Uses of Interface
pal.algorithmics.StoppingCriteria
Packages that use StoppingCriteria
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Uses of StoppingCriteria in pal.algorithmics
Methods in pal.algorithmics that return StoppingCriteria -
Uses of StoppingCriteria in pal.treesearch
Methods in pal.treesearch with parameters of type StoppingCriteriaModifier and TypeMethodDescriptiondouble
GeneralLikelihoodSearcher.optimiseAllFullHeirarchy
(StoppingCriteria mainStopper, StoppingCriteria subStopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) double
GeneralLikelihoodSearcher.optimiseAllPlusSubstitutionModel
(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, MultivariateMinimum substitutionModelMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, int substitutionModelOptimiseFrequency, MinimiserMonitor substitutionModelMonitor, MinimiserMonitor rateMonitor) double
GeneralLikelihoodSearcher.optimiseAllSimple
(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback) double
GeneralLikelihoodSearcher.optimiseAllSimple
(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) double
GeneralLikelihoodSearcher.optimiseAllSimple
(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor, int groupOptimistionType) double
GeneralLikelihoodSearcher.optimiseAllSimpleHeirarchy
(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) double
GeneralLikelihoodSearcher.optimiseGeneral
(StoppingCriteria stopper, int fracDigits, AlgorithmCallback callback) double
GeneralLikelihoodSearcher.optimiseGeneral
(StoppingCriteria stopper, int fracDigits, AlgorithmCallback callback, SearchMonitor monitor) double
UnrootedMLSearcher.simpleOptimiseLikelihood
(StoppingCriteria stopper, AlgorithmCallback callback) Optimise the branch lengths of the tree to obtain the maximum likelihood.