ProteoWizard
Class Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Z
A
Activation
(
pwiz::msdata
)
AdaptedErrorDerivative
(
pwiz::frequency::DerivativeTest
)
AdaptedErrorFunction
(
pwiz::frequency::DerivativeTest
)
AlternativeProtein
(
pwiz::data::pepxml
)
AmbiguousResidue
(
pwiz::identdata
)
AminoAcidModification
(
pwiz::data::pepxml
)
AnalysisCollection
(
pwiz::identdata
)
AnalysisData
(
pwiz::identdata
)
AnalysisProtocolCollection
(
pwiz::identdata
)
AnalysisResult
(
pwiz::data::pepxml
)
AnalysisSampleCollection
(
pwiz::identdata
)
AnalysisSoftware
(
pwiz::identdata
)
AnalysisSummary
(
pwiz::data::pepxml
)
AnalysisTimestamp
(
pwiz::data::pepxml
)
analyzer_strings
(
pwiz::analysis
)
analyzer_strings< MetadataReporter >
(
pwiz::analysis
)
analyzer_strings< RegionSIC >
(
pwiz::analysis
)
analyzer_strings< RegionSlice >
(
pwiz::analysis
)
analyzer_strings< RegionTIC >
(
pwiz::analysis
)
analyzer_strings< RunSummary >
(
pwiz::analysis
)
analyzer_strings< SpectrumBinaryData >
(
pwiz::analysis
)
analyzer_strings< SpectrumTable >
(
pwiz::analysis
)
AnotherRootHandler
Handler::Attributes::attribute
(
pwiz::minimxml::SAXParser
)
Handler::Attributes
(
pwiz::minimxml::SAXParser
)
XMLWriter::Attributes
(
pwiz::minimxml
)
B
BadListener
BaseDiffConfig
(
pwiz::data
)
basic_charcounter
(
pwiz::minimxml
)
BibliographicReference
(
pwiz::identdata
)
Bin1D
(
ralab::base::resample
)
BinaryData
(
pwiz::util
)
BinaryDataArray
(
pwiz::msdata
)
BinaryDataEncoder
(
pwiz::msdata
)
BinaryIndexStream
(
pwiz::data
)
Bucket1D
(
ralab::base::resample
)
C
SpectrumListCache::CacheEntry
(
pwiz::msdata
)
CalibrationParameters
(
pwiz::data
)
CancelListener
CancelProgressCallback
basic_charcounter::category
(
pwiz::minimxml
)
CharIndexedVector
(
pwiz::util
)
CharIndexedVectorConstIterator
(
pwiz::util
)
CharIndexedVectorIterator
(
pwiz::util
)
Chromatogram
(
pwiz::msdata
)
ChromatogramDataFilter
(
pwiz::analysis
)
ChromatogramIdentity
(
pwiz::msdata
)
ChromatogramList
(
pwiz::msdata
)
ChromatogramList_ABI
(
pwiz::msdata::detail
)
ChromatogramList_Agilent
(
pwiz::msdata::detail
)
ChromatogramList_Bruker
(
pwiz::msdata::detail
)
ChromatogramList_Filter
(
pwiz::analysis
)
ChromatogramList_FilterPredicate_IndexSet
(
pwiz::analysis
)
ChromatogramList_LockmassRefiner
(
pwiz::analysis
)
ChromatogramList_mzML
(
pwiz::msdata
)
ChromatogramList_SavitzkyGolaySmoother
(
pwiz::analysis
)
ChromatogramList_Shimadzu
(
pwiz::msdata::detail
)
ChromatogramList_Thermo
(
pwiz::msdata::detail
)
ChromatogramList_Waters
(
pwiz::msdata::detail
)
ChromatogramList_XICGenerator
(
pwiz::analysis
)
ChromatogramListBase
(
pwiz::msdata
)
ChromatogramListFactory
(
pwiz::analysis
)
ChromatogramListSimple
(
pwiz::msdata
)
ChromatogramListWrapper
(
pwiz::analysis
)
ClickwrapPrompter
(
pwiz::util
)
Image::Color
(
pwiz::util
)
Component
(
pwiz::msdata
)
ComponentList
(
pwiz::msdata
)
Compound
(
pwiz::tradata
)
IsotopeEnvelopeEstimator::Config
(
pwiz::chemistry
)
FrequencyEstimatorPhysicalModel::Config
(
pwiz::frequency
)
PeakDetectorMatchedFilter::Config
(
pwiz::frequency
)
Reader::Config
(
pwiz::identdata
)
RegionSlice::Config
(
pwiz::analysis
)
Serializer_mzIdentML::Config
