Uses of Class
pal.xml.XmlParseException
Packages that use XmlParseException
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Uses of XmlParseException in pal.xml
Methods in pal.xml that throw XmlParseExceptionModifier and TypeMethodDescriptionstatic Alignment
ElementParser.parseAlignmentElement
(Element e) Parses an alignment element and returns an alignment object.static Attribute
ElementParser.parseAttributeElement
(Element e) parses an attribute element.static DemographicModel
ElementParser.parseDemographicModel
(Element e) Parses an element from an DOM document into a DemographicModel.static Node
ElementParser.parseEdgeNodeElement
(Element e) static final double[]
ElementParser.parseFrequencies
(Element element) reads XML format of frequencies.static MutationRateModel
ElementParser.parseMutationRateModel
(Element e) Reads a mutation rate model from a DOM Document element.static Node
ElementParser.parseNodeElement
(Element e) static RateDistribution
ElementParser.parseRateDistribution
(Element e) static RateMatrix
ElementParser.parseRateMatrix
(Element e) Reads a rate matrix from a DOM Document element.protected static RateMatrix
ElementParser.parseRateMatrix
(Element e, Alignment a) Reads a rate matrix from a DOM Document element.static TimeOrderCharacterData
ElementParser.parseTimeDataElement
(Element e) static Tree
ElementParser.parseTreeElement
(Element e) static void
ElementParser.validateTagName
(Element e, String name) Throws a runtime exception if the element does not have the given name.