Package org.snpeff.motif


package org.snpeff.motif
  • Classes
    Class
    Description
    Load PWM matrices from a Jaspar file
    Create a DNA logo for a PWM References: - See WebLogo http://weblogo.berkeley.edu/ - "WebLogo: A Sequence Logo Generator"
    Create a DNA motif count matrix Refrence http://en.wikipedia.org/wiki/Position-specific_scoring_matrix
    Create a DNA motif count matrix and also count the number of sequences in that contribute to this motif.