(
pwiz::identdata
)
Serializer_pepXML::Config
(
pwiz::identdata
)
Serializer_protXML::Config
(
pwiz::identdata
)
Serializer_Text::Config
(
pwiz::identdata
)
XMLWriter::Config
(
pwiz::minimxml
)
BinaryDataEncoder::Config
(
pwiz::msdata
)
Reader::Config
(
pwiz::msdata
)
Serializer_mzML::Config
(
pwiz::msdata
)
Serializer_mzXML::Config
(
pwiz::msdata
)
SpectrumIterator::Config
(
pwiz::msdata
)
Digestion::Config
(
pwiz::proteome
)
Reader_FASTA::Config
(
pwiz::proteome
)
Serializer_FASTA::Config
(
pwiz::proteome
)
Reader1::Config
Reader2::Config
PeakFinder_SNR::Config
(
pwiz::analysis
)
SpectrumTable::Config
(
pwiz::analysis
)
FeatureDetectorPeakel::Config
(
pwiz::analysis
)
MS2Deisotoper::Config
(
pwiz::analysis
)
MS2NoiseFilter::Config
(
pwiz::analysis
)
MSDataCache::Config
(
pwiz::analysis
)
NoiseCalculator_2Pass::Config
(
pwiz::analysis
)
PeakelGrower_Proximity::Config
(
pwiz::analysis
)
PeakelPicker_Basic::Config
(
pwiz::analysis
)
PeakFamilyDetectorFT::Config
(
pwiz::analysis
)
PeakFitter_Parabola::Config
(
pwiz::analysis
)
PepxmlRecordReader::Config
(
pwiz::analysis
)
PrecursorMassFilter::Config
(
pwiz::analysis
)
PrecursorRecalculatorDefault::Config
(
pwiz::analysis
)
RegionAnalyzer::Config
(
pwiz::analysis
)
RegionSIC::Config
(
pwiz::analysis
)
RegionTIC::Config
(
pwiz::analysis
)
RunSummary::Config
(
pwiz::analysis
)
SpectrumBinaryData::Config
(
pwiz::analysis
)
Configuration
(
pwiz::tradata
)
BinaryData::const_iterator
(
pwiz::util
)
Digestion::const_iterator
(
pwiz::proteome
)
Contact
(
pwiz::identdata
)
Contact
(
pwiz::msdata
)
Contact
(
pwiz::tradata
)
ContactRole
(
pwiz::identdata
)
Convert2Dense
(
ralab::base::resample
)
Correlation
(
pwiz::math::MatchedFilter
)
CosineInterpolate
(
ralab::base::base::utilities
)
CSHA1
CubicHermiteSpline
(
pwiz::analysis
)
CubicHermiteSplineTest
CubicInterpolate
(
ralab::base::base::utilities
)
CustomPair
CV
(
pwiz::cv
)
CVIDMatchCVMap
(
pwiz::identdata
)
CVMap
(
pwiz::identdata
)
CVParam
(
pwiz::data
)
CVParamIs
(
pwiz::data
)
CVParamIsChildOf
(
pwiz::data
)
CVTermInfo
(
pwiz::cv
)
CVTranslator
(
pwiz::data
)
CwtPeakDetector
(
pwiz::analysis
)
D
DaCompFunctor
(
ralab::base::resample
)
DatabaseTranslation
(
pwiz::identdata
)
DataCollection
(
pwiz::identdata
)
DataFilter
(
pwiz::data::pepxml
)
MSDataAnalyzer::DataInfo
(
pwiz::analysis
)
DataProcessing
(
pwiz::msdata
)
DatasetDerivation
(
pwiz::data::pepxml
)
Datum
DBSequence
(
pwiz::identdata
)
dbsequence_p
(
pwiz::identdata
)
DefaultArrayLengthSorter
DefaultReaderList
(
pwiz::identdata
)
DefaultReaderList
(
pwiz::msdata
)
DefaultReaderList
(
pwiz::proteome
)
DefaultReaderList
(
pwiz::tradata
)
DefaultTabHandler
(
pwiz::util
)
DelimReader
(
pwiz::identdata
)
DelimWriter
(
pwiz::identdata
)
PrecursorMaskCodec::DemuxBoundary
(
pwiz::analysis
)
DemuxDebugReader
(
pwiz::analysis
)
DemuxDebugRWTest
DemuxDebugWriter
(
pwiz::analysis
)
DemuxHelpersTest
DemuxSolver
(
pwiz::analysis
)
DemuxSolverTest
DemuxTest
DemuxWindow
(
pwiz::analysis
)
Diff
(
pwiz::data
)
DiffConfig
(
pwiz::identdata
)
DiffConfig
(
pwiz::tradata
)
DiffConfig
(
pwiz::proteome
)
DiffConfig
(
pwiz::msdata
)
DigestedPeptide
(
pwiz::proteome
)
