OpenMS
2.4.0
OpenMS
FORMAT
ExperimentalDesignFile.h
Go to the documentation of this file.
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// --------------------------------------------------------------------------
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// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// * Neither the name of any author or any participating institution
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// may be used to endorse or promote products derived from this software
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// without specific prior written permission.
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// For a full list of authors, refer to the file AUTHORS.
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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//
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// --------------------------------------------------------------------------
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// $Maintainer: Timo Sachsenberg $
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// $Authors: Timo Sachsenberg, Lukas Zimmermann $
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// --------------------------------------------------------------------------
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#pragma once
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#include <
OpenMS/DATASTRUCTURES/String.h
>
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#include <map>
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namespace
OpenMS
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{
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class
ExperimentalDesign;
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class
OPENMS_DLLAPI
ExperimentalDesignFile
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{
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public
:
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static
ExperimentalDesign
load(
const
String
&tsv_file,
bool
require_spectra_files);
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private
:
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static
void
parseHeader_(
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const
StringList
&header,
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const
String
&filename,
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std::map <String, Size> &column_map,
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const
std::set <String> &required,
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const
std::set <String> &optional,
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bool
allow_other_header);
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};
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}
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OpenMS::ExperimentalDesignFile
Provides means to load an ExperimentalDesign from a TSV file.
Definition:
ExperimentalDesignFile.h:108
OpenMS::ExperimentalDesign
Representation of the Experimental Design in OpenMS. Instances can be loaded via the ExperimentalDesi...
Definition:
ExperimentalDesign.h:85
OpenMS::String
A more convenient string class.
Definition:
String.h:57
OpenMS
Main OpenMS namespace.
Definition:
FeatureDeconvolution.h:46
OpenMS::StringList
std::vector< String > StringList
Vector of String.
Definition:
ListUtils.h:73
String.h
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