    • GwasCatalogEntry

      public GwasCatalogEntry()
  • Method Details

    • getTraitCode

      public String getTraitCode()
      Trait as a 'code' (only alpha-num chars)
    • toString

      public String toString()
      Overrides:
      toString in class Object