DigestedPeptideLessThan
Digestion
(
pwiz::proteome
)
DistributionPoint
(
pwiz::data::pepxml
)
KernelTraits::Dummy
(
pwiz::math::MatchedFilter
)
E
Element
(
pwiz::chemistry::detail
)
Index::Entry
(
pwiz::data
)
EnumConstantNotPresentException
EnzymaticSearchConstraint
(
pwiz::data::pepxml
)
Enzyme
(
pwiz::identdata
)
EnzymePtr_missedCleavages
EnzymePtr_specificity
Enzymes
(
pwiz::identdata
)
ParametrizedFunction::ErrorFunction
(
pwiz::frequency
)
ErrorPoint
(
pwiz::data::pepxml
)
EvenMS2Predicate
EvenPredicate
EvenRequester
Evidence
(
pwiz::tradata
)
ExtendedReaderList
(
pwiz::msdata
)
ExtraZeroSamplesFilter
(
pwiz::analysis
)
F
Feature
(
pwiz::data::peakdata
)
FeatureDetector
(
pwiz::analysis
)
FeatureDetectorPeakel
(
pwiz::analysis
)
FeatureDetectorSimple
(
pwiz::analysis
)
FeatureFile
(
pwiz::data::peakdata
)
FeatureModeler
(
pwiz::analysis
)
FeatureModeler_Gaussian
(
pwiz::analysis
)
Fifth
FifthHandler
FileContent
(
pwiz::msdata
)
FileDescription
(
pwiz::msdata
)
Filter
(
pwiz::identdata
)
FilterWrapper
First
FirstHandler
FlatRecordBuilder
(
pwiz::peptideid
)
Formula
(
pwiz::chemistry
)
FragmentArray
(
pwiz::identdata
)
Fragmentation
(
pwiz::proteome
)
FrequencyData
(
pwiz::data
)
FrequencyEstimator
(
pwiz::frequency
)
FrequencyEstimatorPhysicalModel
(
pwiz::frequency
)
FrequencyEstimatorSimple
(
pwiz::frequency
)
FTMSCompFunctor
(
ralab::base::resample
)
FTSieve
G
Gauss
(
ralab::base::filter::utilities
)
Gauss_1deriv
(
ralab::base::filter::utilities
)
Goober
H
Handler
(
pwiz::minimxml::SAXParser
)
HandlerFeature
(
pwiz::data::peakdata
)
HandlerPeak
(
pwiz::data::peakdata
)
HandlerPeakel
(
pwiz::data::peakdata
)
HasBinaryDataPredicate
HasID
(
pwiz::data::diff_impl
)
HermiteInterpolate
(
ralab::base::base::utilities
)
I
id_p
(
pwiz::identdata
)
IDemultiplexer
(
pwiz::analysis
)
IdentData
(
pwiz::identdata
)
IdentDataFile
(
pwiz::identdata
)
Identifiable
(
pwiz::identdata
)
IdentifiableParamContainer
(
pwiz::identdata
)
IInterpolation
Image
(
pwiz::util
)
Index
(
pwiz::data
)
Index_mzML
(
pwiz::msdata
)
SpectrumList_mzXML::index_not_found
(
pwiz::msdata
)
IndexList
(
pwiz::proteome
)
IndexList
(
pwiz::msdata
)
Inputs
(
pwiz::identdata
)
Instrument
(
pwiz::tradata
)
InstrumentConfiguration
(
pwiz::msdata
)
IntegerSet
(
pwiz::util
)
Interpretation
(
pwiz::tradata
)
IntegerSet::Interval
(
pwiz::util
)
IonType
(
pwiz::identdata
)
IPIFASTADatabase
(
pwiz::proteome
)
IPrecursorMaskCodec
(
pwiz::analysis
)
Is_T2D_Directory
IsDirectory
IsIMSData
isoChain
IsolationWindow
(
pwiz::analysis
)
IsolationWindow
(
pwiz::msdata
)
IsolationWindowFilter
(
pwiz::analysis
)
Isotope
(
pwiz::chemistry::detail
)
IsotopeCalculator
(
pwiz::chemistry
)
isotopeChain
IsotopeEnvelopeEstimator
(
pwiz::chemistry
)
IsotopeTable
(
pwiz::chemistry
)
IsoWindowHasher
(
pwiz::analysis
)
IsRawData
IsRawFile
IsTDF
IsWiffFile
IterationListener
(
pwiz::util
)
IterationListenerRegistry
(
pwiz::util
)
PeptideID::Iterator
(
pwiz::peptideid
)
BinaryData::iterator
(
pwiz::util
)
IntegerSet::Iterator
(
pwiz::util
)
PeptideID::IteratorInternal
(
pwiz::peptideid
)
K
KernelTraits
(
pwiz::math::MatchedFilter
)
KernelTraitsBase
(
pwiz::math::MatchedFilter
