Enum Class DiploidGenotype

java.lang.Object
java.lang.Enum<DiploidGenotype>
picard.fingerprint.DiploidGenotype
All Implemented Interfaces:
Serializable, Comparable<DiploidGenotype>, Constable

public enum DiploidGenotype extends Enum<DiploidGenotype>
A genotype produced by one of the concrete implementations of AbstractAlleleCaller. DO NOT ADD TO OR REORDER THIS ENUM AS THAT WOULD BREAK THE GELI FILE FORMAT.
  • Enum Constant Details

  • Method Details

    • values

      public static DiploidGenotype[] values()
      Returns an array containing the constants of this enum class, in the order they are declared.
      Returns:
      an array containing the constants of this enum class, in the order they are declared
    • valueOf

      public static DiploidGenotype valueOf(String name)
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      name - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null
    • fromBases

      public static DiploidGenotype fromBases(byte[] bases)
      Converts a pair of bases into a DiploidGenotype regardless of base order or case
    • fromBases

      public static DiploidGenotype fromBases(byte base1, byte base2)
      Converts a pair of bases into a DiploidGenotype regardless of base order or case
    • isValidBase

      public static boolean isValidBase(byte base)
      Returns:
      true if this is a valid base, i.e. one of [ACGTacgt]
    • getAllele1

      public byte getAllele1()
    • getAllele2

      public byte getAllele2()
    • isHeterozygous

      public boolean isHeterozygous()
    • isHomomozygous

      public boolean isHomomozygous()