Package picard.sam

Class CleanSam


@DocumentedFeature public class CleanSam extends CommandLineProgram
  • Field Details

    • INPUT

      @Argument(shortName="I", doc="Input SAM/BAM/CRAM file to be cleaned.") public File INPUT
    • OUTPUT

      @Argument(shortName="O", doc="Where to write cleaned file.") public File OUTPUT
  • Constructor Details

    • CleanSam

      public CleanSam()
  • Method Details

    • doWork

      protected int doWork()
      Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
      Specified by:
      doWork in class CommandLineProgram
      Returns:
      program exit status.