)
KernelTraitsBase< Y(*)(X)>
(
pwiz::math::MatchedFilter
)
L
LegacyAdapter_Instrument
(
pwiz::msdata
)
LegacyAdapter_Software
(
pwiz::msdata
)
LinearInterpolate
(
ralab::base::base::utilities
)
LinearLeastSquares
(
pwiz::math
)
LinearLeastSquares< LinearLeastSquaresType_LU >
(
pwiz::math
)
LinearLeastSquares< LinearLeastSquaresType_QR >
(
pwiz::math
)
LinearSolver
(
pwiz::math
)
LinearSolver< LinearSolverType_LU >
(
pwiz::math
)
LinearSolver< LinearSolverType_QR >
(
pwiz::math
)
LocalMaximumPeakDetector
(
pwiz::analysis
)
LocalMinPeakArea
(
ralab::base::ms
)
PeptideID::Location
(
pwiz::peptideid
)
location_less
(
pwiz::peptideid
)
Lock
(
pwiz::util
)
M
MagnitudeLorentzian
(
pwiz::frequency
)
MascotReader
(
pwiz::identdata
)
MassAbundance
(
pwiz::chemistry
)
MassTable
(
pwiz::identdata
)
Match
(
pwiz::data::pepxml
)
MatchData
(
pwiz::data::pepxml
)
MatrixIO
(
pwiz::analysis
)
MatrixIOTest
meanfunctor
(
ralab::base::resample::utilities
)
Measure
(
pwiz::identdata
)
MemoryIndex
(
pwiz::data
)
MemoryMRUCache
(
pwiz::msdata
)
MetadataReporter
(
pwiz::analysis
)
Mexican_Hat
(
ralab::base::filter::utilities
)
Mexican_Hat2
(
ralab::base::filter::utilities
)
MixtureModel
(
pwiz::data::pepxml
)
ModAminoAcidMass
(
pwiz::data::pepxml
)
Modification
(
pwiz::identdata
)
Modification
(
pwiz::proteome
)
Modification
(
pwiz::tradata
)
ModificationInfo
(
pwiz::data::pepxml
)
ModificationList
(
pwiz::proteome
)
ModificationMap
(
pwiz::proteome
)
mru_list
(
pwiz::util
)
MS2Deisotoper
(
pwiz::analysis
)
MS2NoiseFilter
(
pwiz::analysis
)
MSData
(
pwiz::msdata
)
MSDataAnalyzer
(
pwiz::analysis
)
MSDataAnalyzerContainer
(
pwiz::analysis
)
MSDataAnalyzerDriver
(
pwiz::analysis
)
MSDataCache
(
pwiz::analysis
)
MSDataFile
(
pwiz::msdata
)
MSDataMerger
(
pwiz::msdata
)
MSDataWithSettableVersion
DemuxTest::MSDPair
MSIHandler
(
pwiz::util
)
MSInspectRecordBuilder
(
pwiz::peptideid
)
MSLevelSorter
MSMSPipelineAnalysis
(
pwiz::data::pepxml
)
MSMSRunSummary
(
pwiz::data::pepxml
)
MSnHeader
(
pwiz::msdata
)
MSXDemultiplexer
(
pwiz::analysis
)
MyBase
MyPred
MyWrapper
MZIntensityPair
(
pwiz::msdata
)
mzrtEqual
MZRTField
(
pwiz::analysis
)
MZTolerance
(
pwiz::chemistry
)
N
nativeID_less
(
pwiz::peptideid
)
NestedHandler
NNLSSolver
(
pwiz::analysis
)
PeakFamilyDetectorFT::NoDataException
(
pwiz::analysis
)
Noise
(
pwiz::analysis
)
NoiseCalculator
(
pwiz::analysis
)
NoiseCalculator_2Pass
(
pwiz::analysis
)
NoVendorPeakPickingException
(
pwiz::analysis
)
NthPower
(
ralab::base::stats
)
O
OBO
(
pwiz::data
)
once_flag_proxy
(
pwiz::util
)
OneMinusAbs
OrderedPair
(
pwiz::math
)
OrderedPairContainerRef
(
pwiz::math
)
Organization
(
pwiz::identdata
)
organization_p
(
pwiz::identdata
)
XMLWriter::OutputObserver
(
pwiz::minimxml
)
OverlapDemultiplexer
(
pwiz::analysis
)
P
pairData
Parabola
(
pwiz::math
)
ParamContainer
(
pwiz::data
)
Software::Parameter
(
pwiz::data::peakdata
)
Parameter
(
pwiz::data::pepxml
)
ParameterEstimator
(
pwiz::frequency
)
ParametrizedCosine
ParametrizedDerivativeSlice
(
pwiz::frequency::DerivativeTest
)
ParametrizedFunction
(
pwiz::frequency
)
ParametrizedFunctionSlice
(
pwiz::frequency::DerivativeTest
)
ParamGroup
