Package picard.sam.SamErrorMetric
Class BaseErrorCalculator
- java.lang.Object
-
- picard.sam.SamErrorMetric.BaseErrorCalculator
-
- All Implemented Interfaces:
BaseCalculator
- Direct Known Subclasses:
OverlappingReadsErrorCalculator
,SimpleErrorCalculator
public abstract class BaseErrorCalculator extends Object implements BaseCalculator
-
-
Constructor Summary
Constructors Constructor Description BaseErrorCalculator()
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addBase(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusAndRef)
the function by which new loci are "shown" to the calculator-
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
-
Methods inherited from interface picard.sam.SamErrorMetric.BaseCalculator
getMetric, getSuffix
-
-
-
-
Method Detail
-
addBase
public void addBase(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusAndRef)
the function by which new loci are "shown" to the calculator- Specified by:
addBase
in interfaceBaseCalculator
-
-