Uses of Interface
org.snpeff.stats.SamplingStats

Packages that use SamplingStats
Package
Description
 
  • Uses of SamplingStats in org.snpeff.stats

    Classes in org.snpeff.stats that implement SamplingStats
    Modifier and Type
    Class
    Description
    class 
    Count singletons and other allele counts per sample
    class 
    Calculate statistics on genotype
    class 
    Count Hom/Het per sample From Pierre: For multiple ALT, I suggest to count the number of REF allele 0/1 => ALT1 0/2 => ALT1 1/1 => ALT2 2/2 => ALT2 1/2 => ALT2
    class 
    Calculate Ts/Tv rations per sample (transitions vs transversions)
    class 
    Variants annotation statistics.
    class 
    Variants statistics: These are statisticas at Variant level.
    class 
    Count variant types (SNP, MNP, INS, DEL)
    class 
    VCF statistics: These are statisticas at VCF line (i.e.