(
pwiz::data
)
MSXDemultiplexer::Params
(
pwiz::analysis
)
OverlapDemultiplexer::Params
(
pwiz::analysis
)
SpectrumList_Demux::Params
(
pwiz::analysis
)
parentIon
Peak
(
pwiz::analysis
)
Peak
(
pwiz::data::peakdata
)
PeakData
(
pwiz::data::peakdata
)
PeakDetector
(
pwiz::analysis
)
PeakDetector
(
pwiz::frequency
)
PeakDetectorMatchedFilter
(
pwiz::frequency
)
PeakDetectorNaive
(
pwiz::frequency
)
Peakel
(
pwiz::data::peakdata
)
PeakelGrower
(
pwiz::analysis
)
PeakelGrower_Proximity
(
pwiz::analysis
)
PeakelPicker
(
pwiz::analysis
)
PeakelPicker_Basic
(
pwiz::analysis
)
PeakExtractor
(
pwiz::analysis
)
PeakFamily
(
pwiz::data::peakdata
)
PeakFamilyDetector
(
pwiz::analysis
)
PeakFamilyDetectorFT
(
pwiz::analysis
)
PeakFinder
(
pwiz::analysis
)
PeakFinder_SNR
(
pwiz::analysis
)
PeakFitter
(
pwiz::analysis
)
PeakFitter_Parabola
(
pwiz::analysis
)
PeakPicker
(
ralab::base::ms
)
Pep2MzIdent
(
pwiz::identdata
)
Peptide
(
pwiz::tradata
)
Peptide
(
pwiz::proteome
)
Peptide
(
pwiz::identdata
)
PeptideEvidence
(
pwiz::identdata
)
PeptideHypothesis
(
pwiz::identdata
)
PeptideID
(
pwiz::peptideid
)
PeptideID_flat
(
pwiz::peptideid
)
PeptideID_pepXml
(
pwiz::peptideid
)
PeptideIDMap
(
pwiz::peptideid
)
PeptideProphetResult
(
pwiz::data::pepxml
)
PeptideProphetSummary
(
pwiz::data::pepxml
)
PepxmlRecordReader
(
pwiz::analysis
)
PepXMLSpecificity
(
pwiz::identdata
)
Person
(
pwiz::identdata
)
person_p
(
pwiz::identdata
)
pinned_gcroot
(
msclr
)
Image::Point
(
pwiz::util
)
PPMCompFunctor
(
ralab::base::resample
)
Precursor
(
pwiz::msdata
)
Precursor
(
pwiz::tradata
)
precursorGroup
PrecursorRecalculator::PrecursorInfo
(
pwiz::analysis
)
SpectrumList_PrecursorRefine::PrecursorInfo
(
pwiz::analysis
)
SpectrumInfo::PrecursorInfo
(
pwiz::msdata
)
PrecursorMaskCodec
(
pwiz::analysis
)
PrecursorMassFilter
(
pwiz::analysis
)
PrecursorRecalculator
(
pwiz::analysis
)
PrecursorRecalculatorDefault
(
pwiz::analysis
)
ChromatogramList_Filter::Predicate
(
pwiz::analysis
)
ProteinList_DecoyGenerator::Predicate
(
pwiz::analysis
)
ProteinList_Filter::Predicate
(
pwiz::analysis
)
SpectrumList_Filter::Predicate
(
pwiz::analysis
)
SpectrumList_Sorter::Predicate
(
pwiz::analysis
)
Prediction
(
pwiz::tradata
)
PrintAttribute
PrintEventHandler
ProcessingMethod
(
pwiz::msdata
)
Product
(
pwiz::tradata
)
Product
(
pwiz::msdata
)
ProductSpace
(
pwiz::math::MatchedFilter
)
MSDataAnalyzerDriver::ProgressCallback
(
pwiz::analysis
)
Protein
(
pwiz::proteome
)
Protein
(
pwiz::tradata
)
ProteinAmbiguityGroup
(
pwiz::identdata
)
ProteinDetection
(
pwiz::identdata
)
ProteinDetectionHypothesis
(
pwiz::identdata
)
ProteinDetectionList
(
pwiz::identdata
)
ProteinDetectionProtocol
(
pwiz::identdata
)
ProteinList
(
pwiz::proteome
)
ProteinList_DecoyGenerator
(
pwiz::analysis
)
ProteinList_DecoyGeneratorPredicate_Reversed
(
pwiz::analysis
)
ProteinList_DecoyGeneratorPredicate_Shuffled
(
pwiz::analysis
)
ProteinList_Filter
(
pwiz::analysis
)
ProteinList_FilterPredicate_IdSet
(
pwiz::analysis
)
ProteinList_FilterPredicate_IndexSet
(
pwiz::analysis
)
ProteinListCache
(
pwiz::proteome
)
ProteinListFactory
(
pwiz::analysis
)
ProteinListSimple
(
pwiz::proteome
)
