Clustal Omega 1.2.4
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Go to the source code of this file.
Typedefs | |
typedef enum linkage_e | linkage_t |
Enumerations | |
enum | linkage_e { LINKAGE_MIN , LINKAGE_AVG , LINKAGE_MAX , LINKAGE_NEIGHBORJOINING , LINKAGE_BIASED } |
Functions | |
void | MuscleUpgma2 (tree_t *tree, symmatrix_t *distmat, linkage_t linkage, char **names) |
Creates a UPGMA in O(N^2) tree from given distmat. | |
enum linkage_e |
void MuscleUpgma2 | ( | tree_t * | tree, |
symmatrix_t * | distmat, | ||
linkage_t | linkage, | ||
char ** | names | ||
) |
Creates a UPGMA in O(N^2) tree from given distmat.
[out] | tree | newly created rooted UPGMA tree |
[in] | distmat | distance matrix to be clustered |
[in] | linkage | linkage type |
[in] | names | leaf names, will be copied |
left and right node indices, as well as left and right branch-length and height for for internal nodes