Class CollectQualityYieldMetrics.QualityYieldMetricsFlow

java.lang.Object
htsjdk.samtools.metrics.MetricBase
picard.analysis.MergeableMetricBase
picard.analysis.CollectQualityYieldMetrics.QualityYieldMetrics
picard.analysis.CollectQualityYieldMetrics.QualityYieldMetricsFlow
Enclosing class:
CollectQualityYieldMetrics

public static class CollectQualityYieldMetrics.QualityYieldMetricsFlow extends CollectQualityYieldMetrics.QualityYieldMetrics
  • Field Details

    • READ_LENGTH_AVG_Q_ABOVE_30

      public long READ_LENGTH_AVG_Q_ABOVE_30
      The length of the longest interval on the reads where the average quality per-base is above (Q30)
    • READ_LENGTH_AVG_Q_ABOVE_25

      public long READ_LENGTH_AVG_Q_ABOVE_25
      The length of the longest interval on the reads where the average quality per-base is above (Q25)
    • histogramGenerator

      protected final picard.analysis.HistogramGenerator histogramGenerator
  • Constructor Details

    • QualityYieldMetricsFlow

      public QualityYieldMetricsFlow()
    • QualityYieldMetricsFlow

      public QualityYieldMetricsFlow(boolean useOriginalBaseQualities)
    • QualityYieldMetricsFlow

      public QualityYieldMetricsFlow(boolean useOriginalBaseQualities, picard.analysis.HistogramGenerator hg)
  • Method Details