ProteinListWrapper
(
pwiz::proteome
)
ProteomeData
(
pwiz::proteome
)
ProteomeDataFile
(
pwiz::proteome
)
Provider
(
pwiz::identdata
)
Publication
(
pwiz::tradata
)
Q
Q3RatioResult
(
pwiz::data::pepxml
)
R
random_access_compressed_ifstream
(
pwiz::util
)
RawMassDatum
Reader
(
pwiz::identdata
)
Reader
(
pwiz::msdata
)
Reader
(
pwiz::proteome
)
Reader
(
pwiz::tradata
)
Reader1
Reader2
Reader_ABI
(
pwiz::msdata
)
Reader_ABI_T2D
(
pwiz::msdata
)
Reader_Agilent
(
pwiz::msdata
)
Reader_Bruker
(
pwiz::msdata
)
Reader_BTDX
(
pwiz::msdata
)
Reader_FASTA
(
pwiz::proteome
)
Reader_MGF
(
pwiz::msdata
)
Reader_MSn
(
pwiz::msdata
)
Reader_mz5
(
pwiz::msdata
)
Reader_mzML
(
pwiz::msdata
)
Reader_mzXML
(
pwiz::msdata
)
Reader_Shimadzu
(
pwiz::msdata
)
Reader_Thermo
(
pwiz::msdata
)
Reader_UIMF
(
pwiz::msdata
)
Reader_UNIFI
(
pwiz::msdata
)
Reader_Waters
(
pwiz::msdata
)
Reader1::ReaderConfig
Reader2::ReaderConfig
ReaderFail
(
pwiz::tradata
)
ReaderFail
(
pwiz::proteome
)
ReaderFail
(
pwiz::identdata
)
ReaderFail
(
pwiz::msdata
)
ReaderList
(
pwiz::identdata
)
ReaderList
(
pwiz::msdata
)
ReaderList
(
pwiz::proteome
)
ReaderList
(
pwiz::tradata
)
ReaderTestConfig
(
pwiz::util
)
PepxmlRecordReader::record
(
pwiz::analysis
)
Record
(
pwiz::chemistry::Element::Info
)
PeptideID::Record
(
pwiz::peptideid
)
Record
(
pwiz::proteome::AminoAcid::Info
)
IPIFASTADatabase::Record
(
pwiz::proteome
)
MSIHandler::Record
(
pwiz::util
)
RegexCVMap
(
pwiz::identdata
)
RegionAnalyzer
(
pwiz::analysis
)
RegionSIC
(
pwiz::analysis
)
RegionSlice
(
pwiz::analysis
)
RegionTIC
(
pwiz::analysis
)
Residue
(
pwiz::identdata
)
RetentionTime
(
pwiz::tradata
)
ridgeLine
RocDataPoint
(
pwiz::data::pepxml
)
Root
RootHandler
rtimeMap
RTMatches_Any
(
pwiz::analysis
)
RTMatches_Contains
(
pwiz::analysis
)
RTMatches_IsContainedIn
(
pwiz::analysis
)
Run
(
pwiz::msdata
)
RunSummary
(
pwiz::analysis
)
S
Same
(
pwiz::data::diff_impl
)
SameDeep
(
pwiz::data::diff_impl
)
Sample
(
pwiz::msdata
)
Sample
(
pwiz::identdata
)
SampleDatum
(
pwiz::data
)
SampledData
(
pwiz::math::MatchedFilter
)
SampleEnzyme
(
pwiz::data::pepxml
)
SamplingWith
(
ralab::base::resample
)
SavitzkyGolaySmoother
(
pwiz::analysis
)
saxstring
(
pwiz::minimxml::SAXParser
)
Scan
(
pwiz::data::peakdata
)
Scan
(
pwiz::msdata
)
ScanList
(
pwiz::msdata
)
ScanSettings
(
pwiz::msdata
)
ScanWindow
(
pwiz::msdata
)
PeakDetectorMatchedFilter::Score
(
pwiz::frequency
)
scoreChain
SearchDatabase
(
pwiz::data::pepxml
)
SearchDatabase
(
pwiz::identdata
)
SearchHit
(
pwiz::data::pepxml
)
SearchModification
(
pwiz::identdata
)
SearchResult
(
pwiz::data::pepxml
)
SearchScore
(
pwiz::data::pepxml
)
SearchSummary
(
pwiz::data::pepxml
)
Second
SecondHandler
SelectedIndexPredicate
SelectedIon
(
pwiz::msdata
)
seq_p
(
pwiz::identdata
)
SeqMinus
(
ralab::base::base::utilities
)
SeqPlus
(
ralab::base::base::utilities
)
sequence_p
(
pwiz::identdata
)
SequenceCollection
(
pwiz::identdata
)
Serializer_FASTA
(
pwiz::proteome
)
Serializer_MGF
(
pwiz::msdata
)
Serializer_MSn
(
pwiz::msdata
)
Serializer_mzIdentML
(
pwiz::identdata
)
Serializer_mzML
(
pwiz::msdata
)
Serializer_mzXML
(
pwiz::msdata
)
Serializer_pepXML
(
