Package pal.eval
Interface SiteDetails
public interface SiteDetails
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Nested Class Summary
Nested Classes -
Method Summary
Modifier and TypeMethodDescriptiondouble[]
Get the likelihoods for each site (not the log likelihoods)double[]
Get the likelihoods for each site (logged)double[]
getSitePosteriors
(int site)
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Method Details
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getRelatedModel
SubstitutionModel getRelatedModel() -
getSitePosteriors
double[] getSitePosteriors(int site) -
getSiteLikelihoods
double[] getSiteLikelihoods()Get the likelihoods for each site (not the log likelihoods)- Returns:
- a double array of likelihoods matching each site
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getSiteLogLikelihoods
double[] getSiteLogLikelihoods()Get the likelihoods for each site (logged)- Returns:
- a double array of log likelihoods matching each site
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