Package picard.filter

Class CountingPairedFilter

java.lang.Object
picard.filter.CountingFilter
picard.filter.CountingPairedFilter
All Implemented Interfaces:
htsjdk.samtools.filter.SamRecordFilter

public class CountingPairedFilter extends CountingFilter
Counting filter that discards reads that are unpaired in sequencing and paired reads whose mates are not mapped.
  • Constructor Details

    • CountingPairedFilter

      public CountingPairedFilter()
  • Method Details

    • reallyFilterOut

      public boolean reallyFilterOut(htsjdk.samtools.SAMRecord record)
      Description copied from class: CountingFilter
      Return true if we are to filter this record out, false otherwise.
      Specified by:
      reallyFilterOut in class CountingFilter