Package picard.arrays.illumina
Class IlluminaManifestRecord
java.lang.Object
picard.arrays.illumina.IlluminaManifestRecord
- Direct Known Subclasses:
Build37ExtendedIlluminaManifestRecord
A class to represent a record (line) from an Illumina Manifest [Assay] entry
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Nested Class Summary
Nested Classes -
Field Summary
Fields -
Method Summary
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Field Details
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ILLUMINA_FLAGGED_BAD_CHR
- See Also:
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Method Details
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getLine
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getIlmnId
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getName
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getIlmnStrand
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getSnp
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isIndel
public boolean isIndel() -
isAmbiguous
public boolean isAmbiguous() -
isSnp
public boolean isSnp() -
getAddressAId
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getAlleleAProbeSeq
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getAddressBId
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getAlleleBProbeSeq
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getGenomeBuild
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getMajorGenomeBuild
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getHgGenomeBuild
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setHgGenomeBuild
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getChr
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getPosition
public int getPosition() -
getPloidy
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getSpecies
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getSource
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getSourceVersion
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getSourceStrand
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getSourceSeq
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getTopGenomicSeq
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getBeadSetId
public int getBeadSetId() -
getExpClusters
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getRefStrand
public htsjdk.tribble.annotation.Strand getRefStrand() -
getIntensityOnly
public boolean getIntensityOnly() -
getIndex
public int getIndex() -
toString
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