pwiz::identdata
)
Serializer_protXML
(
pwiz::identdata
)
Serializer_Text
(
pwiz::identdata
)
Serializer_traML
(
pwiz::tradata
)
SetRetentionTime
SHA1_ostream
(
pwiz::util
)
SHA1_WORKSPACE_BLOCK
SHA1Calculator
(
pwiz::util
)
SHA1Filter
(
pwiz::util
)
SHA1OutputObserver
(
pwiz::msdata
)
SHA1SymmetricFilter
(
pwiz::util
)
shared_map
(
pwiz::util
)
SpectrumIterator::Sieve
(
pwiz::msdata
)
Simple
SimpleAnalyzer
SimplePeakArea
(
ralab::base::ms
)
SimplePicker
(
ralab::base::ms
)
SimpleProgressCallback
Smoother
(
pwiz::analysis
)
Software
(
pwiz::data::peakdata
)
Software
(
pwiz::msdata
)
Software
(
pwiz::tradata
)
software_p
(
pwiz::identdata
)
SourceFile
(
pwiz::identdata
)
SourceFile
(
pwiz::msdata
)
Specificity
(
pwiz::data::pepxml
)
SpectraData
(
pwiz::identdata
)
Spectrum
(
pwiz::msdata
)
SpectrumBinaryData
(
pwiz::analysis
)
SpectrumDataFilter
(
pwiz::analysis
)
SpectrumIdentification
(
pwiz::identdata
)
SpectrumIdentificationItem
(
pwiz::identdata
)
SpectrumIdentificationList
(
pwiz::identdata
)
SpectrumIdentificationProtocol
(
pwiz::identdata
)
SpectrumIdentificationResult
(
pwiz::identdata
)
SpectrumIdentity
(
pwiz::msdata
)
SpectrumIdentityFromMzXML
(
pwiz::msdata
)
SpectrumIdentityFromXML
(
pwiz::msdata
)
SpectrumInfo
(
pwiz::msdata
)
SpectrumIterator
(
pwiz::msdata
)
SpectrumList
(
pwiz::msdata
)
SpectrumList_3D
(
pwiz::analysis
)
SpectrumList_ABI
(
pwiz::msdata::detail
)
SpectrumList_ABI_T2D
(
pwiz::msdata::detail
)
SpectrumList_Agilent
(
pwiz::msdata::detail
)
SpectrumList_Bruker
(
pwiz::msdata::detail
)
SpectrumList_BTDX
(
pwiz::msdata
)
SpectrumList_ChargeFromIsotope
(
pwiz::analysis
)
SpectrumList_ChargeStateCalculator
(
pwiz::analysis
)
SpectrumList_Demux
(
pwiz::analysis
)
SpectrumList_Filter
(
pwiz::analysis
)
SpectrumList_FilterPredicate_ActivationType
(
pwiz::analysis
)
SpectrumList_FilterPredicate_AnalyzerType
(
pwiz::analysis
)
SpectrumList_FilterPredicate_ChargeStateSet
(
pwiz::analysis
)
SpectrumList_FilterPredicate_DefaultArrayLengthSet
(
pwiz::analysis
)
SpectrumList_FilterPredicate_IdSet
(
pwiz::analysis
)
SpectrumList_FilterPredicate_IndexSet
(
pwiz::analysis
)
SpectrumList_FilterPredicate_MSLevelSet
(
pwiz::analysis
)
SpectrumList_FilterPredicate_MzPresent
(
pwiz::analysis
)
SpectrumList_FilterPredicate_Polarity
(
pwiz::analysis
)
SpectrumList_FilterPredicate_PrecursorMzSet
(
pwiz::analysis
)
SpectrumList_FilterPredicate_ScanEventSet
(
pwiz::analysis
)
SpectrumList_FilterPredicate_ScanNumberSet
(
pwiz::analysis
)
SpectrumList_FilterPredicate_ScanTimeRange
(
pwiz::analysis
)
SpectrumList_FilterPredicate_ThermoScanFilter
(
pwiz::analysis
)
SpectrumList_IonMobility
(
pwiz::analysis
)
SpectrumList_LockmassRefiner
(
pwiz::analysis
)
SpectrumList_MetadataFixer
(
pwiz::analysis
)
SpectrumList_MGF
(
pwiz::msdata
)
SpectrumList_MSn
(
pwiz::msdata
)
SpectrumList_mzML
(
pwiz::msdata
)
SpectrumList_MZRefiner
(
pwiz::analysis
)
SpectrumList_MZWindow
(
pwiz::analysis
)
SpectrumList_mzXML
(
pwiz::msdata
)
SpectrumList_PeakFilter
(
pwiz::analysis
)
SpectrumList_PeakPicker
(
pwiz::analysis
)
SpectrumList_PrecursorRecalculator
(
pwiz::analysis
)
SpectrumList_PrecursorRefine
(
pwiz::analysis
)
