Hierarchy For Package picard.vcf
Class Hierarchy
- java.lang.Object
- picard.vcf.ByIntervalListVariantContextIterator (implements java.util.Iterator<E>)
- picard.vcf.CallingMetricAccumulator (implements picard.vcf.processor.VariantProcessor.Accumulator<RESULT>)
- picard.vcf.GvcfMetricAccumulator
- picard.vcf.CallingMetricAccumulator.Result
- picard.cmdline.CommandLineProgram
- picard.vcf.AccumulateVariantCallingMetrics
- picard.vcf.CollectVariantCallingMetrics
- picard.vcf.FixVcfHeader
- picard.vcf.GatherVcfs
- picard.vcf.GenotypeConcordance
- picard.vcf.LiftoverVcf
- picard.vcf.MakeSitesOnlyVcf
- picard.vcf.MakeVcfSampleNameMap
- picard.vcf.MergeVcfs
- picard.vcf.RenameSampleInVcf
- picard.vcf.SortVcf
- picard.vcf.SplitVcfs
- picard.vcf.UpdateVcfSequenceDictionary
- picard.vcf.VcfFormatConverter
- picard.vcf.VcfToIntervalList
- picard.vcf.GenotypeConcordance.Alleles
- picard.vcf.GenotypeConcordanceCounts
- picard.vcf.GenotypeConcordanceScheme
- picard.vcf.GA4GHScheme
- picard.vcf.GA4GHSchemeWithMissingAsHomRef
- picard.vcf.GenotypeConcordanceSchemeFactory
- picard.vcf.GenotypeConcordanceStates
- picard.vcf.GenotypeConcordanceStates.TruthAndCallStates (implements java.lang.Comparable<T>)
- htsjdk.samtools.metrics.MetricBase
- picard.vcf.GenotypeConcordanceContingencyMetrics
- picard.vcf.GenotypeConcordanceDetailMetrics
- picard.vcf.GenotypeConcordanceSummaryMetrics
- picard.analysis.MergeableMetricBase
- picard.vcf.PairedVariantSubContextIterator (implements java.util.Iterator<E>)
- picard.vcf.PairedVariantSubContextIterator.VcfTuple
- picard.vcf.VcfUtils
Enum Class Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
- picard.vcf.GenotypeConcordanceStateCodes
- picard.vcf.GenotypeConcordanceStates.CallState
- picard.vcf.GenotypeConcordanceStates.ContingencyState
- picard.vcf.GenotypeConcordanceStates.TruthState
- picard.vcf.VcfToIntervalList.VARIANT_ID_TYPES
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)