Package htsjdk.samtools.cram.build
Class ContainerParser
- java.lang.Object
-
- htsjdk.samtools.cram.build.ContainerParser
-
public class ContainerParser extends Object
-
-
Constructor Summary
Constructors Constructor Description ContainerParser(SAMFileHeader samFileHeader)
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description List<CramCompressionRecord>
getRecords(Container container, ArrayList<CramCompressionRecord> records, ValidationStringency validationStringency)
Map<Integer,AlignmentSpan>
getReferences(Container container, ValidationStringency validationStringency)
-
-
-
Constructor Detail
-
ContainerParser
public ContainerParser(SAMFileHeader samFileHeader)
-
-
Method Detail
-
getRecords
public List<CramCompressionRecord> getRecords(Container container, ArrayList<CramCompressionRecord> records, ValidationStringency validationStringency) throws IllegalArgumentException, IllegalAccessException
-
getReferences
public Map<Integer,AlignmentSpan> getReferences(Container container, ValidationStringency validationStringency) throws IOException
- Throws:
IOException
-
-