gov.nih.*
-
gov.nih.nlm.ncbi.ngs.LibDependencies Modifier and Type Constant Field Value public static final java.lang.String
NCBI_VDB
"ncbi-ngs"
public static final java.lang.String
NGS_SDK
"ngs-sdk"
ngs.*
-
ngs.Alignment Modifier and Type Constant Field Value public static final int
all
3
public static final int
clipLeft
0
public static final int
clipRight
1
public static final int
maxMapQuality
8
public static final int
minMapQuality
4
public static final int
noWraparound
16
public static final int
passDuplicates
2
public static final int
passFailed
1
public static final int
primaryAlignment
1
public static final int
secondaryAlignment
2
public static final int
startWithinSlice
32
-
ngs.PileupEvent Modifier and Type Constant Field Value public static final int
alignment_minus_strand
32
public static final int
alignment_start
128
public static final int
alignment_stop
64
public static final int
deletion
2
public static final int
insertion
8
public static final int
insertion_before_deletion
10
public static final int
insertion_before_match
8
public static final int
insertion_before_mismatch
9
public static final int
intron_minus
2
public static final int
intron_plus
1
public static final int
intron_unknown
3
public static final int
match
0
public static final int
mismatch
1
public static final int
normal_indel
0
public static final int
read_gap
5
public static final int
read_overlap
4
public static final int
replacement
10
-
ngs.Read Modifier and Type Constant Field Value public static final int
aligned
3
public static final int
all
7
public static final int
fullyAligned
1
public static final int
partiallyAligned
2
public static final int
unaligned
4
-
ngs.Statistics Modifier and Type Constant Field Value public static final int
int64
2
public static final int
none
0
public static final int
real
4
public static final int
string
1
public static final int
uint64
3