Uses of Interface
pal.tree.Tree

Packages that use Tree
Package
Description
Classes to model population genetic processes using the coalescent.
Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances).
Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.
GUI components for some special objects (e.g., trees).
Classes for the analysis of "measurably evolving populations" (mep).
Classes with useful for statistics (normal distribution, Gamma distribution, chi-square distribution, exponential distribution, likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.)
 
Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint).
 
Utility classes for converting PAL objects to and from XML documents.