Package jebl.evolution.trees
Class NeighborJoiningTreeBuilder
- java.lang.Object
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- jebl.evolution.trees.ClusteringTreeBuilder<Tree>
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- jebl.evolution.trees.NeighborJoiningTreeBuilder
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- All Implemented Interfaces:
TreeBuilder<Tree>
public class NeighborJoiningTreeBuilder extends ClusteringTreeBuilder<Tree>
Constructs an unrooted tree by neighbor-joining using pairwise distances. Adapted from BEAST code.- Version:
- $Id: NeighborJoiningTreeBuilder.java 855 2007-12-11 04:04:18Z twobeers $
- Author:
- Andrew Rambaut, Alexei Drummond, Joseph Heled
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Constructor Summary
Constructors Constructor Description NeighborJoiningTreeBuilder(DistanceMatrix distanceMatrix)
construct NJ tree
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Method Summary
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Methods inherited from class jebl.evolution.trees.ClusteringTreeBuilder
addProgressListener, build, fireSetProgress, getBuilder, removeProgressListener
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Constructor Detail
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NeighborJoiningTreeBuilder
public NeighborJoiningTreeBuilder(DistanceMatrix distanceMatrix)
construct NJ tree- Parameters:
distanceMatrix
- distance matrix
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