Package picard.fingerprint
Class ClusteredCrosscheckMetric
- java.lang.Object
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- htsjdk.samtools.metrics.MetricBase
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- picard.fingerprint.CrosscheckMetric
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- picard.fingerprint.ClusteredCrosscheckMetric
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public class ClusteredCrosscheckMetric extends CrosscheckMetric
A metric class to hold the result ofClusterCrosscheckMetrics
fingerprints.
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Nested Class Summary
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Nested classes/interfaces inherited from class picard.fingerprint.CrosscheckMetric
CrosscheckMetric.DataType, CrosscheckMetric.FingerprintResult
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Field Summary
Fields Modifier and Type Field Description Integer
CLUSTER
The cluster identifier to which the two groups within this metric (CrosscheckMetric.LEFT_GROUP_VALUE
andCrosscheckMetric.RIGHT_GROUP_VALUE
) belong.Integer
CLUSTER_SIZE
The number of different groups that are assigned to this cluster.-
Fields inherited from class picard.fingerprint.CrosscheckMetric
DATA_TYPE, LEFT_FILE, LEFT_GROUP_VALUE, LEFT_LANE, LEFT_LIBRARY, LEFT_MOLECULAR_BARCODE_SEQUENCE, LEFT_RUN_BARCODE, LEFT_SAMPLE, LOD_SCORE, LOD_SCORE_NORMAL_TUMOR, LOD_SCORE_TUMOR_NORMAL, RESULT, RIGHT_FILE, RIGHT_GROUP_VALUE, RIGHT_LANE, RIGHT_LIBRARY, RIGHT_MOLECULAR_BARCODE_SEQUENCE, RIGHT_RUN_BARCODE, RIGHT_SAMPLE
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Constructor Summary
Constructors Constructor Description ClusteredCrosscheckMetric()
ClusteredCrosscheckMetric(CrosscheckMetric metric)
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Field Detail
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CLUSTER
public Integer CLUSTER
The cluster identifier to which the two groups within this metric (CrosscheckMetric.LEFT_GROUP_VALUE
andCrosscheckMetric.RIGHT_GROUP_VALUE
) belong.
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Constructor Detail
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ClusteredCrosscheckMetric
public ClusteredCrosscheckMetric()
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ClusteredCrosscheckMetric
public ClusteredCrosscheckMetric(CrosscheckMetric metric)
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