Package picard.arrays
Class BafRegressMetrics
java.lang.Object
htsjdk.samtools.metrics.MetricBase
picard.arrays.BafRegressMetrics
@DocumentedFeature(groupName="Metrics",
summary="Metrics")
public class BafRegressMetrics
extends htsjdk.samtools.metrics.MetricBase
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Field Summary
FieldsModifier and TypeFieldDescriptiondouble
The call rate of the sample (number of non-missing genotypes)double
The estimate of contamination from the model (on the 0.0-1.0 scale)double
The log p-value of the estimateint
The number of homozygous genotypes used to fit the modeldouble
The p-value of the estimateThe sample namedouble
The standard error of the estimatedouble
The test statistic for the estimate -
Constructor Summary
Constructors -
Method Summary
Methods inherited from class htsjdk.samtools.metrics.MetricBase
equals, hashCode, toString
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Field Details
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SAMPLE
The sample name -
ESTIMATE
public double ESTIMATEThe estimate of contamination from the model (on the 0.0-1.0 scale) -
STDERR
public double STDERRThe standard error of the estimate -
TVAL
public double TVALThe test statistic for the estimate -
PVAL
public double PVALThe p-value of the estimate -
LOG10_PVAL
public double LOG10_PVALThe log p-value of the estimate -
CALL_RATE
public double CALL_RATEThe call rate of the sample (number of non-missing genotypes) -
NHOM
public int NHOMThe number of homozygous genotypes used to fit the model
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Constructor Details
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BafRegressMetrics
public BafRegressMetrics()
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