Here is a list of all class members with links to the classes they belong to:
- d -
- DaCompFunctor() : ralab::base::resample::DaCompFunctor< TReal >
- data() : pwiz::chemistry::Formula, pwiz::data::FrequencyData, pwiz::data::peakdata::Peak
- Data : pwiz::frequency::ParameterEstimator, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction
- data() : pwiz::minimxml::SAXParser::saxstring, pwiz::msdata::BinaryDataArray, pwiz::msdata::SpectrumInfo
- data_ : pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction
- data_type : pwiz::math::Stats
- databaseFilters : pwiz::identdata::SpectrumIdentificationProtocol
- databaseName : pwiz::data::pepxml::SearchDatabase, pwiz::identdata::SearchDatabase
- databaseReleaseIdentifier : pwiz::data::pepxml::SearchDatabase
- databaseTranslation : pwiz::identdata::SpectrumIdentificationProtocol
- dataCollection : pwiz::identdata::IdentData
- dataFilters : pwiz::data::pepxml::DatasetDerivation
- DataInfo() : pwiz::analysis::MSDataAnalyzer::DataInfo
- DataProcessing() : pwiz::msdata::DataProcessing
- dataProcessingPtr() : MyBase, pwiz::analysis::ChromatogramListWrapper, pwiz::msdata::BinaryDataArray, pwiz::msdata::Chromatogram, pwiz::msdata::ChromatogramList, pwiz::msdata::ChromatogramListBase, pwiz::msdata::ChromatogramListSimple, pwiz::msdata::Spectrum, pwiz::msdata::SpectrumList, pwiz::msdata::SpectrumListBase, pwiz::msdata::SpectrumListSimple, pwiz::msdata::SpectrumListWrapper
- dataProcessingPtrs : pwiz::msdata::MSData
- datasetDerivation : pwiz::data::pepxml::MSMSPipelineAnalysis
- dataSize : pwiz::msdata::SpectrumInfo
- date : pwiz::data::pepxml::MSMSPipelineAnalysis
- Datum : pwiz::frequency::ParameterEstimator, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction
- DBSequence() : pwiz::identdata::DBSequence
- dbsequence_p() : pwiz::identdata::dbsequence_p
- dbSequencePtr : pwiz::identdata::PeptideEvidence, pwiz::identdata::ProteinDetectionHypothesis
- dbSequences : pwiz::identdata::SequenceCollection
- decimalRatio : pwiz::data::pepxml::Q3RatioResult
- decode() : pwiz::msdata::BinaryDataEncoder
- decoyPrefix() : pwiz::analysis::ProteinList_DecoyGenerator::Predicate
- decoyPrefix_ : pwiz::analysis::ProteinList_DecoyGenerator::Predicate
- def : pwiz::cv::CVTermInfo, pwiz::data::Term
- defaultArrayLength : pwiz::msdata::Chromatogram, pwiz::msdata::Spectrum
- defaultArrayLengthSet_ : pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet
- defaultChargeMax_ : pwiz::analysis::SpectrumList_ChargeFromIsotope
- defaultChargeMin_ : pwiz::analysis::SpectrumList_ChargeFromIsotope
- defaultInstrumentConfigurationPtr : pwiz::msdata::Run
- defaultIsolationWidth_ : pwiz::analysis::SpectrumList_ChargeFromIsotope
- defaultMaxCharge : TestChargeStateCalculator
- defaultMinCharge : TestChargeStateCalculator
- DefaultReaderList() : pwiz::identdata::DefaultReaderList, pwiz::msdata::DefaultReaderList, pwiz::proteome::DefaultReaderList, pwiz::tradata::DefaultReaderList
- defaultSourceFilePtr : pwiz::msdata::Run
- DefaultTabHandler() : pwiz::util::DefaultTabHandler
- defaultWindowWidth : pwiz::analysis::IsolationWindowFilter
- defBreak() : ralab::base::resample::Convert2Dense
- define() : pwiz::msdata::Component
- delegate : pwiz::minimxml::SAXParser::Handler::Status
