Package picard.analysis
Interface WgsMetricsProcessor
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- All Known Implementing Classes:
WgsMetricsProcessorImpl
public interface WgsMetricsProcessor
Interface for processing data and generate result for CollectWgsMetrics
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description void
addToMetricsFile(htsjdk.samtools.metrics.MetricsFile<CollectWgsMetrics.WgsMetrics,Integer> file, boolean includeBQHistogram, CountingFilter dupeFilter, CountingFilter mapqFilter, CountingPairedFilter pairFilter)
Adds result metric's data to input filevoid
processFile()
Method processes the input data and accumulates result data
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Method Detail
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processFile
void processFile()
Method processes the input data and accumulates result data
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addToMetricsFile
void addToMetricsFile(htsjdk.samtools.metrics.MetricsFile<CollectWgsMetrics.WgsMetrics,Integer> file, boolean includeBQHistogram, CountingFilter dupeFilter, CountingFilter mapqFilter, CountingPairedFilter pairFilter)
Adds result metric's data to input file- Parameters:
file
- MetricsFile for result of collector's workincludeBQHistogram
- include base quality histogramdupeFilter
- counting filter for duplicate readsmapqFilter
- counting filter for mapping qualitypairFilter
- counting filter for reads without a mapped mate pair
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