Alignment |
Represents an alignment between a Fragment and Reference sub-sequence
provides a path to Read and mate Alignment
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AlignmentIterator |
Iterates across a list of Alignments
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Fragment |
Represents an NGS biological fragment
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FragmentIterator |
Iterates across a list of Fragments
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Pileup |
Represents a slice through a stack of Alignments at a given position on the Reference
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PileupEvent |
Represents a single cell of a sparse 2D matrix with Reference coordinates on one axis
and stacked Alignments on the other axis
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PileupEventIterator |
Iterates across a list of PileupEvents
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PileupIterator |
Iterates across a list of Pileups
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Read |
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ReadCollection |
Represents an NGS-capable object with a collection of
Reads, References
and Alignments.
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ReadGroup |
Represents an NGS-capable object with a group of Reads
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ReadGroupIterator |
Iterates across a list of ReadGroups
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ReadIterator |
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Reference |
Represents a reference sequence
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ReferenceIterator |
Iterates across a list of References
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ReferenceSequence |
Represents a reference sequence standalone object
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Statistics |
Statistical data container
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