Uses of Package
pal.substmodel

Packages that use pal.substmodel
Package
Description
Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances).
Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.
Classes with useful for statistics (normal distribution, Gamma distribution, chi-square distribution, exponential distribution, likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.)
Classes describing substitution models, i.e.
 
Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint).
 
Utility classes for converting PAL objects to and from XML documents.