Package picard.filter
Class CountingPairedFilter
java.lang.Object
picard.filter.CountingFilter
picard.filter.CountingPairedFilter
- All Implemented Interfaces:
htsjdk.samtools.filter.SamRecordFilter
Counting filter that discards reads that are unpaired in sequencing and paired reads whose mates are not mapped.
-
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionboolean
reallyFilterOut
(htsjdk.samtools.SAMRecord record) Return true if we are to filter this record out, false otherwise.Methods inherited from class picard.filter.CountingFilter
filterOut, filterOut, getFilteredBases, getFilteredRecords
-
Constructor Details
-
CountingPairedFilter
public CountingPairedFilter()
-
-
Method Details
-
reallyFilterOut
public boolean reallyFilterOut(htsjdk.samtools.SAMRecord record) Description copied from class:CountingFilter
Return true if we are to filter this record out, false otherwise.- Specified by:
reallyFilterOut
in classCountingFilter
-