- Delegate : pwiz::minimxml::SAXParser::Handler::Status
- delim : pwiz::analysis::PepxmlRecordReader::Config
- delim_ : pwiz::identdata::DelimWriter
- delim_equal() : pwiz::analysis::TabularConfig
- Delimiter : pwiz::analysis::TabularConfig
- delimiter_ : pwiz::analysis::TabularConfig
- Delimiter_Comma : pwiz::analysis::TabularConfig
- Delimiter_FixedWidth : pwiz::analysis::TabularConfig
- Delimiter_Space : pwiz::analysis::TabularConfig
- Delimiter_Tab : pwiz::analysis::TabularConfig
- DelimReader() : pwiz::identdata::DelimReader
- DelimWriter() : pwiz::identdata::DelimWriter
- delta : pwiz::analysis::PepxmlRecordReader::record
- deltaAvgMass : TestModification
- deltacn : pwiz::analysis::PepxmlRecordReader::record
- deltacnstar : pwiz::analysis::PepxmlRecordReader::record
- deltaMonoMass : TestModification
- demuxBlockExtra : pwiz::analysis::SpectrumList_Demux::Params
- DemuxBoundary() : pwiz::analysis::PrecursorMaskCodec::DemuxBoundary
- DemuxDebugReader() : pwiz::analysis::DemuxDebugReader
- DemuxDebugWriter() : pwiz::analysis::DemuxDebugWriter
- DemuxWindow() : pwiz::analysis::DemuxWindow
- demuxWindow : pwiz::analysis::IsolationWindow
- dependant : pwiz::identdata::CVMap
- depth_ : pwiz::identdata::TextWriter, pwiz::msdata::TextWriter, pwiz::proteome::TextWriter, pwiz::tradata::TextWriter
- dereference() : pwiz::peptideid::PeptideID::Iterator, pwiz::peptideid::PeptideID::IteratorInternal
- describe() : EvenMS2Predicate, EvenPredicate, HasBinaryDataPredicate, pwiz::analysis::ChromatogramDataFilter, pwiz::analysis::IsolationWindowFilter, pwiz::analysis::MS2Deisotoper, pwiz::analysis::MS2NoiseFilter, pwiz::analysis::PrecursorMassFilter, pwiz::analysis::SpectrumDataFilter, pwiz::analysis::SpectrumList_Filter::Predicate, pwiz::analysis::SpectrumList_FilterPredicate_ActivationType, pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType, pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet, pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet, pwiz::analysis::SpectrumList_FilterPredicate_IdSet, pwiz::analysis::SpectrumList_FilterPredicate_IndexSet, pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet, pwiz::analysis::SpectrumList_FilterPredicate_MzPresent, pwiz::analysis::SpectrumList_FilterPredicate_Polarity, pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet, pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet, pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet, pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange, pwiz::analysis::SpectrumList_FilterPredicate_ThermoScanFilter, pwiz::analysis::ThresholdFilter, SelectedIndexPredicate
- description() : pwiz::analysis::analyzer_strings< analyzer_type >, pwiz::analysis::analyzer_strings< MetadataReporter >, pwiz::analysis::analyzer_strings< RegionSIC >, pwiz::analysis::analyzer_strings< RegionSlice >, pwiz::analysis::analyzer_strings< RegionTIC >, pwiz::analysis::analyzer_strings< RunSummary >, pwiz::analysis::analyzer_strings< SpectrumBinaryData >, pwiz::analysis::analyzer_strings< SpectrumTable >, pwiz::data::pepxml::AminoAcidModification, pwiz::data::pepxml::DataFilter, pwiz::data::pepxml::SampleEnzyme, pwiz::proteome::Protein
- detailLevel_ : HasBinaryDataPredicate
