Package pal.supgma
Class SUPGMADistanceMatrix
java.lang.Object
pal.distance.DistanceMatrix
pal.supgma.SUPGMADistanceMatrix
- All Implemented Interfaces:
Serializable
,IdGroup
Corrects distances in a distance matrix such that all tips appear
contemporaneous, given a time/date and rate information for the
taxa.
- Version:
- $Id: SUPGMADistanceMatrix.java,v 1.1 2003/10/19 02:35:26 matt Exp $
- Author:
- Alexei Drummond, Matthew Goode
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from interface pal.misc.IdGroup
IdGroup.Utils
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Constructor Summary
ConstructorsConstructorDescriptionSUPGMADistanceMatrix
(DistanceMatrix raw, TimeOrderCharacterData tocd, DeltaModel deltaModel) Uses date/time information and a constant rate to correct distance matrices. -
Method Summary
Methods inherited from class pal.distance.DistanceMatrix
absoluteDistance, addDistance, getClonedDistances, getClosestIndex, getClosestIndex, getDistance, getDistances, getIdCount, getIdentifier, getIdGroup, getSize, isSymmetric, meanDistance, printPHYLIP, setDistance, setDistances, setIdentifier, setIdGroup, squaredDistance, toString, whichIdNumber
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Constructor Details
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SUPGMADistanceMatrix
Uses date/time information and a constant rate to correct distance matrices.
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