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pwiz::msdata::ChromatogramListBase Class Reference

common functionality for base ChromatogramList implementations More...

#include <ChromatogramListBase.hpp>

Inheritance diagram for pwiz::msdata::ChromatogramListBase:
pwiz::msdata::ChromatogramList MyBase pwiz::msdata::ChromatogramList_mzML pwiz::msdata::detail::ChromatogramList_ABI pwiz::msdata::detail::ChromatogramList_Agilent pwiz::msdata::detail::ChromatogramList_Bruker pwiz::msdata::detail::ChromatogramList_Shimadzu pwiz::msdata::detail::ChromatogramList_Thermo pwiz::msdata::detail::ChromatogramList_Waters

Public Member Functions

virtual const boost::shared_ptr< const DataProcessingdataProcessingPtr () const
 implementation of ChromatogramList
 
virtual void setDataProcessingPtr (DataProcessingPtr dp)
 set DataProcessing
 
const char * polarityStringForFilter (CVID polarityType) const
 
- Public Member Functions inherited from pwiz::msdata::ChromatogramList
virtual size_t size () const =0
 returns the number of chromatograms
 
bool empty () const
 returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL)
 
virtual const ChromatogramIdentitychromatogramIdentity (size_t index) const =0
 access to a chromatogram index
 
virtual size_t find (const std::string &id) const
 find id in the chromatogram index (returns size() on failure)
 
virtual ChromatogramPtr chromatogram (size_t index, bool getBinaryData=false) const =0
 retrieve a chromatogram by index
 
virtual ~ChromatogramList ()
 

Protected Attributes

DataProcessingPtr dp_
 

Detailed Description

common functionality for base ChromatogramList implementations

Definition at line 37 of file ChromatogramListBase.hpp.

Member Function Documentation

◆ dataProcessingPtr()

virtual const boost::shared_ptr< const DataProcessing > pwiz::msdata::ChromatogramListBase::dataProcessingPtr ( ) const
inlinevirtual

implementation of ChromatogramList

Reimplemented from pwiz::msdata::ChromatogramList.

Reimplemented in MyBase.

Definition at line 42 of file ChromatogramListBase.hpp.

42{return dp_;}

◆ setDataProcessingPtr()

virtual void pwiz::msdata::ChromatogramListBase::setDataProcessingPtr ( DataProcessingPtr  dp)
inlinevirtual

set DataProcessing

Definition at line 45 of file ChromatogramListBase.hpp.

45{dp_ = dp;}

Referenced by hackInMemoryMSData(), and test().

◆ polarityStringForFilter()

const char * pwiz::msdata::ChromatogramListBase::polarityStringForFilter ( CVID  polarityType) const
inline

Definition at line 47 of file ChromatogramListBase.hpp.

48 {
49 return (polarityType == MS_negative_scan) ? "- " : ""; // For backward compatibility, let assumptions about postive ion mode remain
50 }
MS_negative_scan
negative scan: Polarity of the scan is negative.
Definition cv.hpp:735

References MS_negative_scan.

Member Data Documentation

◆ dp_

DataProcessingPtr pwiz::msdata::ChromatogramListBase::dp_
protected

Definition at line 54 of file ChromatogramListBase.hpp.

Referenced by MyBase::dataProcessingPtr().


The documentation for this class was generated from the following file: