ProteoWizard
Functions
ProteomeDataTest.cpp File Reference
#include "ProteomeData.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "pwiz/utility/misc/Std.hpp"

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Functions

void testProteinListSimple ()
 
int main (int argc, char *argv[])
 

Function Documentation

◆ testProteinListSimple()

void testProteinListSimple ( )

Definition at line 31 of file ProteomeDataTest.cpp.

32{
33 // fill in ProteinListSimple
34
35 shared_ptr<ProteinListSimple> proteinListSimple(new ProteinListSimple);
36
37 unit_assert(proteinListSimple->empty());
38
39 Protein emptyProtein("", 0, "", "");
40 unit_assert(emptyProtein.empty());
41
42 ProteinPtr protein0(new Protein("IPI-1701", 0, "The final frontier!", ""));
43 ProteinPtr protein1(new Protein("SPROT|42", 1, "Life, the universe, and everything.", ""));
44
45 unit_assert(!protein0->empty());
46
47 proteinListSimple->proteins.push_back(protein0);
48 proteinListSimple->proteins.push_back(protein1);
49
50 // let a ProteomeData object hold onto it as a ProteinListPtr
51
52 ProteomeData data;
53 data.proteinListPtr = proteinListSimple;
54
55 // test ProteinList interface
56
57 // verify index()
58 const ProteinList& proteinList = *data.proteinListPtr;
59 unit_assert(proteinList.size() == 2);
60 unit_assert(proteinList.find("IPI-1701") == 0);
61 unit_assert(proteinList.find("SPROT|42") == 1);
62
63 // verify findKeyword
64 IndexList result = proteinList.findKeyword("final");
65 unit_assert(result.size()==1 && result[0]==0);
66
67 result = proteinList.findKeyword("the", false);
68 unit_assert(result.size()==2 && result[0]==0 && result[1]==1);
69
70 result = proteinList.findKeyword("the");
71 unit_assert(result.size()==1 && result[0]==1);
72
73 result = proteinList.findKeyword("42");
74 unit_assert(result.empty());
75
76 // verify protein 0
77 ProteinPtr protein = proteinList.protein(0);
78 unit_assert(protein->index == protein0->index);
79 unit_assert(protein->id == protein0->id);
80
81 // verify spectrum 1
82 protein = proteinList.protein(1);
83 unit_assert(protein->index == protein1->index);
84 unit_assert(protein->id == protein1->id);
85}
virtual ProteinPtr protein(size_t index, bool getSequence=true) const =0
virtual IndexList findKeyword(const std::string &keyword, bool caseSensitive=true) const
virtual size_t find(const std::string &id) const
virtual size_t size() const =0
boost::shared_ptr< Protein > ProteinPtr
#define unit_assert(x)
Definition unit.hpp:85

References pwiz::proteome::Protein::empty(), pwiz::proteome::ProteinList::find(), pwiz::proteome::ProteinList::findKeyword(), pwiz::proteome::ProteinList::protein(), pwiz::proteome::ProteomeData::proteinListPtr, pwiz::proteome::ProteinList::size(), and unit_assert.

Referenced by main().

◆ main()

int main ( int  argc,
char *  argv[] 
)

Definition at line 88 of file ProteomeDataTest.cpp.

89{
90 TEST_PROLOG(argc, argv)
91
92 try
93 {
95 }
96 catch (exception& e)
97 {
98 TEST_FAILED(e.what())
99 }
100 catch (...)
101 {
102 TEST_FAILED("Caught unknown exception.")
103 }
104
106}
void testProteinListSimple()
#define TEST_EPILOG
Definition unit.hpp:183
#define TEST_FAILED(x)
Definition unit.hpp:177
#define TEST_PROLOG(argc, argv)
Definition unit.hpp:175

References TEST_EPILOG, TEST_FAILED, TEST_PROLOG, and testProteinListSimple().