- detect() : pwiz::analysis::CwtPeakDetector, pwiz::analysis::FeatureDetector, pwiz::analysis::FeatureDetectorPeakel, pwiz::analysis::FeatureDetectorSimple, pwiz::analysis::LocalMaximumPeakDetector, pwiz::analysis::PeakDetector, pwiz::analysis::PeakFamilyDetector, pwiz::analysis::PeakFamilyDetectorFT
- detectionRadius() : pwiz::frequency::PeakDetectorNaive
- detector() : pwiz::msdata::ComponentList, pwiz::msdata::LegacyAdapter_Instrument
- Diff() : pwiz::data::Diff< object_type, config_type, object_result_type >
- diff_ : ralab::base::resample::SamplingWith
- DiffAndIntegrateTest() : CubicHermiteSplineTest
- DiffConfig() : pwiz::identdata::DiffConfig, pwiz::msdata::DiffConfig, pwiz::proteome::DiffConfig, pwiz::tradata::DiffConfig
- difference_type : pwiz::msdata::SpectrumIterator, pwiz::proteome::Digestion::const_iterator, pwiz::util::BinaryData< T >, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >, pwiz::util::IntegerSet::Iterator, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- differenceQuotient() : pwiz::frequency::DerivativeTest::VectorFunction< value_type >
- Differentiate() : IInterpolation, pwiz::analysis::CubicHermiteSpline
- DigestedPeptide() : pwiz::proteome::DigestedPeptide
- Digestion : pwiz::proteome::Digestion::const_iterator, pwiz::proteome::Digestion
- Digestion::Impl : pwiz::proteome::Digestion::const_iterator
- disambiguateCleavageAgentRegex() : pwiz::proteome::Digestion
- distribution() : pwiz::chemistry::IsotopeCalculator, pwiz::chemistry::IsotopeTable
- distribution_point : pwiz::data::pepxml::PeptideProphetSummary
- domain : pwiz::math::MatchedFilter::SampledData< space_type >
- domain_type : pwiz::math::MatchedFilter::SampledData< space_type >
- domainWidth() : pwiz::math::MatchedFilter::SampledData< space_type >
- done() : pwiz::analysis::ChromatogramList_Filter::Predicate, pwiz::analysis::ChromatogramList_FilterPredicate_IndexSet, pwiz::analysis::ProteinList_Filter::Predicate, pwiz::analysis::ProteinList_FilterPredicate_IdSet, pwiz::analysis::ProteinList_FilterPredicate_IndexSet, pwiz::analysis::SpectrumList_Filter::Predicate, pwiz::analysis::SpectrumList_FilterPredicate_IdSet, pwiz::analysis::SpectrumList_FilterPredicate_IndexSet, pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet
- Done : pwiz::minimxml::SAXParser::Handler::Status
- done : Reader1::Config, Reader1::ReaderConfig, Reader2::Config, Reader2::ReaderConfig, SelectedIndexPredicate
- dot : pwiz::math::MatchedFilter::Correlation< Y >
- dot_product : pwiz::analysis::PepxmlRecordReader::record
- dp() : ParametrizedCosine, pwiz::frequency::ParametrizedFunction< value_type >, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction, pwiz::frequency::TruncatedLorentzian, pwiz::msdata::ChromatogramListSimple, pwiz::msdata::SpectrumListSimple
- dp2() : ParametrizedCosine, pwiz::frequency::ParametrizedFunction< value_type >, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction, pwiz::frequency::TruncatedLorentzian
- dp_ : pwiz::analysis::ChromatogramListWrapper, pwiz::msdata::ChromatogramListBase, pwiz::msdata::SpectrumListBase, pwiz::msdata::SpectrumListWrapper
- dummy : pwiz::math::MatchedFilter::KernelTraits< Kernel >
- dumpRegionData : pwiz::analysis::RegionAnalyzer::Config
- dx() : pwiz::math::MatchedFilter::SampledData< space_type >