Package org.snpeff.spliceSites
Class TranscriptSet
java.lang.Object
org.snpeff.spliceSites.TranscriptSet
- All Implemented Interfaces:
Iterable<Transcript>
A set of transcripts
- Author:
- pablocingolani
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Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
filter()
Filter out "bad transcripts"getByChromo
(String chrName) iterator()
void
setDebug
(boolean debug) void
setVerbose
(boolean verbose) Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface java.lang.Iterable
forEach, spliterator
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Field Details
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MAX_TRANSCRIPTS_PER_GENE
public static final int MAX_TRANSCRIPTS_PER_GENE- See Also:
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Constructor Details
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TranscriptSet
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Method Details
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filter
public void filter()Filter out "bad transcripts" -
getByChromo
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iterator
- Specified by:
iterator
in interfaceIterable<Transcript>
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setDebug
public void setDebug(boolean debug) -
setVerbose
public void setVerbose(boolean verbose)
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