Constructor and Description |
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BoundingBox(LayoutPkgNamespaces layoutns)
Creates a new
BoundingBox object with the given LayoutPkgNamespaces object. |
BoundingBox(LayoutPkgNamespaces layoutns,
String id)
Constructor set position and dimensions to (0.0,0.0,0.0) and the id to
a copy of the given string.
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BoundingBox(LayoutPkgNamespaces layoutns,
String id,
double x,
double y,
double width,
double height)
Constructor which sets the id, the coordinates and the dimensions to
the given 2D values.
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BoundingBox(LayoutPkgNamespaces layoutns,
String id,
double x,
double y,
double z,
double width,
double height,
double depth)
Constructor which sets the id, the coordinates and the dimensions to
the given 3D values.
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BoundingBox(LayoutPkgNamespaces layoutns,
String id,
Point p,
Dimensions d)
Constructor which sets the id, the coordinates and the dimensions to
the given values.
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CompartmentGlyph(LayoutPkgNamespaces layoutns)
Ctor.
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CompartmentGlyph(LayoutPkgNamespaces layoutns,
String id)
Constructor which creates a new
CompartmentGlyph with the given id . |
CompartmentGlyph(LayoutPkgNamespaces layoutns,
String id,
String compartmentId)
Constructor which creates a new
CompartmentGlyph . |
CubicBezier(LayoutPkgNamespaces layoutns)
Ctor.
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CubicBezier(LayoutPkgNamespaces layoutns,
double x1,
double y1,
double x2,
double y2)
Creates a
CubicBezier with the given 2D coordinates and returns the
pointer. |
CubicBezier(LayoutPkgNamespaces layoutns,
double x1,
double y1,
double z1,
double x2,
double y2,
double z2)
Creates a
CubicBezier with the given 3D coordinates and returns the
pointer. |
CubicBezier(LayoutPkgNamespaces layoutns,
Point start,
Point end)
Creates a
CubicBezier with the given points and returns the pointer. |
CubicBezier(LayoutPkgNamespaces layoutns,
Point start,
Point base1,
Point base2,
Point end)
Creates a
CubicBezier with the given points and returns the pointer. |
Curve(LayoutPkgNamespaces layoutns)
Creates a new
Curve with the given LayoutPkgNamespaces object. |
Dimensions(LayoutPkgNamespaces layoutns)
Creates a new
Dimensions object with the given LayoutPkgNamespaces object. |
Dimensions(LayoutPkgNamespaces layoutns,
double w,
double h)
Creates a new
Dimensions object with the given sizes. |
Dimensions(LayoutPkgNamespaces layoutns,
double w,
double h,
double d)
Creates a new
Dimensions object with the given sizes. |
GeneralGlyph(LayoutPkgNamespaces layoutns)
Creates a new
GeneralGlyph with the given LayoutPkgNamespaces object. |
GeneralGlyph(LayoutPkgNamespaces layoutns,
String id)
Creates a glyph with the given
LayoutPkgNamespaces and id. |
GeneralGlyph(LayoutPkgNamespaces layoutns,
String id,
String referenceId)
Creates a glyph with the given
LayoutPkgNamespaces , id and set the id of the
associated element to the second argument. |
GraphicalObject(LayoutPkgNamespaces layoutns)
Creates a new
GraphicalObject with the given LayoutPkgNamespaces |
GraphicalObject(LayoutPkgNamespaces layoutns,
String id)
Creates a new
GraphicalObject with the given id . |
GraphicalObject(LayoutPkgNamespaces layoutns,
String id,
BoundingBox bb)
Creates a new
GraphicalObject with the given id and 3D coordinates for
the bounding box. |
GraphicalObject(LayoutPkgNamespaces layoutns,
String id,
double x,
double y,
double w,
double h)
Creates a new
GraphicalObject with the given id and 2D coordinates for
the bounding box. |
GraphicalObject(LayoutPkgNamespaces layoutns,
String id,
double x,
double y,
double z,
double w,
double h,
double d)
Creates a new
GraphicalObject with the given id and 3D coordinates for
the bounding box. |
GraphicalObject(LayoutPkgNamespaces layoutns,
String id,
Point p,
Dimensions d)
Creates a new
GraphicalObject with the given id and 3D coordinates for
the bounding box. |
Layout(LayoutPkgNamespaces layoutns)
Creates a new
Layout with the given LayoutPkgNamespaces object. |
Layout(LayoutPkgNamespaces layoutns,
String id,
Dimensions dimensions)
Creates a new
Layout with the given id and dimensions. |
LayoutModelPlugin(String uri,
String prefix,
LayoutPkgNamespaces layoutns)
Constructor
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LayoutPkgNamespaces(LayoutPkgNamespaces orig) |
LayoutSpeciesReferencePlugin(String uri,
String prefix,
LayoutPkgNamespaces layoutns)
Constructor
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LineSegment(LayoutPkgNamespaces layoutns)
Creates a line segment with the
LayoutPkgNamespaces and both points set to (0.0,0.0,0.0) |
LineSegment(LayoutPkgNamespaces layoutns,
double x1,
double y1,
double x2,
double y2)
Creates a new line segment with the given 2D coordinates.
