Class RequiredReferenceArgumentCollection
java.lang.Object
picard.cmdline.argumentcollections.RequiredReferenceArgumentCollection
- All Implemented Interfaces:
ReferenceArgumentCollection
public class RequiredReferenceArgumentCollection
extends Object
implements ReferenceArgumentCollection
Argument collection for references that are required (and not common).
-
Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
-
Field Details
-
REFERENCE_SEQUENCE
@Argument(shortName="R", doc="Reference sequence file.", common=false) public File REFERENCE_SEQUENCE
-
-
Constructor Details
-
RequiredReferenceArgumentCollection
public RequiredReferenceArgumentCollection()
-
-
Method Details
-
getReferenceFile
- Specified by:
getReferenceFile
in interfaceReferenceArgumentCollection
- Returns:
- The reference provided by the user.
-