Package htsjdk.samtools.cram.lossy
Class QualityScorePreservation
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- htsjdk.samtools.cram.lossy.QualityScorePreservation
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public class QualityScorePreservation extends Object
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Constructor Summary
Constructors Constructor Description QualityScorePreservation(String specification)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addQualityScores(SAMRecord samRecord, CramCompressionRecord cramRecord, ReferenceTracks referenceTracks)
boolean
areReferenceTracksRequired()
List<PreservationPolicy>
getPreservationPolicies()
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Constructor Detail
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QualityScorePreservation
public QualityScorePreservation(String specification)
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Method Detail
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getPreservationPolicies
public List<PreservationPolicy> getPreservationPolicies()
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addQualityScores
public void addQualityScores(SAMRecord samRecord, CramCompressionRecord cramRecord, ReferenceTracks referenceTracks)
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areReferenceTracksRequired
public boolean areReferenceTracksRequired()
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