Uses of Class
org.snpeff.geneSets.GeneSets
Packages that use GeneSets
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Uses of GeneSets in org.snpeff.geneSets
Subclasses of GeneSets in org.snpeff.geneSetsModifier and TypeClassDescriptionclass
A collection of GeneSets Genes are ranked (usually by 'value')Methods in org.snpeff.geneSets that return GeneSetsModifier and TypeMethodDescriptionstatic GeneSets
Create gene sets form GoTermsGeneSet.getGeneSets()
Methods in org.snpeff.geneSets with parameters of type GeneSetsModifier and TypeMethodDescriptionprotected void
Copy all data from geneSetsvoid
GeneSet.setGeneSets
(GeneSets geneSets) Constructors in org.snpeff.geneSets with parameters of type GeneSetsModifierConstructorDescriptionCreate an empty gene set (that belongs to a collection of gene sets 'geneSets')Create a new GeneSet by joining all GeneSets in the listGeneSetsRanked
(GeneSets geneSets) -
Uses of GeneSets in org.snpeff.geneSets.algorithm
Constructors in org.snpeff.geneSets.algorithm with parameters of type GeneSetsModifierConstructorDescriptionEnrichmentAlgorithm
(GeneSets geneSets, int numberToSelect) EnrichmentAlgorithmGreedy
(GeneSets geneSets, int numberToSelect) EnrichmentAlgorithmGreedyVariableSize
(GeneSets geneSets, int numberToSelect) FisherPValueAlgorithm
(GeneSets geneSets, int numberToSelect) FisherPValueGreedyAlgorithm
(GeneSets geneSets, int numberToSelect) LeadingEdgeFractionAlgorithm
(GeneSets geneSets, int numberToSelect, boolean orderDescending) NoneAlgorithm
(GeneSets geneSets)