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LineSegment(LayoutPkgNamespaces layoutns,
double x1,
double y1,
double z1,
double x2,
double y2,
double z2)
Creates a new line segment with the given 3D coordinates.
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LineSegment(LayoutPkgNamespaces layoutns,
Point start,
Point end)
Creates a new line segment with the two given points.
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ListOfCompartmentGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
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ListOfGraphicalObjects(LayoutPkgNamespaces layoutns)
Ctor.
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ListOfLayouts(LayoutPkgNamespaces layoutns)
Ctor.
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ListOfLineSegments(LayoutPkgNamespaces layoutns)
Ctor.
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ListOfReactionGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
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ListOfReferenceGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
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ListOfSpeciesGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
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ListOfSpeciesReferenceGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
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ListOfTextGlyphs(LayoutPkgNamespaces layoutns)
Ctor.
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Point(LayoutPkgNamespaces layoutns)
Ctor.
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Point(LayoutPkgNamespaces layoutns,
double x,
double y)
Creates a new point with the given coordinates.
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Point(LayoutPkgNamespaces layoutns,
double x,
double y,
double z)
Creates a new point with the given coordinates.
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ReactionGlyph(LayoutPkgNamespaces layoutns)
Creates a new
ReactionGlyph with the given LayoutPkgNamespaces object. |
ReactionGlyph(LayoutPkgNamespaces layoutns,
String id)
Creates a ResctionGlyph with the given
LayoutPkgNamespaces and id. |
ReactionGlyph(LayoutPkgNamespaces layoutns,
String id,
String reactionId)
Creates a ResctionGlyph with the given
LayoutPkgNamespaces , id and set the id of the
associated reaction to the second argument. |
ReferenceGlyph(LayoutPkgNamespaces layoutns)
Ctor.
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ReferenceGlyph(LayoutPkgNamespaces layoutns,
String sid,
String glyphId,
String referenceId,
String role)
Creates a new
ReferenceGlyph . |
SpeciesGlyph(LayoutPkgNamespaces layoutns)
Ctor.
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SpeciesGlyph(LayoutPkgNamespaces layoutns,
String id)
Creates a new
SpeciesGlyph with the given id . |
SpeciesGlyph(LayoutPkgNamespaces layoutns,
String id,
String speciesId)
Creates a new
SpeciesGlyph with the given id and the id of the
associated species object set to the second argument. |
SpeciesReferenceGlyph(LayoutPkgNamespaces layoutns)
Ctor.
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SpeciesReferenceGlyph(LayoutPkgNamespaces layoutns,
String sid,
String speciesGlyphId,
String speciesReferenceId,
int role)
Creates a new
SpeciesReferenceGlyph . |
TextGlyph(LayoutPkgNamespaces layoutns)
Ctor.
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TextGlyph(LayoutPkgNamespaces layoutns,
String id)
Creates a new
TextGlyph . |
TextGlyph(LayoutPkgNamespaces layoutns,
String id,
String text)
Creates a new
TextGlyph . |