18 #include "ReadFiles.h"
19 #include "WriteFiles.h"
20 #include "ValidationTest.h"
21 #include "BamIndexTest.h"
22 #include "ModifyVar.h"
24 #include "SamFileTest.h"
25 #include "TestEquals.h"
26 #include "TestFilter.h"
27 #include "ShiftIndels.h"
28 #include "TestPileup.h"
29 #include "TestPosList.h"
30 #include "TestCigarHelper.h"
31 #include "TestSamRecordPool.h"
32 #include "TestSamCoordOutput.h"
33 #include "TestSamRecordHelper.h"
35 int main(
int argc,
char ** argv)
40 #ifdef __ZLIB_AVAILABLE__
44 testAddHeaderAndTagToFile(
"testFiles/testSam.sam",
45 "results/addedTagToSam.bam");
46 testAddHeaderAndTagToFile(
"testFiles/testSam.sam",
47 "results/addedTagToSam.sam");
49 #ifdef __ZLIB_AVAILABLE__
50 testAddHeaderAndTagToFile(
"testFiles/testBam.bam",
51 "results/addedTagToBam.sam");
52 testAddHeaderAndTagToFile(
"testFiles/testBam.bam",
53 "results/addedTagToBam.bam");
56 testValidateSortedRead();
65 #ifdef __ZLIB_AVAILABLE__
87 testSamRecordHelper();
91 modifyFirstBaseLong();