Class ConvertHaplotypeDatabaseToVcf

java.lang.Object
picard.cmdline.CommandLineProgram
picard.fingerprint.ConvertHaplotypeDatabaseToVcf

public class ConvertHaplotypeDatabaseToVcf extends CommandLineProgram
  • Field Details

    • INPUT

      @Argument(doc="Haplotype database to be converted to VCF.", shortName="I") public File INPUT
    • OUTPUT

      @Argument(doc="Where to write converted haplotype database VCF.", shortName="O") public File OUTPUT
  • Constructor Details

    • ConvertHaplotypeDatabaseToVcf

      public ConvertHaplotypeDatabaseToVcf()
  • Method Details

    • requiresReference

      protected boolean requiresReference()
      Overrides:
      requiresReference in class CommandLineProgram
    • doWork

      protected int doWork()
      Description copied from class: CommandLineProgram
      Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
      Specified by:
      doWork in class CommandLineProgram
      Returns:
      program exit status.