libfreecontact 1.0.21
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#include <errno.h>
#include <map>
#include <math.h>
#include <stdexcept>
#include <stdint.h>
#include <string.h>
#include <vector>
Go to the source code of this file.
Classes | |
class | freecontact::alilen_error |
Alignment length exception. More... | |
class | freecontact::icme_timeout_error |
Inverse covariance matrix estimation timeout exception. More... | |
class | freecontact::ali_t |
Protein sequence alignment. More... | |
struct | freecontact::contact_t |
Contact prediction. More... | |
struct | freecontact::parset_t |
Parameter set structure for predictor::run(). More... | |
class | freecontact::predictor |
Protein residue contact predictor. More... | |
Namespaces | |
namespace | freecontact |
Macros | |
#define | LIBFREEC_API __attribute__ ((visibility ("default"))) |
#define | LIBFREEC_LOCAL __attribute__ ((visibility ("hidden"))) |
Typedefs | |
typedef long long __m128i | freecontact::__attribute__((__vector_size__(16), __may_alias__)) |
Functions | |
const parset_t | freecontact::ps_evfold (0.70, 0.0, 0.9, 1, 0.0, 0.5, false, 0.0, true, true, -1) |
const parset_t | freecontact::ps_psicov (0.62, 0.03, 0.9, 5, 1.0, 0.0, true, 0.1, false, false, -1) |
const parset_t | freecontact::ps_psicov_sd (0.62, 0.0, 0.9, 5, 1.0, 0.0, true, 0.1, false, false, 0.001) |
Variables | |
static const uint8_t | freecontact::aamap_gapidx = 20 |
static const uint8_t | freecontact::aamap [] |
static const uint8_t | freecontact::mapaa [] |
#define LIBFREEC_API __attribute__ ((visibility ("default"))) |
Definition at line 31 of file freecontact.h.
#define LIBFREEC_LOCAL __attribute__ ((visibility ("hidden"))) |
Definition at line 32 of file freecontact.h.