Interface ReferenceArgumentCollection

All Known Implementing Classes:
CollectAlignmentSummaryMetrics.CollectAlignmentRefArgCollection, CollectRrbsMetrics.CollectRrbsMetricsReferenceArgumentCollection, CreateSequenceDictionary.CreateSeqDictReferenceArgumentCollection, OptionalReferenceArgumentCollection, RequiredReferenceArgumentCollection, ScatterIntervalsByNs.ScatterIntervalsByNReferenceArgumentCollection

public interface ReferenceArgumentCollection
Base interface for a reference argument collection.
  • Method Summary

    Modifier and Type
    Method
    Description
     
  • Method Details

    • getReferenceFile

      File getReferenceFile()
      Returns:
      The reference provided by the user, if any, or the default, if any.