SpectrumList_ScanSummer
(
pwiz::analysis
)
SpectrumList_Shimadzu
(
pwiz::msdata::detail
)
SpectrumList_Smoother
(
pwiz::analysis
)
SpectrumList_Sorter
(
pwiz::analysis
)
SpectrumList_SorterPredicate_ScanStartTime
(
pwiz::analysis
)
SpectrumList_Thermo
(
pwiz::msdata::detail
)
SpectrumList_TitleMaker
(
pwiz::analysis
)
SpectrumList_UIMF
(
pwiz::msdata::detail
)
SpectrumList_UNIFI
(
pwiz::msdata::detail
)
SpectrumList_Waters
(
pwiz::msdata::detail
)
SpectrumList_ZeroSamplesFilter
(
pwiz::analysis
)
SpectrumListBase
(
pwiz::msdata
)
SpectrumListCache
(
pwiz::msdata
)
SpectrumListFactory
(
pwiz::analysis
)
SpectrumListIonMobilityBase
(
pwiz::msdata
)
SpectrumListSimple
(
pwiz::msdata
)
SpectrumListWrapper
(
pwiz::msdata
)
SpectrumPeakExtractor
(
pwiz::analysis
)
SpectrumPeakExtractorTest
SpectrumQuery
(
pwiz::data::pepxml
)
RegionAnalyzer::SpectrumStats
(
pwiz::analysis
)
SpectrumTable
(
pwiz::analysis
)
SpectrumWorkerThreads
(
pwiz::msdata
)
SquareRoot
(
ralab::base::resample
)
RegionAnalyzer::Stats
(
pwiz::analysis
)
Stats
(
pwiz::math
)
Handler::Status
(
pwiz::minimxml::SAXParser
)
StringMatchCVMap
(
pwiz::identdata
)
SubstitutionModification
(
pwiz::identdata
)
T
TabHandler
(
pwiz::util
)
TabReader
(
pwiz::util
)
TabularConfig
(
pwiz::analysis
)
Target
(
pwiz::msdata
)
Target
(
pwiz::tradata
)
TargetList
(
pwiz::tradata
)
Term
(
pwiz::data
)
TestAminoAcid
TestChargeStateCalculator
TestData
TestDatum
TestDeisotopeCalculator
TestDeisotoper
TestETDMassFilter
TestFormula
TestFragmentation
TestInfo
TestIterationListener
TestIterationListener_WithCancel
TestListener
TestMetadataFixer
TestModification
TestModifiedPeptide
TestMS2Denoise
TestOperator
TestOutputObserver
TestPair
TestPathmask
TestPathPredicate
(
pwiz::util
)
TestPeptide
TestReader
TestScanSummerCalculator
TestSpectrumInfo
TestThresholder
TextWriter
(
pwiz::tradata
)
TextWriter
(
pwiz::proteome
)
TextWriter
(
pwiz::msdata
)
TextWriter
(
pwiz::identdata
)
ThreadStatus
ThresholdFilter
(
pwiz::analysis
)
TimeIntensityPair
(
pwiz::msdata
)
Timer
(
pwiz::util
)
TraData
(
pwiz::tradata
)
TraDataFile
(
pwiz::tradata
)
Transition
(
pwiz::tradata
)
TranslationTable
(
pwiz::identdata
)
TruncatedLorentzian
(
pwiz::frequency
)
TruncatedLorentzianEstimator
(
pwiz::frequency
)
TruncatedLorentzianParameters
(
pwiz::frequency
)
U
IterationListener::UpdateMessage
(
pwiz::util
)
usage_exception
(
pwiz::util
)
user_error
(
pwiz::util
)
UserParam
(
pwiz::data
)
UserParamNameIs
V
Validation
(
pwiz::tradata
)
VectorFunction
(
pwiz::frequency::DerivativeTest
)
VectorTabHandler
(
pwiz::util
)
SpectrumList_Waters::VendorOptions
(
pwiz::msdata::detail
)
Version
(
pwiz::analysis
)
Version
(
pwiz::identdata
)
Version
(
pwiz::msdata
)
Version
(
pwiz::proteome
)
Version
(
pwiz::tradata
)
Version
(
pwiz
)
virtual_map
(
pwiz::util
)
W
WhittakerSmoother
(
pwiz::analysis
)
IdentDataFile::WriteConfig
(
pwiz::identdata
)
MSDataFile::WriteConfig
(
pwiz::msdata
)
ProteomeDataFile::WriteConfig
(
pwiz::proteome
)
TraDataFile::WriteConfig
(
pwiz::tradata
)
WriteCVParam
X
XMLWriter
(
pwiz::minimxml
)
Z
ZeroSampleFiller
(
pwiz::analysis
)
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