Package org.snpsift.gwasCatalog
Class GwasCatalogEntry
java.lang.Object
org.snpsift.gwasCatalog.GwasCatalogEntry
Entry from a GWAS-catalog
References:
http://www.genome.gov/gwastudies/#download
http://www.genome.gov/Pages/About/OD/OPG/GWAS%20Catalog/Tab_delimited_column_descriptions_09_27.pdf
- Author:
- pablocingolani
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Field Summary
FieldsModifier and TypeFieldDescriptionint
double
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Constructor Summary
Constructors -
Method Summary
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Field Details
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dateAddedtoCatalog
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pubmedId
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firstAuthor
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date
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journal
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link
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study
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trait
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initialSampleSize
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replicationSampleSize
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region
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chrId
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chrPos
public int chrPos -
reportedGene
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mappedGene
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upstreamGeneId
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downstreamGeneId
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snpGeneIds
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upstreamGeneDistance
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downstreamGeneDistance
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riskAllele
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snps
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merged
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snpIdCurrent
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context
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intergenic
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riskAlleleFrequency
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pValue
public double pValue -
pValueMlog
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pValueText
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orBeta
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ci95
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platform
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cnv
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mappedTrait
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mappedTraitUri
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Constructor Details
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GwasCatalogEntry
public GwasCatalogEntry()
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Method Details