Package pal.alignment
Class ConcatenatedAlignment
java.lang.Object
pal.alignment.AbstractAlignment
pal.alignment.ConcatenatedAlignment
- All Implemented Interfaces:
Serializable
,Alignment
,IdGroup
,Report
concatenates a list of alignments to one single alignment,
increasing the number of sites
- Version:
- $Id: ConcatenatedAlignment.java,v 1.3 2001/07/13 14:39:12 korbinian Exp $
- Author:
- Korbinian Strimmer
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from interface pal.misc.IdGroup
IdGroup.Utils
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Field Summary
Fields inherited from class pal.alignment.AbstractAlignment
idGroup, numSeqs, numSites
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionchar
getData
(int seq, int site) sequence alignment at (sequence, site)Methods inherited from class pal.alignment.AbstractAlignment
getAlignedSequenceString, getChar, getDataType, getIdCount, getIdentifier, getLength, getSequenceCount, getSiteCount, getState, getStates, guessDataType, isGap, isUnknownState, report, setDataType, setIdentifier, toString, whichIdNumber
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Constructor Details
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ConcatenatedAlignment
concatenate alignments- Parameters:
Alignment
- array with alignment to concatenate- Throws:
IllegalArgumentException
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Method Details
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getData
public char getData(int seq, int site) sequence alignment at (sequence, site)- Specified by:
getData
in interfaceAlignment
- Specified by:
getData
in classAbstractAlignment
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