Package org.snpsift.gwasCatalog
Class GwasCatalogFileIterator
java.lang.Object
org.snpeff.fileIterator.FileIterator<GwasCatalogEntry>
org.snpeff.fileIterator.LineClassFileIterator<GwasCatalogEntry>
org.snpsift.gwasCatalog.GwasCatalogFileIterator
- All Implemented Interfaces:
Iterable<GwasCatalogEntry>
,Iterator<GwasCatalogEntry>
public class GwasCatalogFileIterator
extends org.snpeff.fileIterator.LineClassFileIterator<GwasCatalogEntry>
Iterate on each line of a GWAS catalog (TXT, tab separated format)
- Author:
- pcingola
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Field Summary
Fields inherited from class org.snpeff.fileIterator.LineClassFileIterator
clazz, debug, FIELD_NAME_SEPARATOR, fieldByName, fieldNames, fieldStr, separator
Fields inherited from class org.snpeff.fileIterator.FileIterator
autoClose, countNewLineChars, fileName, fileSize, line, lineNum, next, nextLine, reader, verbose
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.snpeff.fileIterator.LineClassFileIterator
createObject, fieldMap, iterator, readNext, setSeparator
Methods inherited from class org.snpeff.fileIterator.FileIterator
close, countNewLineChars, getFilePointer, getLine, getLineNum, guessNewLineChars, hasNext, hasSeek, init, isDebug, load, next, readLine, ready, remove, seek, setAutoClose, setDebug, setVerbose, toString
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
Methods inherited from interface java.lang.Iterable
forEach, spliterator
Methods inherited from interface java.util.Iterator
forEachRemaining
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Constructor Details
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GwasCatalogFileIterator
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