Class IlluminaBPMLocusEntry

java.lang.Object
picard.arrays.illumina.IlluminaBPMLocusEntry

public class IlluminaBPMLocusEntry extends Object
A simple class to represent a locus entry in an Illumina Bead Pool Manifest (BPM) file
  • Constructor Details

    • IlluminaBPMLocusEntry

      public IlluminaBPMLocusEntry()
  • Method Details

    • getVersion

      public int getVersion()
    • getIlmnId

      public String getIlmnId()
    • getName

      public String getName()
    • getIndex

      public int getIndex()
    • getIlmnStrand

      public IlluminaManifestRecord.IlluminaStrand getIlmnStrand()
    • getSnp

      public String getSnp()
    • getChrom

      public String getChrom()
    • getPloidy

      public String getPloidy()
    • getSpecies

      public String getSpecies()
    • getMapInfo

      public int getMapInfo()
    • getCustomerStrand

      public String getCustomerStrand()
    • getAddressA

      public int getAddressA()
    • getAlleleAProbeSeq

      public String getAlleleAProbeSeq()
    • getAddressB

      public int getAddressB()
    • getAlleleBProbeSeq

      public String getAlleleBProbeSeq()
    • getGenomeBuild

      public String getGenomeBuild()
    • getSource

      public String getSource()
    • getSourceVersion

      public String getSourceVersion()
    • getSourceStrand

      public IlluminaManifestRecord.IlluminaStrand getSourceStrand()
    • getSourceSeq

      public String getSourceSeq()
    • getTopGenomicSeq

      public String getTopGenomicSeq()
    • getExpClusters

      public int getExpClusters()
    • isIntensityOnly

      public boolean isIntensityOnly()
    • getAssayType

      public int getAssayType()
    • getFracA

      public float getFracA()
    • getFracC

      public float getFracC()
    • getFracT

      public float getFracT()
    • getFracG

      public float getFracG()
    • getRefStrand

      public htsjdk.tribble.annotation.Strand getRefStrand()
    • getNormalizationId

      public int getNormalizationId()