Uses of Package
pal.mep
Packages that use pal.mep
Package
Description
Classes to model population genetic processes using the coalescent.
Classes for the analysis of "measurably evolving populations" (mep).
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
Utility classes for converting PAL objects to and from XML documents.
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Classes in pal.mep used by pal.coalescentClassDescriptionThis abstract class contains methods that are of general use for modelling mutation rate changes over time.
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ClassDescriptionThis class models a constant mutation rate (parameter: mu = mutation rate).This abstract class contains methods that are of general use for modelling mutation rate changes over time.An interface for objects which generate fresh MutationRAteModelsThis class models a windowed mutation rate (parameter: mu = mutation rate).
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Classes in pal.mep used by pal.supgmaClassDescriptionThis abstract class contains methods that are of general use for modelling mutation rate changes over time.An interface for objects which generate fresh MutationRAteModels
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ClassDescriptionThis abstract class contains methods that are of general use for modelling mutation rate changes over time.An interface for objects which generate fresh MutationRAteModels
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ClassDescriptionThis abstract class contains methods that are of general use for modelling mutation rate changes over time.