Interface ConstraintModel.GroupManager

All Known Implementing Classes:
FixedBSRDTGlobalClockModel, FixedSRDTGlobalClockModel, GlobalClockModel, MRDTGlobalClockModel, SRDTGlobalClockModel
Enclosing interface:
ConstraintModel

public static interface ConstraintModel.GroupManager
  • Method Details

    • getLeafBaseHeight

      double getLeafBaseHeight(String leafLabel)
    • getBaseHeight

      double getBaseHeight(double originalExpectSubstitutionHeight)
    • getExpectedSubstitutionHeight

      double getExpectedSubstitutionHeight(double baseHeight)
    • getBaseHeightUnits

      int getBaseHeightUnits()
    • initialiseParameters

      void initialiseParameters(String[] leafNames, double[] leafHeights)
    • getAllGroupRelatedParameterAccess

      NeoParameterized getAllGroupRelatedParameterAccess()
    • getPrimaryGroupRelatedParameterAccess

      NeoParameterized getPrimaryGroupRelatedParameterAccess()
    • getSecondaryGroupRelatedParameterAccess

      NeoParameterized getSecondaryGroupRelatedParameterAccess()
    • createNewClockLeaf

      MolecularClockLikelihoodModel.Leaf createNewClockLeaf(PatternInfo pattern, int[] patternStateMatchup)
    • createNewClockExternal

      MolecularClockLikelihoodModel.External createNewClockExternal()
    • createNewClockInternal

      MolecularClockLikelihoodModel.Internal createNewClockInternal()