Package jebl.evolution.substmodel
Class AminoAcidModel
- java.lang.Object
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- jebl.evolution.substmodel.AbstractRateMatrix
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- jebl.evolution.substmodel.AminoAcidModel
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- All Implemented Interfaces:
java.io.Serializable
,java.lang.Cloneable
,RateMatrix
- Direct Known Subclasses:
WAG
public abstract class AminoAcidModel extends AbstractRateMatrix
base class of rate matrices for amino acids- Version:
- $Id: AminoAcidModel.java 185 2006-01-23 23:03:18Z rambaut $
- Author:
- Korbinian Strimmer
- See Also:
- Serialized Form
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Method Summary
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Methods inherited from class jebl.evolution.substmodel.AbstractRateMatrix
getDimension, getEquilibriumFrequencies, getEquilibriumFrequency, getRelativeRates, getSequenceType, getTransitionProbabilities, getTransitionProbability, rebuild, scale, setDistance, setDistanceTranspose, setParametersNoScale
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Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface jebl.evolution.substmodel.RateMatrix
getUniqueName
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