Package picard.util.IntervalList
Class IntervalListScattererByIntervalCountWithDistributedRemainder
java.lang.Object
picard.util.IntervalList.IntervalListScattererByIntervalCount
picard.util.IntervalList.IntervalListScattererByIntervalCountWithDistributedRemainder
- All Implemented Interfaces:
IntervalListScatterer
public class IntervalListScattererByIntervalCountWithDistributedRemainder
extends IntervalListScattererByIntervalCount
Scatters
IntervalList
by into `interval count` shards so that resulting IntervalList
's have
approximately same number of intervals in them. The "remainder" intervals are distributed over the last lists.-
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionList
<htsjdk.samtools.util.Interval> takeSome
(htsjdk.samtools.util.Interval interval, long idealSplitWeight, long currentSize, double projectSizeOfRemaining) Figure out how much of the input interval to put into current list and how much to leave for the next interval list.Methods inherited from class picard.util.IntervalList.IntervalListScattererByIntervalCount
deduceIdealSplitWeight, intervalWeight, listWeight
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface picard.util.IntervalList.IntervalListScatterer
preprocessIntervalList, scatter
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Constructor Details
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IntervalListScattererByIntervalCountWithDistributedRemainder
public IntervalListScattererByIntervalCountWithDistributedRemainder()
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Method Details
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takeSome
public List<htsjdk.samtools.util.Interval> takeSome(htsjdk.samtools.util.Interval interval, long idealSplitWeight, long currentSize, double projectSizeOfRemaining) Description copied from interface:IntervalListScatterer
Figure out how much of the input interval to put into current list and how much to leave for the next interval list.- Specified by:
takeSome
in interfaceIntervalListScatterer
- Overrides:
takeSome
in classIntervalListScattererByIntervalCount
- Parameters:
interval
-- Returns:
- a list of two (possibly null) elements. The first element should be added to the current interval list, the second should be offered to the next interval list.
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