protected class CeCPUserArgumentProcessor.CeCPStartupParams extends CeUserArgumentProcessor.CeStartupParams
Modifier and Type | Field and Description |
---|---|
protected CECPParameters.DuplicationHint |
duplicationHint |
protected java.lang.Integer |
minCPLength |
gapExtension, gapOpen, maxGapSize, maxOptRMSD, scoringStrategy, showAFPRanges, winSize
Constructor and Description |
---|
CeCPUserArgumentProcessor.CeCPStartupParams() |
Modifier and Type | Method and Description |
---|---|
CECPParameters.DuplicationHint |
getDuplicationHint() |
java.lang.Integer |
getMinCPLength() |
void |
setDuplicationHint(CECPParameters.DuplicationHint duplicationHint) |
void |
setMinCPLength(java.lang.Integer minCPLength) |
java.lang.String |
toString() |
getGapExtension, getGapOpen, getMaxGapSize, getMaxOptRMSD, getScoringStrategy, getWinSize, isShowAFPRanges, setGapExtension, setGapOpen, setMaxGapSize, setMaxOptRMSD, setScoringStrategy, setShowAFPRanges, setWinSize
getAlignPairs, getCacheFilePath, getFile1, getFile2, getNrCPU, getOutFile, getPdb1, getPdb2, getPdbFilePath, getSaveOutputDir, getSearchFile, getShowDBresult, isAutoFetch, isDomainSplit, isOutputPDB, isPdbDirSplit, isPrintCE, isPrintFatCat, isPrintXML, isShow3d, isShowMenu, setAlignPairs, setAutoFetch, setCacheFilePath, setDomainSplit, setFile1, setFile2, setNrCPU, setOutFile, setOutputPDB, setPdb1, setPdb2, setPdbDirSplit, setPdbFilePath, setPrintCE, setPrintFatCat, setPrintXML, setSaveOutputDir, setSearchFile, setShow3d, setShowDBresult, setShowMenu
protected CECPParameters.DuplicationHint duplicationHint
protected java.lang.Integer minCPLength
public CeCPUserArgumentProcessor.CeCPStartupParams()
public CECPParameters.DuplicationHint getDuplicationHint()
public void setDuplicationHint(CECPParameters.DuplicationHint duplicationHint)
public java.lang.Integer getMinCPLength()
public void setMinCPLength(java.lang.Integer minCPLength)
public java.lang.String toString()
toString
in class CeUserArgumentProcessor.CeStartupParams