Package htsjdk.samtools.cram.structure
Class CramCompressionRecord.BAM_FLAGS
- java.lang.Object
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- htsjdk.samtools.cram.structure.CramCompressionRecord.BAM_FLAGS
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- Enclosing class:
- CramCompressionRecord
public static class CramCompressionRecord.BAM_FLAGS extends Object
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Field Summary
Fields Modifier and Type Field Description static int
DUPLICATE_READ_FLAG
static int
FIRST_OF_PAIR_FLAG
static int
MATE_STRAND_FLAG
static int
MATE_UNMAPPED_FLAG
static int
NOT_PRIMARY_ALIGNMENT_FLAG
static int
PROPER_PAIR_FLAG
static int
READ_FAILS_VENDOR_QUALITY_CHECK_FLAG
static int
READ_PAIRED_FLAG
static int
READ_STRAND_FLAG
static int
READ_UNMAPPED_FLAG
static int
SECOND_OF_PAIR_FLAG
static int
SUPPLEMENTARY_FLAG
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Constructor Summary
Constructors Constructor Description BAM_FLAGS()
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Field Detail
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READ_PAIRED_FLAG
public static final int READ_PAIRED_FLAG
- See Also:
- Constant Field Values
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PROPER_PAIR_FLAG
public static final int PROPER_PAIR_FLAG
- See Also:
- Constant Field Values
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READ_UNMAPPED_FLAG
public static final int READ_UNMAPPED_FLAG
- See Also:
- Constant Field Values
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MATE_UNMAPPED_FLAG
public static final int MATE_UNMAPPED_FLAG
- See Also:
- Constant Field Values
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READ_STRAND_FLAG
public static final int READ_STRAND_FLAG
- See Also:
- Constant Field Values
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MATE_STRAND_FLAG
public static final int MATE_STRAND_FLAG
- See Also:
- Constant Field Values
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FIRST_OF_PAIR_FLAG
public static final int FIRST_OF_PAIR_FLAG
- See Also:
- Constant Field Values
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SECOND_OF_PAIR_FLAG
public static final int SECOND_OF_PAIR_FLAG
- See Also:
- Constant Field Values
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NOT_PRIMARY_ALIGNMENT_FLAG
public static final int NOT_PRIMARY_ALIGNMENT_FLAG
- See Also:
- Constant Field Values
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READ_FAILS_VENDOR_QUALITY_CHECK_FLAG
public static final int READ_FAILS_VENDOR_QUALITY_CHECK_FLAG
- See Also:
- Constant Field Values
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DUPLICATE_READ_FLAG
public static final int DUPLICATE_READ_FLAG
- See Also:
- Constant Field Values
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SUPPLEMENTARY_FLAG
public static final int SUPPLEMENTARY_FLAG
- See Also:
- Constant Field Values
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