Package picard.vcf.processor
Class VcfFileSegmentGenerator
java.lang.Object
picard.vcf.processor.VcfFileSegmentGenerator
Deprecated.
Describes a mechanism for producing
VcfFileSegment
s from a VCF file.-
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic VcfFileSegmentGenerator
byWholeContigSubdividingWithWidth
(long segmentWidth) Deprecated.static <T> VcfFileSegmentGenerator
excludingNonOverlaps
(VcfFileSegmentGenerator strategy, htsjdk.samtools.util.OverlapDetector<T> overlaps) Deprecated.Returns a decoratedVcfFileSegmentGenerator
that filters outVcfFileSegment
s that have no overlap with the providedOverlapDetector
.abstract Iterable
<VcfFileSegment> Deprecated.
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Constructor Details
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VcfFileSegmentGenerator
public VcfFileSegmentGenerator()Deprecated.
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Method Details
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forVcf
Deprecated. -
byWholeContigSubdividingWithWidth
Deprecated. -
excludingNonOverlaps
public static <T> VcfFileSegmentGenerator excludingNonOverlaps(VcfFileSegmentGenerator strategy, htsjdk.samtools.util.OverlapDetector<T> overlaps) Deprecated.Returns a decoratedVcfFileSegmentGenerator
that filters outVcfFileSegment
s that have no overlap with the providedOverlapDetector
.
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VcfPathSegmentGenerator