Tag
File Format
A file format.
Include Headers
seqan/file.h
Functions
appendSeqsAppends all sequences stored in files of directory to a StringSet.
assignCroppedSeqIdExtracts the sequence id up to the first whitespace of a sequence file fragment.
assignQualExtracts the quality values of a sequence file fragment.
assignQualIdExtracts the quality value id of a sequence file fragment.
assignSeqExtracts the sequence part of a sequence file fragment.
assignSeqIdExtracts the sequence id of a sequence file fragment.
guessFormatGuesses a file format from the contents of a sequence file.
guessFormatFromFilenameGuesses a file format from a sequence file name.
guessStreamFormatcheck whether the data provided by reader is (one of) the specified format(s).
printAlignmentPrints a window of the visible layout of reads into a outstream.
readLoads records from a file.
splitDivides the contents of a sequence file into sequence file fragments separated by a file format specific delimiter.
writeSaves records to a file.
Tags
Fastq
FASTQ file format for sequences.
FASTQ file format for sequences.
QSeq
QSeq format, used for most of the Illumina read files.
Raw
Raw file format for sequences.
The file contains data in a raw format.
Fasta
FASTA file format for sequences.
FASTA file format for sequences.
Genbank
Genbank format for sequences from the Genbank database.
CGViz
CGViz file format for sequences. Only output.
Embl
EMBL format for sequences.
Fasta alignment
FASTA alignment file format for sequences.
Ucsc
Ucsc Genome Browser annotation file (a.k.a. knownGene format).
UcscIsoforms
Ucsc Genome Browser isoforms file (a.k.a. knownIsoforms format).
Amos message file
Amos message file.
ScoreMatrixFile
Score matrix file.
Gff
Gff annotation file.
Gtf
Gtf annotation file.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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